1. Browse the Database
  2. View Redoxidase
Entry information : CbrPxd06
Entry ID 4284
Creation 2006-12-29 (Christophe Dunand)
Last sequence changes 2006-12-29 (Christophe Dunand)
Sequence status complete
Reviewer reviewer name not stored
Last annotation changes 2010-05-06 (Christophe Dunand)
Peroxidase information: CbrPxd06
Name CbrPxd06
Class Peroxidasin    [Orthogroup: Pxd002]
Taxonomy Eukaryota Metazoa Chromadorea Rhabditidae Caenorhabditis
Organism Caenorhabditis briggsae    [TaxId: 6238 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbrPxd06
start..stop		 S start..stop
CelPxd06 1545 0 1..864 1..859
CelPxd05 656 0 229..862 101..722
CelPxd05 100 1.21e-21 32..79 30..77
CbrPxd05 655 0 219..862 82..726
CbrPxd05 98 3.96e-21 32..79 32..79
CelPxd04 526 2.37e-176 285..863 161..725
CelPxd04 55 0.000000095 27..78 52..95
CelPxd04 54 0.000000241 20..83 83..140
Literature and cross-references CbrPxd06
Literature Stein LD et al., The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1:166-192(2003).
Protein ref. UniProtKB_Uniparc:   Q61C19 [Incorrect prediction]
DNA ref. GenBank:   CAAC02000514.1 (192627..197367)
Protein sequence: CbrPxd06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   864 (837)
PWM (Da):   %s   97318.06 (94273.5)  
PI (pH):   %s   9.9 (10.01) Peptide Signal:   %s   cut: 28 range:28-864
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MWWTKPLLAT TVCSLLLLLW MPSGCEADDD NPVTSRFHCL KNGCCDHHEW CRFWASVGEC KTNADWMVDK CQLACNTCTR KNVIRPTPRP SNRPRRPPPR KLAAPPTAPV VTTTPARRAP  PQSRPPPVTR RPTFTATAIP RRLPVTRRPF MNRRPPPPRQ RPNIIRPTIR PTPRVFTVTT PIPTFAFVPD IAPVTRFFVQ RPAVTRRPPV FFTTRRTFPP PPPPTTTTTT TTTQAPATTH  FTREFTQPPT TRSFINTASN ARCREIINDP IVAAEDMWRE RLSVSTEDNS RRQTVDLDQV IRSNTANACT PRLDEADCEA NMCYNALYRT LDGTCNNMKG EPLRGASYRP YTRLLPTIYD  NEVSEPVGSL FTDARPSPRE ITRKLTSSQA SVESPDYNAL IMQFGQFISH DMAKTTLVPS SKCNVCQNIT SRCMAVPITF DDANANFRQA QCIRVSRSSP ICGSGNLKPR QQLNENTGYI  DASPIYGSSV HDSKKFRDGT SGFLKLPMFN GNAFLPFDQN KCRNRAQCSV IFTAGDSRVN LFVGLSAWHT IFTKEHNRLV TTFKRLNPHW DGERLYQEAR KVVGAQVQAI VYREWLPKVL  GASFATVVGD YRGYDSDVDS TVANEFTSAA FRFGHGMIQE FYQRLDTSFR NISFGALAFQ KGTLHSDVLV NEGGVDPLIR GMFSQNVKRP QRVTTTVTEN MFGSTDLSTI NIQRGRDHGH  PAYVKYRELC GMGSAFNFEH LSREILNTGT RNKLQEIYGS VDKIDLWVGA LLEDPIIRGL VGPTVACIIG PQFKRTRDGD RFYYENPGIF SRRQLVEIRK SSLSRIICDN TNTISTIPRE 
AFRVGHMVPC SQIPSMDLNQ WRDF 

Retrieve as FASTA  
Remarks Complete sequence from genomic. The first AA is missing in the SwissProt/TREMBL prediction, added by the PeroxiBase Team. Strain="AF16".