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Entry information : MtAPx07-B ( Medtr3g088160.1[4.0] / MtAPx07-b)
Entry ID 5136
Creation 2007-04-06 (Christophe Dunand)
Last sequence changes 2016-04-07 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-04-07 (Christophe Dunand)
Peroxidase information: MtAPx07-B ( Medtr3g088160.1[4.0] / MtAPx07-b)
Name (synonym) MtAPx07-B ( Medtr3g088160.1[4.0] / MtAPx07-b)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation Thylakoid-bound
Tissue type Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtAPx07-B
start..stop		 S start..stop
MtAPx07-A 796 0 1..387 1..387
GmAPx07 734 0 1..437 1..433
CcampAPx06 700 0 1..436 1..436
CcampAPx05 697 0 1..436 1..436
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 39980002..39980232 229 N° 2 39980317..39980448 130 N° 3 39982042..39982162 119 N° 4 39982236..39982336 99
N° 5 39982425..39982512 86 N° 6 39982929..39982996 66 N° 7 39983087..39983173 85 N° 8 39985113..39985187 73
N° 9 39985327..39985404 76 N° 10 39985497..39985601 103 N° 11 39985805..39985876 70 N° 12 39986182..39986334 151
join(39980002..39980232,39980317..39980448,39982042..39982162,39982236..39982336 ,39982425..39982512,39982929..39982996,39983087..39983173,39985113..39985187,399 85327..39985404,39985497..39985601,39985805..39985876,39986182..39986334)


exon

Literature and cross-references MtAPx07-B ( Medtr3g088160.1[4.0] / MtAPx07-b)
Literature Maunoury,N., Redondo-Nieto,M., Vaubert,D., Horvath,G., Mergaert,P. and Kondorosi,E. Expressed sequence tags from Medicago truncatula R108 young nodule library
Protein ref. UniProtKB:   G7J4Y2
DNA ref. Phytozome 12:   chr3 (39980002..39986334)
Cluster/Prediction ref. Phytozome Gene 12:   31057725 UniGene:   Mtr.6518
Protein sequence: MtAPx07-B ( Medtr3g088160.1[4.0] / MtAPx07-b)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   436 (292)
PWM (Da):   %s   47438.4 (30997.4) Transmb domain:   %s   o416-435i
PI (pH):   %s   9.38 (7.70) Peptide Signal:   %s   cut: 28 range:28-319
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MADRVLLTPSLSSSPTTMATITGGAAARMIPSATRATVSLSTSRSFFSFSLASSSRSVSSLNCLRSSPRISHIFLNQRRGEVRVSSGRFGTVAFASDPDQLKSAREDIKELLKTKFCHPL
LIRLGWHDAGTYNKNIEEWPQRGGANGSLRFEVELKHGANAGLVNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVTGPEQCPEEGRLPDAGPPSPADHLRQVFY
RMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKEKKDEDLLVLPTDAALFDDPSFKVYAEKYAVDQEAFFKDYAEAHAKLSNLGAKFEP
AEGVVVDGSPNVVGEKFVAAKYSSGKKELSDAMRKKIRAEYEAVGGSPDKALKSNYFLNIIIVIAALAILTYLFGN*

Retrieve as FASTA  
Remarks Complete sequence from at least 4 ESTs. Splicing variant of MtAPx07-a. The absence of sequence between SGK and ELSD is confirmed with the ESTs DY617089, BG455730 and BG457350. 3 ESTs out of 4 (all ESTs from TIGR TC accession) are also included in UniGene Mtr.6518. However it is impossible to distinguish which one belongs to each splicing variant.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAGACCGTGTGTTACTCACTCCTTCACTCTCTTCTTCACCAACCACAATGGCTACTATCACCGGCGGCGCCGCCGCACGCATGATTCCCTCCGCCACTAGAGCCACCGTCTCACTT
TCAACTTCCCGTTCGTTCTTCTCATTTTCATTGGCATCTTCTTCCCGTTCCGTTTCCTCGCTCAATTGCTTGCGTTCTTCTCCTCGCATTTCTCACATCTTTCTCAATCAGAGGTTTCGT
TTCGCTATTTCTCGTTGATGATTTTTTTTAGCATTTTTTTTAGTTCGTTTGTATTAATTCCGTTTGCGATTTTTCAGCGAAGAGGAGAAGTTCGCGTTTCGAGTGGACGATTCGGAACGG
TTGCCTTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGATATCAAGGAGCTTCTTAAGACTAAGTTCTGTCATCCTCTTTTGTGGTAATTTTCAGTGCTTTTTTTCTTGGATT
TTGTTTAATTTTTTATGATTTTTCTGTGCATTGCATTTGATTTAGCGTTTTCTTTGTCTGGAATTGAAGTTGTATAACGTAAGCTTCAATAATTGATTTTTCTGTAATTTTATGGTGACT
GAACAGCTTTATAACAGCTTATTTGCAGCTTATAGGACAAACACTTATCATGATAAGCACTTATGTATAAGTTTGCATTAGCTTTTTTTATAGCAGAACATACAATAACGTTAAATTGTT
TTTGAACATGCTATAAGTTGTTTTTATAAGCTATATTGGAGAACTTATGAAAATAAGTTGAAAAAAGCTTATGAAACCAGTCATAAGCTGTTTTCATAAGTTCTCTTAAACAGTCTCACA
AAACTTATGCTAGTAGATAAGCTCAAACAAGCCAATCCAAACAGACCCTAATCCTCTTGATATCCAAGGTGAAAATAAGTCAAGAGTATATTTGGTTTCATTTTTGGAGCTGCCAATTTA
TTTTAGAGACGTAGAATCAATTTAACAATGTTTGGGTGTTTTTTGGTAGGATTGATTTTGCCTGAATTAATTCTAACTGGAAGCTAGGGTCTTTAGTTTTTGTTTCTAAACATGATTTTT
ACTCTTAACTTATATTGTTCAACAACTCAGATTTACAAATATGTATCCAAACATAAACCACTTCCATTTAACTCACTTTTAACTAAAATCAATTCATTCTGAATCAATTTTTTGTCACGT
CATTGCAGAACCAAACACACATTAAGTAACTAAGTTCCTTGGTCAGTGACTCATATTATTAGGGGCTTGCATTCTCTATTATTTTATATTCTCGTTTTTTATTAACTTTCTTCTTCAAAT
TGATATGTGAAGTCATACATATATTTTTCAATGTTATGGTTCTTATTTCAAGATTAGGAGTTTTTTCTATAATTCTATTGTTGAATTTCCGGTTTTAGTGTTCCATTAACAGTGTCTTTG
CTGGTCGTTGTTTGATGATTGATACAAAAATGTTTACGATACACTATAAATTGTCGGGCGAATCTCTCCTACAAAGACTAGTGCAAAGCACTTGTGCAACATGTGTATGCAGTGTCCTGA
TTATACCTCTACTATATCTTTCTACTTAAAACTCACTTAAAAAGAGAAAACAAACTAAAGCATCAGCTAATTGGCCAACATGATATTGTGGCATAGAATAGAATCTCTGTAGCACTGACA
CCTCTGTTCGAAGGCGTGCCGGTGTCCGAAACCGACACATGTGCTTACATTAAATTAATTAATTTTTTTTCAAATTAACAAAGGTGTCGACTTGTCGGTGTCAGTGTCGATGCTTCAAAG
AATAGAGTACTCTTTGCATCACATTTACCGTAAGAGATTTATAGCTTTACAGTGCGAAATGATTCAAAGATGATGAATAAACTTTACTGCGACTAAAATGATTCAGTCAGCCTAGTTATC
AAACTCTGAGTTGATGAGATATACCAGCCACATATAGATGGAACTTTGTCATATGATTTGTAGCATAGGTGTGAACTCTATTTTCTTTTCATTGTGATGGTTCACACATACTTTTATGTT
ACAGATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGTGGCCACAGAGAGGTGGAGCCAATGGTAGCTTAAGATTTGAAGTTGAGTTGAAACATGGAGCCAA
TGCTGTGGTATGTATTCATTAACCACCAGTTGTATCTGAATATTGCTCGTGGTAATTATTCCTATGAGCTGCAATTTCAGGCCTTGTAAATGCATTGAAACTTCTCCAGCCAATCAAAGA
CAAATATTCAGGCGTGACATATGCAGACTTATTTCAGTTAGCTAGTGCTACAGCTGTGGAGAGGTTGTCTAAGTCCTACTTTGACTTCAAGATTGATTGTTGTCTATTTGAAATAATTAA
ATGATACTGACCGTTTTCTTTGAATCTTCAGGAAGCTGGAGGCCCAAAAATTCCCATGAAATATGGAAGAGTTGACGTCACTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGT
GGTAAAACCCATATATCTAATTGAAGTAATATTGTGATTTAAACTTTCTTCTTTGCCTCTAGGATTCTAGGACATGGATTGGATAAGCTACTGTTAATTTGGGAATATGAAACAGAGAGA
CAATAAGTTTTTTATTAGGCATCTATTAACTAACAGTTGGCCATATAGAAATGGCTGTGCTCGCATATTTAACTTCTATCGTTACATTCTGTTATATCACGCTTTTATAACTGATGATAT
GATGTCTTTGTTGGTTTTGGTTCGGTTTTGTATATGATTTTCCAATGTAAACAAACAATTTGGACAGGTTTAATTTGGTCGTTTAGATTTCTGGGTTGTTAACACTTAACAGCCCTAGTT
ACTAGTTTTTTCGGTTGCTAACTACTTTTATTTTTATTTTTTTATTTATGTATTTAGATGCTGGCCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGAATGGGGTTGAATG
ACAAGAGGTAATTCCCTGTGTTTATTATAAGGCTGGGGGTAAGTATTGGACTGTAGCTTTATGTCTGATCTTGACTATCACGTTATTGTATCCGCAGGAAATTGTTGCATTATCTGGTGC
GCACACACTGGGGCGGTCTAGACCAGACCGCAGTGGCTGGGGCAAACCTGAGACTAAATACACGCGGTATACTATCTGCCTTTTTACCCTCAAGCTATTAAACATGATTTTGAAAGAGTG
CTGAACTATTGCAAAACTACAGTCTAATTTTAATATTTGATGGTAAATAATCGTTTGAATGGATGGTTGTTTTATGTTAAATCTTTTTATACTGAATTGGATGATGACCACTGCTTTTTA
TAACTCATCTCCTTTATAACACCTTCAAGTCATTTGGTTGAGCCTAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGGTTTTGTAGGGTTGAGTTAGACTTGAGCCAAATTTC
AAGAGATATGAATACAATGAGTGTTTGTCGTTACTCCGTTTGTGTAGACATTCCGTGTCTTACATCAGTTTACTTTTAAGAAATGTAAACCTAAATCTTTGCTACGATTGTTTCTTTCTG
TCTTTAATAGTTCTTATGCCAACTATATATAATCTTAAGTATACAGACCTGTCAAGTTTTGTGCATCTCCAGAGCTAGTTTACATGATGATCAAATAGTTTTTGAATGGAATGATATCTG
AAATCAATAAAACAATATAAGATTCATGTGTATTTTGATAGAAATCAACTGATATAGAAGAATAAAATAGGGAAAATCCCTTTGATTACAGAATAATATTGCAGAACTTCGAGGGTCTGC
ACCTCCCTATTGCCTAAATGGCCCCTTCCCAGTCAAATCCTCAGATGCCCCTCAATCTTCCCATCCCTCCCCTATTTATTCTTAAAACTTAACCTCCCACTACTGACTTAATTAATTATT
AATCATAATATAATAATAAACCATAACTGCAAAATTAACTACTATAATTATAATAAAACTGACACAATTCTAATAAGATATCCAACAATACTCCCCCCCTAAAGATTCACCTTGTCCTCA
AGGTGAAGGATATCATAAGTGTCCACCTGGGTCCCATAACTTGAAGTATAATGACAGAGCACTGTGTGAATCATGCAAACTTATGCCTTGATCATATACCCTGTTTGTGGTGATATTTTT
TAGCAAAAAATACAGGATGATTGATGTCGTGGTGCCCACAGTAGTTCCCCTTATCTCTGACCCCATACTCATTTCTTTATTGCAAAGAAGTTTGCACAAATCTGTTTTGCTCTCCTGTCC
CATTTCCACAATCATGACATGCATATGGACATTTTCTACATCTCTCTCTATTTTCCCCATTTCTACATCTTCCCAACCTTTCTCTTCTCCTATCGCGGTGGGATTTGGATTGCCCTGGTC
AATATCTTGTGGTTGAATATTGAATGAACCTTGAGTCGTCAACCACTCCAATTCAGTTTCAGGTTCCTCTTCTTCATCAGACATAGGCATGATATCCCGATATTCCGGTTTAAAACGCCA
AATAAATGCAAGTAAGAACATATGCCAACTAACCTGTTGATGGCGTCGATTCCACCAGTGTGACCATTGGCGAGCACGACCTCTGAGTAACATCAACGCATCTGTCAGCTTCTCCTCATC
TGGTGTATCTCTCTTTTTGAAATGTTCCTCAATGCATAGCAGCCACCAGTATGCATCTTCTTTGCCATCAAACACTCGAAACTCCATTTCTTCCATAACGGTACAGCGGTTCCAAGATCG
ATGCTCTGATACCAGTTGATAGAAATCAACTGATATAGAAGAATAAAATAGGGAAAATCCCTTTGATTACAGAATAATATTGCAGAACTTCGAGGGTCTGCACCTCCCTATTGCCAAAAT
GGCCCCTTCCCAGTCAAATCCTCAGATGCCCCTCAATCTTCCCATCCCTCCCCTATTTATTCTTAAAACTTAACCTCCCACTACTGACTTAATTAATTATTAATCATAATATAATAATAA
ACCATAACTGCATAATTAACTACTATAATTATAATAAAACTGACACAATTCTAATAAGATATCCAACATATTTCTCATTCTACAGAAAGATGGGCCAGGAGCACCTGGGGGACAATCCTG
GACTGCACAATGGTTAAAGTTTGACAACTCTTACTTCAAGAGGTCAGATATTTTTAATTTATTTTTTGATTATTTTGTTGGGAGGGGAGGGGGTGATTGTATAACAGTATAGGAAGAAGG
GAAGAGGAGAGGGGAGTATGCATAGTCTACTTTTTCTTTTTGTAATTATTGTTACATACAGGACATCAAAGAAAAAAAGGATGAAGATCTATTGGTATTGCCAACTGATGCTGCTCTTTT
TGACGATCCTTCCTTCAAGAGGTAAAGTTGCTGAATTTTTTTCCCATGTCCATTTTAATTCAACATAAAATTAAACTGTGATATACCCATAAAATTATTTGTGAAATATGCAGGTATATG
CTGAGAAATATGCTGTAGATCAGGAAGCATTCTTTAAAGATTATGCTGAAGCACATGCCAAACTCAGCAACCTTGGAGCAAAGTTTGAACCTGCAGAGAGGTCTGTTCACGTTGAGCTAC
TGTTTTGTGCATTTTGAGATGGGTGTGCTTATTATGTGATTACTGACCTAGATATTATGTTCTTTCATACAAAATTTATTACCTTTTCTTTTTCATGTCTGCATACATATTTGATTTGAG
TTCAAATAACAAGACAGTTGACCAAATCACCTATTAAAGTTTTCTTTGTTATCTGTTTTTCAGGGCGTTGTGGTAGATGGTTCTCCAAATGTAGTGGGAGAGAAGTTTGTAGCAGCCAAG
TACTCCTCTGGAAAGAGGTTTTAAGCTTGCACGATTTATTAAATTTTACTATTCATTTTCTTGATGCTTGTCGGAAATTTATTATATATAATTTAATGAAAGGTTTGCATAGAATACATA
TTTTGCATATTGTTCATTGTTTCTATATTCCTGGTTTGATGCAGGAGTAAAAACAAGTGTGTTGTTTTCTTGTGCAAGTATCTTTAATAATACAAGAAGAAGCTATTTTCAAATCGTGGG
ATTATTATCACATGTAATTTTGGAAATCTTAAAATGAAGAAGAAAGGAATAAAATTCAATAGTGTGCCTATTTGAATTGCAGAAAGAGCTGTCTGATGCTATGAGGAAGAAGATACGGGC
TGAATATGAGGCTGTTGGCGGAAGCCCAGATAAGGCTCTAAAGTCAAACTATTTCCTAAACATCATAATTGTTATTGCTGCTTTGGCTATTTTGACCTATCTGTTTGGAAACTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAGACCGTGTGTTACTCACTCCTTCACTCTCTTCTTCACCAACCACAATGGCTACTATCACCGGCGGCGCCGCCGCACGCATGATTCCCTCCGCCACTAGAGCCACCGTCTCACTT
TCAACTTCCCGTTCGTTCTTCTCATTTTCATTGGCATCTTCTTCCCGTTCCGTTTCCTCGCTCAATTGCTTGCGTTCTTCTCCTCGCATTTCTCACATCTTTCTCAATCAGCGAAGAGGA
GAAGTTCGCGTTTCGAGTGGACGATTCGGAACGGTTGCCTTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGATATCAAGGAGCTTCTTAAGACTAAGTTCTGTCATCCTCTT
TTGATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGTGGCCACAGAGAGGTGGAGCCAATGGTAGCTTAAGATTTGAAGTTGAGTTGAAACATGGAGCCAAT
GCTGGCCTTGTAAATGCATTGAAACTTCTCCAGCCAATCAAAGACAAATATTCAGGCGTGACATATGCAGACTTATTTCAGTTAGCTAGTGCTACAGCTGTGGAGGAAGCTGGAGGCCCA
AAAATTCCCATGAAATATGGAAGAGTTGACGTCACTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGCCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTAC
CGAATGGGGTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCGCACACACTGGGGCGGTCTAGACCAGACCGCAGTGGCTGGGGCAAACCTGAGACTAAATACACGAAAGATGGGCCA
GGAGCACCTGGGGGACAATCCTGGACTGCACAATGGTTAAAGTTTGACAACTCTTACTTCAAGGACATCAAAGAAAAAAAGGATGAAGATCTATTGGTATTGCCAACTGATGCTGCTCTT
TTTGACGATCCTTCCTTCAAGGTATATGCTGAGAAATATGCTGTAGATCAGGAAGCATTCTTTAAAGATTATGCTGAAGCACATGCCAAACTCAGCAACCTTGGAGCAAAGTTTGAACCT
GCAGAGGGCGTTGTGGTAGATGGTTCTCCAAATGTAGTGGGAGAGAAGTTTGTAGCAGCCAAGTACTCCTCTGGAAAGAAAGAGCTGTCTGATGCTATGAGGAAGAAGATACGGGCTGAA
TATGAGGCTGTTGGCGGAAGCCCAGATAAGGCTCTAAAGTCAAACTATTTCCTAAACATCATAATTGTTATTGCTGCTTTGGCTATTTTGACCTATCTGTTTGGAAACTAA

Retrieve as FASTA