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Entry information : CintPGHS02
Entry ID 4228
Creation 2007-01-12 (Christophe Dunand)
Last sequence changes 2007-01-12 (Christophe Dunand)
Sequence status complete
Reviewer Filippo Passardi
Last annotation changes 2007-01-12 (Filippo Passardi)
Peroxidase information: CintPGHS02
Name CintPGHS02
Class H synthase    [Orthogroup: PGHS001]
Taxonomy Eukaryota Metazoa Chordata Ascidiacea Cionidae Ciona
Organism Ciona intestinalis    [TaxId: 7719 ]
Cellular localisation N/D
Tissue type Whole animal
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CintPGHS02
start..stop		 S start..stop
CintPGHS01 580 0 20..491 17..490
PretPGHS03 577 0 32..569 29..568
FhePGHS01 575 0 32..569 24..563
TrubPGHS01 573 0 32..569 22..561
Literature and cross-references CintPGHS02
Literature Satou,Y., Shin-i,T., Kohara,Y. and Satoh,N. Expressed genes in Ciona intestinalis (2002c)
DNA sequence http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=26554697&dopt=GenBank
Cluster/Prediction ref. UniGene:   Cin.13300
Protein sequence: CintPGHS02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   592
PWM (Da):   %s   68406.34 Transmb domain:   %s   i5-24o
PI (pH):   %s   8.21
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MYVIVAQLRA FKFYLQMENS FEHSPNTQPH YDPCCAFPCK HSAICTTLKD DYECDCTGTG FYGRNCEYGY FSTYVTDLFR PSRSTLHHYM TNYSLLWKLV NNISWLQKKL MAVVLKSKSN  YVYEPSPYVG MDSYPTWDSY INKTVYARTL PPIPQDCPTP MGTQGPKTLP DIKVLRSLLF QRNKFEPCPM RTNVFFAFFA QHFTHQFFKT NTIKGMPFQW GEHSVDLSHV YGHTIQRQHE  LRSHIDGKLK VFETNGEVFP PLTESANVTM SGEKLMRGRK FAIGHPGFGA FPSFFVIATL WLREHNRVCD ILKDLHPDWD DERLFQTARL ILTGETLKII VEDYVQHVSG FHFQLSYDPE  ILHKSTFSYN NQIHAEFHIL YHWHMLMPDF IELGEHVYPL KELLFNVDPV VEIGMETVLK QLGNQFAGKV VGGRNQGPEL VAVVELALKQ TRQMRMCSFN KYRERFGMKP YTSFEELTGE 
TEVAALLRNL YYDIDALELF VGYFVEHRRN RQVLGATMLE MGAPYSLKGV FGNPIGSPAW WKPSTFGGEV GFNIIKTTNL KVGLMTSNVM TFLTLRKLTW HNNILKNRLF LY 

Retrieve as FASTA  
Remarks Complete sequence from genomic, and 8 ESTs (BW032728 and BW225424: 5'ends not included in the Unigene). Manual annotation (11 introns) performed by the PeroxiBase Team and confirmed with partial ESTs. The PS is still suspicious.