Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
492 |
PWM (Da): |
56579.25 |
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PI (pH): |
7.44 |
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Sequence
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MDPYRVRPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASAKGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPR GFAVKFYTRGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGIPQDYRHMEGAGVNTYMLINKAGKAHYVKFHWKPTCGIKCLSDEEAI RVGGANHSHATKDLYDSIAAGNYPQWNLFVQVMDPAHEDKFDFDPLDVTKIWPEDILPLQPVGRLVLNKNIDNFFNENEQIAFCPALVVPGIHYSDDKLLQTRIFSYADSQRHRLGPNYL QLPVNAPKCAHHNNHHDGFMNFMHRDEEVNYFPSRLDPVRHAEKYPTTPIVCSGNREKCFIGKENNFKQPGERYRSWDSDRQERFVKRFVEALSEPRVTHEIRSIWISYWSQADKSLGQK LATRLNVRPNF |
Retrieve as FASTA
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Remarks |
Complete sequence from genomic (6 introns), 5 cDNA and 59 ESTs. Two SwissProt/TREMBL accessions: Q96528 and Q0WUH6. Cultivar="Landsberg erecta" and "Columbia". |
Promoter►
Send to BLAST
Send to cis Analysis
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Terminator +►
Send to BLAST
Send to cis Analysis
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGATATCAT CTCTAAAGAC TAAGTGAAAT CCTATAAACT CAATATGCTC CTCTTACGGT TTGGTTTCTA AGTAATCTCG TTTATTGACA ATGAAACGCT TAAAGAAGGG TACTAGTTCC
TGTTTGTAAT CTTCTTTTCA AAATATTAAC GATTATTTTC TAAGGCAAAT AAATAAAAAG CTATGACTAA TATAGCTTAG TAAACAAGTA TCACTATCAT CCATTTGGTT CTACTTTAAA
AATGGATTTT TATTTGTATT TTAATCTTCT GCATCTATGA CGTGAGCTTA TAGTTGGAAT TTTATTGGGG TCTAATGTCA GACGCACGAT CTTGATAAAA AAGTTTTATG TCTGTCCATA
TTTTGATAAA TTGGCATAGT CATCACTCAT CACGTCAGAC CTTTTAATTG GTCAATCGTT ATGATGCTAC ATCGCATTCA TAATTTATAA TTTACATGTA AGTGGGGGTG GAGTATTTGA
TTATTCCGCT GCTAGTGGAA ATGCAAAAAG AATAATGAGA GCAGACCAAT TTTAATTATG CTTATACTTT GTTGCGCTTA ACTTTTAATC AGCTAATACA GTCTGATTAA TCTGATGTCT
CTCAGCCAGT AGTTTCTTTT CTTAAAGAGA ACCTCAGCGC AAATCAGAAA TTAGACACAT GGAGCCACAT CAAACTTAAT CACCAATAAT ATCCTTTTCT CATGTATTTT TCAGTCTCAT
ATTTTTTTTT ACAACTTGTT AAGTGGTAGT GTGCGAAGAT TTTAGATCGA AGTTACGCAT CTTAAGAGAT TATTTATCCA ATGAAATGGT ATAGTGAACT GTGTTTGCTA ATGGTCCAGG
ATTTTATACA TTTAAAATTC ATAACTTTGC AGTTTAACGA AAAACAATAA CAAATTTAAC GTGTTTTGGT TGTCGTTAAC AAGATCTCGG ATCCATTTAG GAAAAGTCAA TATCTTGATG
ACGAAATCAA GAAGACTTTA CTTTGATTGC ATGTGACGGA
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Retrieve as FASTA
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DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGATCCATACAGGGGGTACATCGATTGATTCTCTTTTTTTGTAATCTGTGATTTTACCTTACTTGATTTCGTATCGATTTGGTGTGATTTCGTGTTGAATCCAAAGTGTATGAATGAT CTCTCTCTCTCGGTTAAAATGATGCAAAATTGGGGTGATTGTTCGACTTGTTGAGGTTTTTTTGTGTGAATCGATTTCTTTATTATATAGTGGAGATTGGGTTTCGATTTGCATGCGTTG AAGATTCCACTGGAAAATTCAACATGTTTTTCCGTCTATTGATTGTTTATTTGTCAACATGCTCATGCTCATGCTCATGTTCTAATACACAAGTCTTAAGGCTGACGTGATCTGTCAATA TCGTTGTACATGTTTTAAGGTTTCTTTACGATTTTTTTAAAGTTATTTTAATCACTGTGTTCAATTGTGAATATCATTGTTGCTTGTATCGTATTTTTTTAATTGATCATATATACTTAT GTGGAATTGTTATGTATCAAGTATCAATGTATCATTATTTGTCATAGACGTTTCTCCAATCTATGGAAATTTGGTTAATTTTTTTGTGATCCAGTTCTTCTGAATTTATTTGTTGGTGTG CAGGTTCGTCCTTCAAGCGCTCATGATTCCCCTTTCTTCACTACAAACTCGGGTGCTCCTGTCTGGAACAACAACTCTTCTTTGACTGTCGGAACTCGAGAGGTCCGTTTCTCTTTCTTA TCTCTTGAATACAAATTATAACAAATATGTTGAACCAGTGGTTGTTAGAAATGCCCTTAAAGCTAGAGTAGTGGAAGCCAAATAATTTTATAAACGTTTGGATAATAATGTCATTAGTGT TTTTGTTGTGGACTTGCGTAAATCACATTTCTTCCTTCAGTTTTATGCCAAATCTGATATAATTCCTCAATGTTGATTCTGTCTCAGTTGCTTGGATTTTTAGATATGTTAAGCGATGGT TTTATATATTGTCAGGTCCAATCCTTCTGGAGGACTATCATCTGCTTGAGAAACTCGCTAACTTTGACAGGGAGCGGATTCCTGAGAGGGTTGTTCATGCCAGGGGAGCCAGTGCTAAGG GTTTCTTTGAAGTCACTCATGACATTACCCAACTTACTTCTGCTGATTTTCTTCGAGGACCTGGTGTTCAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCATGAGCGTGGCAGTC CCGAGACTCTCAGAGATCCCCGTGGTTTTGCTGTTAAGTTTTACACCAGAGAGAGGTTAGCTTTTTGTCTTATCCTTCCATTGTCTCTCTATTTTCTATAACCGATATCGATGTGTTTGC TGATATTCAAACGTTTATTTGCTTATCTATTTCGTTTCACCACCTATATGATTACTTGCAAATCATATCATACTATACTGATGATTCCTCTTACCCTCTGTTTGCAAACTCAGGGGAACT TTGATCTTGTTGGGAACAACTTCCCTGTATTCTTCGTCCGTGATGGAATGAAATTCCCTGACATGGTCCATGCATTGAAACCGAATCCCAAGTCTCACATTCAGGAGAACTGGAGGATAC TGGACTTCTTCTCCCACCACCCAGAGAGTTTGCACATGTTTTCATTTCTCTTTGATGATCTCGGTATCCCACAGGACTACAGGCACATGGAAGGCGCTGGGGTCAACACTTACATGCTAA TCAACAAAGCTGGAAAAGCTCACTATGTGAAATTCCACTGGAAGCCGACTTGTGGGATCAAATGCCTGTCGGATGAGGAAGCTATCAGAGTTGGAGGAGCCAATCACAGCCATGCCACCA AAGATCTCTATGACTCGATCGCAGCCGGGAACTATCCGCAGTGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCATGAAGACAAATTTGACTTCGATCCGCTTGATGTCACAAAGATCT GGCCTGAAGATATCTTGCCTTTACAACCTGTTGGTCGCTTGGTCTTGAACAAAAACATCGACAACTTCTTTAATGAGAACGAACAGATTGCATTCTGTCCTGCTCTTGTGGTTCCAGGCA TCCACTATTCAGATGATAAGCTACTCCAGACCCGGATCTTCTCCTACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTTAATGCCCCTAAATGTGCTCACC ACAACAATCACCATGATGGTTTTATGAACTTCATGCACAGGGATGAGGAGAGGTAATCTTATCTCTCGGCTCTAGAAACTCCCAGATACTTAAATTCGCAATCACATTTATATGAAGTGA ATTTGTTGCTTTCCAATTCCAGGTCAATTACTTCCCTTCAAGGTTGGATCCAGTTCGCCATGCCGAAAAATACCCTACAACTCCTATTGTCTGCTCTGGAAATCGTGAGAAGAGGTCAGA GTCCTCTACATACATTAATTTTTGATCACAAGTTTTATCCTCATAAGTCATAGTTAAAACTCAAATGTCATCTTTATATCACAGTGCTTCATCGGGAAGGAGAACAACTTCAAGCAACCA GGGGAGAGATACCGGTCCTGGGATTCAGACAGAGGTAAACACTAAAAACTCAAAAACCACATTGCAAAATCAACAATTACACATGAACCACAAATGTCATAATTCATTCTAATGGTCTTT TGTTTTGTACCAATAGGCAAGAACGATTCGTGAAGCGTTTTGTTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAATCCGCAGCATTTGGATCTCTTACTGGTCTCAGGCAGACAAAT CTCTGGGACAGAAACTAGCAACTCGTCTTAACGTGAGGCCAAACTTCTGA |
Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGATCCATACAGGGTTCGTCCTTCAAGCGCTCATGATTCCCCTTTCTTCACTACAAACTCGGGTGCTCCTGTCTGGAACAACAACTCTTCTTTGACTGTCGGAACTCGAGGTCCAATC CTTCTGGAGGACTATCATCTGCTTGAGAAACTCGCTAACTTTGACAGGGAGCGGATTCCTGAGAGGGTTGTTCATGCCAGGGGAGCCAGTGCTAAGGGTTTCTTTGAAGTCACTCATGAC ATTACCCAACTTACTTCTGCTGATTTTCTTCGAGGACCTGGTGTTCAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCATGAGCGTGGCAGTCCCGAGACTCTCAGAGATCCCCGT GGTTTTGCTGTTAAGTTTTACACCAGAGAGGGGAACTTTGATCTTGTTGGGAACAACTTCCCTGTATTCTTCGTCCGTGATGGAATGAAATTCCCTGACATGGTCCATGCATTGAAACCG AATCCCAAGTCTCACATTCAGGAGAACTGGAGGATACTGGACTTCTTCTCCCACCACCCAGAGAGTTTGCACATGTTTTCATTTCTCTTTGATGATCTCGGTATCCCACAGGACTACAGG CACATGGAAGGCGCTGGGGTCAACACTTACATGCTAATCAACAAAGCTGGAAAAGCTCACTATGTGAAATTCCACTGGAAGCCGACTTGTGGGATCAAATGCCTGTCGGATGAGGAAGCT ATCAGAGTTGGAGGAGCCAATCACAGCCATGCCACCAAAGATCTCTATGACTCGATCGCAGCCGGGAACTATCCGCAGTGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCATGAAGAC AAATTTGACTTCGATCCGCTTGATGTCACAAAGATCTGGCCTGAAGATATCTTGCCTTTACAACCTGTTGGTCGCTTGGTCTTGAACAAAAACATCGACAACTTCTTTAATGAGAACGAA CAGATTGCATTCTGTCCTGCTCTTGTGGTTCCAGGCATCCACTATTCAGATGATAAGCTACTCCAGACCCGGATCTTCTCCTACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTAT CTGCAACTACCTGTTAATGCCCCTAAATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCACAGGGATGAGGAGGTCAATTACTTCCCTTCAAGGTTGGATCCAGTT CGCCATGCCGAAAAATACCCTACAACTCCTATTGTCTGCTCTGGAAATCGTGAGAAGTGCTTCATCGGGAAGGAGAACAACTTCAAGCAACCAGGGGAGAGATACCGGTCCTGGGATTCA GACAGGCAAGAACGATTCGTGAAGCGTTTTGTTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAATCCGCAGCATTTGGATCTCTTACTGGTCTCAGGCAGACAAATCTCTGGGACAG AAACTAGCAACTCGTCTTAACGTGAGGCCAAACTTCTGA |
Retrieve as FASTA
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cDNA►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
AACAAAGACA AAACACATAC GTGTTTTGGT GTTGAGCTAA AATAAGATAT TTTGGCTCTC GCTATAAAAA AAAAATCGAC AACAGTGCAG ACACACGCCG ATTTGCGAGA TACACACAGT
CTCACCTAAA AATCGCAAAA GAAGAAAAAT TCGGATCAAA ATTGTCTTCA AGCATCATGG ATCCATACAG GGTTCGTCCT TCAAGCGCTC ATGATTCCCC TTTCTTCACT ACAAACTCGG
GTGCTCCTGT CTGGAACAAC AACTCTTCTT TGACTGTCGG AACTCGAGGT CCAATCCTTC TGGAGGACTA TCATCTGCTT GAGAAACTCG CTAACTTTGA CAGGGAGCGG ATTCCTGAGA
GGGTTGTTCA TGCCAGGGGA GCCAGTGCTA AGGGTTTCTT TGAAGTCACT CATGACATTA CCCAACTTAC TTCTGCTGAT TTTCTTCGAG GACCTGGTGT TCAGACTCCT GTTATCGTTC
GTTTCTCAAC TGTCATCCAT GAGCGTGGCA GTCCCGAGAC TCTCAGAGAT CCCCGTGGTT TTGCTGTTAA GTTTTACACC AGAGAGGGGA ACTTTGATCT TGTTGGGAAC AACTTCCCTG
TATTCTTCGT CCGTGATGGA ATGAAATTCC CTGACATGGT CCATGCATTG AAACCGAATC CCAAGTCTCA CATTCAGGAG AACTGGAGGA TACTGGACTT CTTCTCCCAC CACCCAGAGA
GTTTGCACAT GTTTTCATTT CTCTTTGATG ATCTCGGTAT CCCACAGGAC TACAGGCACA TGGAAGGCGC TGGGGTCAAC ACTTACATGC TAATCAACAA AGCTGGAAAA GCTCACTATG
TGAAATTCCA CTGGAAGCCG ACTTGTGGGA TCAAATGCCT GTCGGATGAG GAAGCTATCA GAGTTGGAGG AGCCAATCAC AGCCATGCCA CCAAAGATCT CTATGACTCG ATCGCAGCCG
GGAACTATCC GCAGTGGAAT CTCTTCGTTC AGGTGATGGA TCCTGCCCAT GAAGACAAAT TTGACTTCGA TCCGCTTGAT GTCACAAAGA TCTGGCCTGA AGATATCTTG CCTTTACAAC
CTGTTGGTCG CTTGGTCTTG AACAAAAACA TCGACAACTT CTTTAATGAG AACGAACAGA TTGCATTCTG TCCTGCTCTT GTGGTTCCAG GCATCCACTA TTCAGATGAT AAGCTACTCC
AGACCCGGAT CTTCTCCTAC GCTGATAGTC AGAGACACCG TCTTGGACCA AACTATCTGC AACTACCTGT TAATGCCCCT AAATGTGCTC ACCACAACAA TCACCATGAT GGTTTTATGA
ACTTCATGCA CAGGGATGAG GAGGTCAATT ACTTCCCTTC AAGGTTGGAT CCAGTTCGCC ATGCCGAAAA ATACCCTACA ACTCCTATTG TCTGCTCTGG AAATCGTGAG AAGTGCTTCA
TCGGGAAGGA GAACAACTTC AAGCAACCAG GGGAGAGATA CCGGTCCTGG GATTCAGACA GGCAAGAACG ATTCGTGAAG CGTTTTGTTG AAGCGCTTTC GGAGCCTCGT GTCACGCACG
AAATCCGCAG CATTTGGATC TCTTACTGGT CTCAGGCAGA CAAATCTCTG GGACAGAAAC TAGCAACTCG TCTTAACGTG AGGCCAAACT TCTGAATGAT ATCATCTCTA AAGACTAAGT
GAAATCCTAT AAACTCAATA TGCTCCTCTT ACGGTTTGGT TTCTAAGTAA TCTCGTTTAT TGACAATGAA ACGCTTAAAG AAGGGTACTA GTTCCTGTTT GTAATCTTCT TTTCAAAATA
TTAACGATTA TTTTCTAAGG CAAATAAATA AAAAGCTATG ACTAATATAG CTTAGTAAAC AAGTATCACT ATCATCCATT TGGTTCTACT TTAAAAATGG ATTTTTATTT GTATTTTAAT
CTTCTGCATC TATGACGTGA GCTTATAGTT GGAATTTTAT TGGGGTCTAA TGTCAGACGC ACGATCTTGA TAAAAAAGTT TTATGTCTGT CCATATTTTG ATA
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Retrieve as FASTA
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