1. Browse the Database
  2. View Redoxidase
Entry information : MtKat01 (Medtr3g115370.1[4.0])
Entry ID 5152
Creation 2008-10-09 (Christophe Dunand)
Last sequence changes 2008-10-09 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-05-20 (Catherine Mathe)
Peroxidase information: MtKat01 (Medtr3g115370.1[4.0])
Name (synonym) MtKat01 (Medtr3g115370.1[4.0])
Class Catalase    [Orthogroup: Kat001]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Cell culture
Leaves
Pods
Roots
Seedlings
Seeds
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtKat01
start..stop		 S start..stop
PsKat01 967 0 1..492 1..494
GmKat04 967 0 1..492 1..492
LjKat01 963 0 1..492 1..492
PauKat01 961 0 1..492 1..492
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5152' 'join(53951272..53951286,53951450..53951546,53952621..53952898,53953439..53954215,53954367..53954456,53954882..53954949,53955037..53955130,53955239..53955298)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 53951272..53951286 13 N° 2 53951450..53951546 95 N° 3 53952621..53952898 276 N° 4 53953439..53954215 775
N° 5 53954367..53954456 88 N° 6 53954882..53954949 66 N° 7 53955037..53955130 92 N° 8 53955239..53955298 58
join(53951272..53951286,53951450..53951546,53952621..53952898,53953439..53954215 ,53954367..53954456,53954882..53954949,53955037..53955130,53955239..53955298)


exon

Literature and cross-references MtKat01 (Medtr3g115370.1[4.0])
Literature He,X.-Z., Shadle,G., Scott,A.D., Harris,A.R., Gonzales,R.A., Bell ,C.J., Flores,H.R., Inman,J.T., Weller,J.W., May,G.D. and Dixon ,R.A. Expressed Sequence Tags from the Samuel Roberts Noble Foundation Medicago truncatula stem library
DNA ref. Phytozome 12:   chr3 (53951272..53955298)
EST ref. GenBank:   CB891887 [Different splicing]
Cluster/Prediction ref. Phytozome Gene 12:   31053684 UniGene:   Mtr.3811
Omic ref. Gene atlas:   Mtr.37587.1.S1_at Legoo:   Mtr.37587.1.S1_at
Protein sequence: MtKat01 (Medtr3g115370.1[4.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   492 (303)
PWM (Da):   %s   56550.08 (32424.1) Transmb domain:   %s   o4-26i
PI (pH):   %s   7.31 (7.31) Peptide Signal:   %s   cut: 27 range:27-329
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDPYKHRPSSAYNSPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTRGNFDLVGNNFPVFFVHDGMNFPD
MVHALKPNPKSHIQENWRILDFFSHFPESLHMFSFLFDDVGVPQDYRHMDGFGVNTYSLINKAGKAVYVKFHWKPTCGVKCLLEEEAIKVGGANHSHATQDLYDSIAAGNYPEWKLFVQT
IDPAHEDKFDFDPLDVTKTWPEDIIPLQPVGRLVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKMLQTRIFSYADSQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFIHRDEEVNYF
PSRHDPVRHAEKVPIPTANFSACREKCNIPKQNNFKQPGERYRSWAPDRQDRFLRRWVDALSDPRVTHEIRSIWISYWSADRSLGQKIASHLNMRPSI*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 7 introns). 27 ESTs. Four independent TC, one unigene. No other Kat found????
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCCATACAAGAGGTATACAACAATACTTCAATCTTTTTTCATTGCTTTCTGTCTCTGATTTTATGATTCATTCATTCAATTTTCTTTTTTGTTCATTCTATAGGTTTTTTAATTT
ATTTATCGAAGCAATTTTTATTGTCTCGTTCAAGTGTTAATTTTGTTAATTTCGTTACAGCACCGTCCGTCCAGCGCTTACAATTCTCCTTTCTGGACTACAAATTCTGGCGCACCTGTT
TGGAATAACAACTCATCCCTAACCGTTGGATCCAGAGAGGTATATCTAATTAATCAACAACTTATCCAACCATCTTTCATTTAATCCTTTTTTTTTATTTTTTATTTATCTTATTTGATG
AAATTGTTTAACTATATCTTTAAATTATTCTTTTAACATAATTTGATTTCTTGCCAGCAAAGTTTAATCACCGTTAAATTATATGATTTCACGGCTCTTTGATTTTCCAGTTTAATATTA
TGACATCCATGCATGTGATTAAGGCGCTTCAAGCACTTATCAAATACGCGCTTATACTATAAGGCCATGTTTGGATAAACAACTTATCAACTACTTATTATATAAGTTCTTGTGTGTAAG
TTATTTTTATAATAATAAAAGATGAAATTAAATTAAATCGCTTTCATATAAGTTATAAATTATTAACAACGATTTAGAGATCATTGAGTTGGTATATGATAGAATATTACGGTGCCGTTT
GATCCATATAGCCGACCCCACATAGTGGGATAAGGCTTGATTGGTTGTTTTTGTAGTTATAAGTTGTTTTCATAAACTATAATAACCGAGAGTTTATGAAAATAAGCTGAAAACAGCTCA
TGAACATGTTATCAGCTGTTTTCATAAGTTCTCTTAAACAGTTTCACATGTACGATAATCTCAACTAAGCCTATACAAACAGGCCCAACTGTTTTTTGATATAACTGAAGCTATAATGTG
AGAAAACTCGTTTTCTAAACTTTGTATAAGCTATTTTTATTTTATTATGAGCAGCTTATGGAAATAAGCTAAAAACCAGTTATGACACATCATAACTTTTTTGTACGCTCTTACAAAAAC
TTAGACTAGTGTTTATATCATAAAAAGTCAAAGTAAACCCTCCTGATTGCTCCATGTGTGCTAACAGTGCTGTATGGTCCAATTTTTATATAAAACCACACTACATTTAGTTGAGTGTCG
TGGACTTTGATTTTCGTAATTAGTTATCACCCTTGGTAATTACAACTTGGAGAATATTCTCCATCTGTCTGTTGTAAAGTTGAGGGTTAATTTGGACAAATAATAAAGTATCATGTAAGC
AGAAATTATATATTATTTTACCCCTTTTGGCAGGTCCAATTCTCTTGGAAGATTATCATCTTGTGGAAAAGCTTGCCCAATTTGATAGGGAACGGATCCCAGAACGTGTTGTCCATGCCA
GGGGAGCAAGTGCAAAGGGTTTCTTTGAAGTCACACATGATATTTCGCACCTGACTTGTGCAGATTTCCTACGAGCTCCTGGAGTTCAGACACCCGTCATTGTGCGTTTCTCCACTGTCA
TTCATGAACGTGGTAGCCCTGAAACCTTGAGAGACCCTCGAGGTTTTGCTGTGAAATTTTACACCAGAGAGAGGTAGAAATTAATGAATATATAGCATCATTTTATATCTCCATATCTTC
TAGTGACTAAATACAGTTACTGTAGCAGTTCGAATTTTGTTCACATGTTCTTTTTAAGCAACTCCAGTTTAGTTGGTAAAATGCTGATAATAGTTTCAACACGATCATACAAGCAAAAGA
TGCATAATGTGATTTAACCCCATATGTAGCATTTAATTAAACAATCTGGTCTAGTGATTTGATTATTCGATTACCTGAAAAAATTGAAGACATGCATTGTTGGTTTGAGTCCAGCATTGT
CTAAATCCTTTGTACTTTGAAATTTCAAGCTAGAGATAAAGATTATGTAGCATAATTAAAAATTATCTTCCAGTGACTAAATATAATTACAGTATTAGTTTAAAATTGCGTCATTTATGA
ATGTAGTTGCAGTTGTAACCAGGATGCTAGTGTATTTGCTTAAATGCTGACAATAATTGTTTTAGAAGAGGTGATATGGAACAGTTGGAGTCTTGTACCATAAATTATTCTTATCTTTAC
CTTCTGAACACAGGGTAACTTTGACCTTGTTGGAAACAACTTTCCTGTCTTCTTCGTTCACGACGGGATGAATTTTCCAGATATGGTCCATGCTCTTAAACCCAACCCCAAGTCCCACAT
TCAGGAGAATTGGAGAATCCTTGACTTCTTTTCTCACTTTCCAGAAAGCCTTCACATGTTCTCCTTCCTATTTGATGATGTGGGTGTCCCACAAGATTATAGGCACATGGATGGTTTTGG
AGTTAACACATATTCCCTGATCAACAAGGCTGGGAAAGCAGTGTACGTGAAATTTCACTGGAAGCCCACATGTGGTGTGAAGTGTCTGTTGGAGGAAGAGGCCATTAAGGTGGGAGGAGC
CAACCACAGCCATGCTACTCAAGACCTGTATGATTCAATTGCTGCTGGTAACTATCCTGAGTGGAAACTGTTTGTTCAAACAATAGATCCTGCTCACGAAGACAAATTTGATTTTGACCC
ACTTGATGTAACTAAGACTTGGCCTGAGGACATTATACCCCTTCAGCCCGTAGGTCGCCTGGTCTTGAACAAGAACATAGACAATTTCTTTGCTGAGAATGAACAACTTGCATTTTGTCC
TGCCATTATTGTGCCTGGTGTATATTACTCGGATGATAAGATGCTTCAAACCAGGATTTTCTCTTATGCTGATTCACAGAGGCACAGGCTTGGGCCAAACTATCTGCAACTTCCTGCTAA
TGCTCCCAAGTGTGCTCACCACAACAATCACCATGAGGGTTTCATGAATTTCATTCACAGGGATGAAGAGAGGTAATTTAATGTTTCATTTATCTATTAATATTCTGCTTTTTCATCTTT
AGTGCAAGAAGCCGATTGCCATGATAAACTAAATGTGATATTGCATCTTATTCTTTAGTTATATACAGTCTTTTCTCATGACTTGAGCTCTGCCATTTTATAGGTCAATTACTTCCCTTC
AAGGCATGATCCTGTTCGTCATGCAGAAAAGGTTCCCATTCCTACTGCTAATTTCTCTGCATGCCGTGAAAAGAGGTTAGTTTCCATAAATTGCTTAATATGAAAATATGATATGTGTTG
TGAACTTGTGAGTGAATCCATCAGCCGTGATTTTTACGATTGATTGCATTACCTTATTTAATTTATTTATTTATTTTTGTCTAAGAAACCACACATTTTAGAAACAACAAATCTATGATC
TTTCGTTGGATACAGTATGAAAATTGTTCTGACAAAGAAGCAGAGAAATAGGTCTACTACCTTGGTTAAATATTAAGTTGGTGCAAATTAATTTGAAGTTTAGGTAGCACTTATTTTTAG
CAGTACTTTTACATAAATTGATAATTATTGTTTTATAAAATAAATGACGAGTGAGGATCAATTAAATAGTGTCAGTGAAGCTGTTTAAACAATACCTGTATTGGGGAAGAATGTATGAAC
AATTTTACTTCTTAATGCAGTGCAATATTCCAAAGCAGAACAACTTCAAGCAGCCTGGAGAGCGATACCGATCTTGGGCACCCGACAGAGGTTCCTGTTACAAAATACTGATATGATCAA
CATGAATTGTGTTTGGCGATGTCTAATATTTGGTTTTCTTTGCCATAATCTTTTCAGGCAAGATAGATTTCTCCGCAGATGGGTGGATGCTTTATCCGATCCACGCGTCACCCATGAAAT
CCGCAGCATCTGGATCTCATACTGGTCTCAGAGGTGAGATTTAGACATGCTAATTTATCAAACTAGAAACTTCAGAGCAGTCAAGTGCAAATGCATCCCTACTTATTTGCTCATATGCTC
TTTGTTGGTTTTACTATGCAGGCTGATCGTTCTCTTGGACAAAAGATTGCATCTCATCTGAACATGAGGCCTAGCATTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCCATACAAGCACCGTCCGTCCAGCGCTTACAATTCTCCTTTCTGGACTACAAATTCTGGCGCACCTGTTTGGAATAACAACTCATCCCTAACCGTTGGATCCAGAGGTCCAATT
CTCTTGGAAGATTATCATCTTGTGGAAAAGCTTGCCCAATTTGATAGGGAACGGATCCCAGAACGTGTTGTCCATGCCAGGGGAGCAAGTGCAAAGGGTTTCTTTGAAGTCACACATGAT
ATTTCGCACCTGACTTGTGCAGATTTCCTACGAGCTCCTGGAGTTCAGACACCCGTCATTGTGCGTTTCTCCACTGTCATTCATGAACGTGGTAGCCCTGAAACCTTGAGAGACCCTCGA
GGTTTTGCTGTGAAATTTTACACCAGAGAGGGTAACTTTGACCTTGTTGGAAACAACTTTCCTGTCTTCTTCGTTCACGACGGGATGAATTTTCCAGATATGGTCCATGCTCTTAAACCC
AACCCCAAGTCCCACATTCAGGAGAATTGGAGAATCCTTGACTTCTTTTCTCACTTTCCAGAAAGCCTTCACATGTTCTCCTTCCTATTTGATGATGTGGGTGTCCCACAAGATTATAGG
CACATGGATGGTTTTGGAGTTAACACATATTCCCTGATCAACAAGGCTGGGAAAGCAGTGTACGTGAAATTTCACTGGAAGCCCACATGTGGTGTGAAGTGTCTGTTGGAGGAAGAGGCC
ATTAAGGTGGGAGGAGCCAACCACAGCCATGCTACTCAAGACCTGTATGATTCAATTGCTGCTGGTAACTATCCTGAGTGGAAACTGTTTGTTCAAACAATAGATCCTGCTCACGAAGAC
AAATTTGATTTTGACCCACTTGATGTAACTAAGACTTGGCCTGAGGACATTATACCCCTTCAGCCCGTAGGTCGCCTGGTCTTGAACAAGAACATAGACAATTTCTTTGCTGAGAATGAA
CAACTTGCATTTTGTCCTGCCATTATTGTGCCTGGTGTATATTACTCGGATGATAAGATGCTTCAAACCAGGATTTTCTCTTATGCTGATTCACAGAGGCACAGGCTTGGGCCAAACTAT
CTGCAACTTCCTGCTAATGCTCCCAAGTGTGCTCACCACAACAATCACCATGAGGGTTTCATGAATTTCATTCACAGGGATGAAGAGGTCAATTACTTCCCTTCAAGGCATGATCCTGTT
CGTCATGCAGAAAAGGTTCCCATTCCTACTGCTAATTTCTCTGCATGCCGTGAAAAGTGCAATATTCCAAAGCAGAACAACTTCAAGCAGCCTGGAGAGCGATACCGATCTTGGGCACCC
GACAGGCAAGATAGATTTCTCCGCAGATGGGTGGATGCTTTATCCGATCCACGCGTCACCCATGAAATCCGCAGCATCTGGATCTCATACTGGTCTCAGGCTGATCGTTCTCTTGGACAA
AAGATTGCATCTCATCTGAACATGAGGCCTAGCATTTAA

Retrieve as FASTA