View Redoxidase 4032

Entry information : Pt2CysPrx02 (POPTR_0006s22130 / Pt2CysPrxB / Potri.006G204900)

Entry ID	4032
Creation	2006-11-03 (Nicolas Rouhier)
Last sequence changes	2010-07-08 (Marie Brette (Scipio))
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-03-08 (Qiang Li)

Peroxidase information: Pt2CysPrx02 (POPTR_0006s22130 / Pt2CysPrxB / Potri.006G204900)

Name (synonym)

Pt2CysPrx02 (POPTR_0006s22130 / Pt2CysPrxB / Potri.006G204900)

Class

Typical 2-Cysteine peroxiredoxin [Orthogroup: 2CysPrx001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Salicaceae Populus

Organism

Populus trichocarpa (Western balsam poplar) [TaxId: 3694 ]

Cellular localisation

Chloroplastic

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	Pt2CysPrx02 start..stop	S start..stop
Pt2CysPrx01	482	3.36e-175	1..263	1..269
Ptrem2CysPrx01	446	1.03e-161	38..263	1..226
Vv2CysPrx01	434	2.38e-156	1..263	1..273
Nt2CysPrx02-1A	425	1.04e-152	1..263	1..267

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	22075543..22075740	196	N° 2	22075320..22075394	73	N° 3	22074883..22074964	80	N° 4	22074707..22074786	78
N° 5	22073743..22073868	124	N° 6	22073053..22073166	112	N° 7	22072772..22072888	115
complement(join(22072772..22072888,22073053..22073166,22073743..22073868,2207470 7..22074786,22074883..22074964,22075320..22075394,22075543..22075740))

Literature and cross-references Pt2CysPrx02 (POPTR_0006s22130 / Pt2CysPrxB / Potri.006G204900)

Literature	Gama et physiologia plantarum in press.
DNA ref.	Phytozome 12: Chr06 (22075740..22072772)
Omic ref.	ePlant: Potri.006G204900

Protein sequence: Pt2CysPrx02 (POPTR_0006s22130 / Pt2CysPrxB / Potri.006G204900)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	263
PWM (Da):	28677.81	Transmb domain:	o388-407i520-542o568-590i748-765o
PI (pH):	8.04

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MACSATSTSFISSIAAAKSMATPLSKTLTLPNSFSGTRKSIQSPVLRSISLTRGSHSAKSFVVKASSELPLVGNVAPDFEAEAVFDQEFIKVKLSEYIGKKYVVLFFYPLDFTFVCPTEI
TAFSDRYEEFKQINTEVLGVSVDSFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSYGVLIPDQGVALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCPAG
WKPGDKSMKPDPRQSKDYFAAL*

Retrieve as FASTA

Remarks

Complete sequence from genomic (6 introns) and 7 ESTs (DT495540, DT479533, DT484010, DT480697, DT478918, DT497101, DT490852). Found mixed in the Unigen Pth.15098 (Pt2CysPrxA).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCTGCTCGGCAACTTCTACCTCTTTCATCTCCTCTATCGCCGCCGCCAAATCCATGGCCACTCCTCTCTCTAAAACCCTAACTCTCCCCAACTCCTTCTCTGGTACACGGAAATCT
ATCCAATCTCCCGTCCTCCGTTCCATTTCCCTGACCCGCGGCTCTCATTCTGCAAAGTCCTTCGTTGTCAAAGCCTCTGTAAGTTCAAACATAAATAAATAATTCAGATTGGATCGATGA
TTTTTATGCCTTCAATTTGCGTTTCTATAGTAATTCTTTGTAAATGCTTCTCTTGTGTTTGATAATTAGTCTCTAACTAGGTTTGCTTTCGTTTTCATCTGTGTAGAGAGTGAACTTCCA
TTGGTTGGAAACGTAGCACCGGATTTCGAGGCTGAGGCTGTTTTCGATCAAGAGTTTATTAAGGTAGTTTGTGCTTACAATGCTGTTGAATATAAGGAGTTATTTTCATTCCTTTTTTAA
CCGACTTTTTTAATTAAATTTCTTAATGTACATTGAAGTATTGTTTGGTGAAATTTGGACTTGAAAAAACAGTTAATTGCTGCTTTGATCGTTGTAAAATCTTAACTGGTTAATTGTTAA
CTTGATTAACGATGATAATGTGTCAATCAAGCTAGTTGAGATATGTTTTATTCAGGTTTCTTTGTGAAAATTGTATTCTTTTAATGAATGTGAATTGATTTTGTTACCACCTTGCAATTG
CGGTCATGTTTTGTTGTTTATTTTAAACTCTAGTTTGATTTGGTAATTTTGGTTTCAGGTGTTAAACTATCTGAATATATCGGGAAGAAATACGTGGTTCTATTTTTCTATCCATTGGAC
TTCACATTTGTTTGTCCCACAGGTTTGTTTTGAACTCAGCAAATGTAATTTGAAGTTTCAATGAGTTGTGGATGCTAATTGTTCTTCAAATTTTTTTTTTTGACCCACTTGTGTGCAGAA

AAATCACTGCTTTTAGTGACCGTTATGAGGAATTCAAGCAGATAAACACAGAAGTATTGGGTGTTTCAGTTGACAGTGTGGTATGTTCTTTTGTTTTTTGAAAATCAAGAAACAAAATCC
TAGGAGTTGTATGACTCCGGCCTGAAACTTTGGTGGTTTTTAAGTCTTCACTTGAAGTTTTCAACTTTATTTGATGATCTGGCTCTCACACAACACACGCATTTAGATAATGTCTCTAGA
TAATCTCATTGGAAACTTTTGTTTCTGTGAGGTGGGGGGAAGGATTCTTGTAGCCAACCTAAGCTTGCTTGGATTAAAGCTTGGTTGCGGTGATTTTGCATGTATGTATATATGTATTAG
TTTCCTTAACAGAAATAATGCGGGCCTTGCTTGCTAGAACAACTGAGAAAATTGCATGGCCTTTGCGTGTATTTTGAAACTGTATGACTCAAATCACAGCATTCTGTGTTGCTCAGCTGA
AGTGAATATTGTGATGGACAAAACTTGGACTTGGTTGAAGAAGAAAATAGGAACTGATAATTAGTGTAAAGAATCTCAATTTTGGTTCCTGTCATAAATCTATTGAATTTGGCTGTAGAA
GTTATAATCTTCATATAATGCAATTGCAACCTTTTTGGTAGCAAGTTAGGTCATTACTGCTCAGTGGCTACTATTCCATAAGCTTTTGTCTGTTCTAGTAATACATAAACATTTGCGTTA
ATAACTGGAATTGTTTATTGATATTGATTACAGCTGATTTTCTGGACAAAATTAGCTTCTAAGTTTGTTTATTGATATTGATCACAGCGAATGGAAGTATCCACTATCCATTTGCTGTAT
CACAGCTGATTTTGGTCTTGGACTAAAAATCAGAAATTGTTTATTGATATTGATTATGTCATGATACTCTTTGTGCAGTTTTCTCGCACCTTGCCTGGGTCCAAACAGATAGAAAGTCTG
GTGGGCTTGGAGATTTGAAGTATCCTTTGATTTCTGATGTCACCAAATCCATTTCAAAATCTTATGGAGTGTTAATCCCTGATCAGGTATGAGGAGCTCTTTTTTTTTTTTTTATTGTCA
TTCTAAAAGAACACAATAATCCCCTTCGATTCTTTTAATGTGTGTACATGCACACATCCATGCATTAGTTGTCTTCTATTTATTACTGGCATGAATCAGTATGAAGCTAAACTATTGTGA
CTTAGGTCTAATGCACATTTAGTTCTCTATTGAACGGGAATCAGACTGTCTTGTTCATTCTCTTAGTGGTCCTATGGATCCTGAAGTTAATGCAGTGCGTAACTACATGCATGTACATGC
ACACATCCATGCATTAGTTGTCTTCTGTTTATTACTGGCACGATTCAGTACGAAGCTAAACTATTGTGACATAGGTCTCATGCACATTTAGTTCTCTAATGAATATTGAATGGGAATCAG
ACTGTCTTGTTCATTCTCGTAGTGGTCCTATGGATCCTGAAGTCAATGCCCATTGTCTGATAATGTTGGGAAAAGGGTTCTCATATTAAACACCATGGCCACTCAGCCTCTGCACGCCGC
TTGGAGGAGGAGCCCTGGCCTCTGCATTCCTTTTATTTATTTAGTTATGGTTTTAATTTCAGGGGGAGTTGCTCTGAGAGGACTTTTTATCATTGATAAAGAAGGAGTCATCCAACACTC
CACCATTAACAACCTTGCCATTGGGCGTAGTGTTGACGAGACAAAGAGAACACTCCAGGTGATTTCACAAATACAGGGCAACAATATTCTAAAATCAGAAGATTTTGTAAATTAAGACTT
GGTTTTATTGTAGATCTAAAGTGCCTTTGGGCATGCATATGTTCTCCTTCCATTCTGATTGATTTCTGTTTAATCGTTTTTTGCTTTTGCATTTTCGTGCAGGCGCCTTGCAGTATGTGC
AAGAAAATCCAGATGAAGTTTGCCCAGCTGGGTGGAAGCCTGGTGACAAGTCCATGAAACCTGACCCAAGACAGAGCAAGGATTACTTTGCCGCATTGTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA