View Redoxidase 5132

Entry information : VvPrxIIC-2

Entry ID	5132
Creation	2007-04-06 (Christophe Dunand)
Last sequence changes	2007-04-06 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-07-11 (Qiang Li)

Peroxidase information: VvPrxIIC-2

Name

VvPrxIIC-2

Class

Atypical 2-Cysteine peroxiredoxin (type II) [Orthogroup: PrxII001]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Vitaceae Vitis

Organism

Vitis vinifera (Grape) [TaxId: 29760 ]

Cellular localisation

N/D

Tissue type

Antheridias

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	VvPrxIIC-2 start..stop	S start..stop
VvPrxII03	267	6.61e-94	1..143	1..143
CsPrxII02	247	7.91e-86	1..143	1..143
PtPrxII03	244	8.54e-85	1..143	1..143
PbPrxII03	244	8.54e-85	1..143	1..143

Literature and cross-references VvPrxIIC-2

Literature	Velasco,R., Zharkikh,A., Troggio,M., Bhatnagar,S., Pindo,M., Cartwright,D., Coppola,G., Eldredge,G., Vezzulli,S., Malacarne,G., Mitchell,J., Stefanini,M., Segala,C., Gutin,N., Grando,M.S., Pruss,D., Dematte',L., Cestaro,A., Toppo,S., Fontana,P., Skolnick,M., Gutin,A., Salamini,F. and Viola,R. The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome.
DNA ref.	GenBank: AM459339 (17525..17953)

Literature

Velasco,R., Zharkikh,A., Troggio,M., Bhatnagar,S., Pindo,M., Cartwright,D., Coppola,G., Eldredge,G., Vezzulli,S., Malacarne,G., Mitchell,J., Stefanini,M., Segala,C., Gutin,N., Grando,M.S., Pruss,D., Dematte',L., Cestaro,A., Toppo,S., Fontana,P., Skolnick,M., Gutin,A., Salamini,F. and Viola,R. The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome.

DNA ref.

GenBank: AM459339 (17525..17953)

Protein sequence: VvPrxIIC-2

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	145
PWM (Da):	15808.16
PI (pH):	4.77

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAPIAVGDVI PDDTLAYFDE QDQLQQASVH SLDADRKVIV FGVPGAFTPT CSVKHVPGFI EKEGEMK*KD IDEILLVSVN APFVMKAWAK TYPDNKDVKF LADGSATYTH ALGLELDLSE
KGLGTRPRRF ALLVDDLKVK VTNNQI

Retrieve as FASTA

Remarks

Complete sequence from genomic (intron less). Stop codon in the sequence maybe due to bad sequencing and no EST. Possible pseudogene. Cultivar="Pinot Noir".