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Entry information : PtKat01 (POPTR_0002s01080 / Potri.002G009800)
Entry ID 5155
Creation 2007-04-08 (Christophe Dunand)
Last sequence changes 2010-07-08 (Marie Brette (Scipio))
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtKat01 (POPTR_0002s01080 / Potri.002G009800)
Name (synonym) PtKat01 (POPTR_0002s01080 / Potri.002G009800)
Class Catalase    [Orthogroup: Kat001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue types Buds
Leaves
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtKat01
start..stop		 S start..stop
PdelKat01 1031 0 1..492 1..492
GhKat01 989 0 1..492 1..492
PpeKat01 987 0 1..492 1..492
PtKat02 981 0 1..492 1..492
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 574572..574586 13 N° 2 574245..574341 95 N° 3 573141..573418 276 N° 4 571884..572660 775
N° 5 571617..571706 88 N° 6 571305..571372 66 N° 7 571113..571206 92 N° 8 570956..571015 58
complement(join(570956..571015,571113..571206,571305..571372,571617..571706,5718 84..572660,573141..573418,574245..574341,574572..574586))


exon

Literature and cross-references PtKat01 (POPTR_0002s01080 / Potri.002G009800)
Literature Ralph,S., et al., Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).
DNA ref. Phytozome 12:   Chr02 (574586..570956)
Cluster/Prediction ref. UniGene:   Pth.3772
Omic ref. ePlant:   Potri.002G009800
Protein sequence: PtKat01 (POPTR_0002s01080 / Potri.002G009800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   492 (334)
PWM (Da):   %s   56490.11 (36221.5) Transmb domain:   %s   i52-74o
PI (pH):   %s   7.25 (8.38) Peptide Signal:   %s   cut: 20 range:20-353
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDPYKYRPSSAFGTPYWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISGLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTRGNFDLVGNNFPVFFIRDGMKFPD
MVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGVPQDYRHMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAVKVGGTNHSHATQDLYDSIAAGTYPEWKLFIQT
IDPDHEARFDFDPLDVTKTWPEDILPLQPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYF
PSRYDPVRHAESFPIPPAVCSGKREKCIIEKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRSIWISYWSADKSLGQKLASRLNVRPSI*

Retrieve as FASTA  
Remarks Complete sequence from genomic and 10 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCCCTACAAGGTACCGATTCTTCCTCATCCATCTTGTATTTTTGATTGAAAACATGTTTTTCTCCTCTTTTTTATGTATGAAATTATTCGACGAAGGAGCTTGTAGCTTAACTGT
CACCCATCCTTGGAATTAGAGCCTAATAAAAAGATTAGATTAGTGATGTTGTGGTGTTGTATTGTTTTTTTTTTTTTTTTGCCGTTTGATCATCATTTTGACTAATTCGATGGTGGTGGT
GGCAGTATACCGTCCATCAAGCGCTTTCGGTACTCCATACTGGACTACAAATTCTGGAGCTCCGGTTTGGAACAACAACTCGTCTTTGACCGTTGGATCTAGAGGTATTTTTTGTTTCTT
AAATCTATGGTTGCTGAGCTAGATAATTAATTGCTAGGTTAAGGTGTATGTATGCTTGTCTGGTTTGGATATTGTTCTGATATGTTAATGTTTTTTAAGACTGTTGCTGTGTTTATGTTG
ATAAAGATTGACTTTTCAGTGTAGTAATTTGTTGTCCATTTTGGAAGAATTATTATTTAATTTGAGTTATTATCAGTTTTTTTTTTGGTTTCTCGCTGTATCTTTGTGATTGGTTATTTG
ATGCTTCCTATGTTTCCGCTGAATTTTAAATGTCAAGGATGAATTAAGTAGCATATTTAGAGAGTTATGGTTAAGATTGATGCAAGAAAAAGGTAGGAGTTATTGTACTGTTGTCGAAAT
CATTATGCTGGTGGCAAGCTTATAGCAGAATGTGAAGTTTCCGATCAGATGCAAAATGATTTGAGGAGCAGGGCCTTTTTGGGTCTGGTTGATTTTTTTATTTGAGGTTGGATATTGTGA
TTCAAGTCGAGCTTATTTATATAATATAAAGTCAGCTTAATCGTGAGCCAGGGCAAACCTCGTGCTGAAAGGCAGAATGTATTAAATGAACCCAGATCAAGTACTGGCATGTTGTTTTTA
GTCAGAATCAGTGTTATGAATGTCTATGCATTGTAGAGTGAATTTTTAGAAGTGTTTTTTCCCTCCCTTTTTTGCTGTAAGTTTTATAATGATTGTAGTGGTATGACTTGGAGAGTAACT
TTGAGTTGTTGGGAATGTATTTTTGCTTGTCATGTAGAGTGAGGATTAAGACACTGAGGTTTGATCTGCATATACTTTTTTCTCTGACAGGTGTCCAATCCTCCTTGAGGATTACCATCT
GGTGGAGAAGCTTGCCAATTTTGACAGGGAGAGGATTCCAGAGCGTGTTGTCCATGCTAGGGGAGCCAGTGCAAAGGGTTTCTTTGAGGTTACCCATGATATCTCTGGCCTCACATGTGC
TGATTTTCTCCGGGCTCCTGGAGTTCAGACACCTGTCATTGTCCGCTTCTCCACAGTTATCCATGAGCGTGGCAGCCCTGAAACCCTGAGGGATCCACGTGGATTTGCAGTGAAGTTTTA
CACCAGAGAGGTGAGGTCTTATTTGATGTTTTATTTCTGTTAGTGTGATATGGTGGAGGAAAGCAAATGTGTGAGGCACCGATGATGATGTAGACAGATTCAGCAGATATATCACATCCA
TAGGGATCGATGAATTAAAGTTTAATATGATTATCCCACAAAGTTTTAGATGTTCATAAATGTATTGTTTGCAAAATCTTTATCTGCTTGTTTTGATGAAGGTTTGACTGGCATGAATAA
GACTTGAGAAAAGAGAGAACTTAATTCTTTTTCCTATTTGTGTGTCTCAATTCACCAGCATGAATGTTGTTGTTTTTCTATACTCAAACAACAAGGCATAACCTTTTACATCCGTGAAGC
TTTGTTTTTGTGCATTATTCCTTTACATAGGAATAATTAATTCTAGTTGATTGTATGAAGTTTATTGCTTTAGCTTTTCAAGGTTCCAATTTTCTTATTCTCTATGCCCTTCCTTGACTT
GTTAATTCAGGGGGTAACTTTGATCTCGTGGGAAACAATTTCCCTGTCTTCTTCATCCGTGATGGAATGAAATTCCCAGACATGGTGCATGCCCTTAAGCCCAACCCTAAGTCTCATATT
CAGGAGAACTGGAGGATTCTTGACTTCTTCTCCCACCATCCTGAAAGTTTGCACATGTTCTCCTTCCTATTTGATGATTTGGGTGTTCCACAAGATTATAGACATATGGAAGGCTCTGGT
GTTAACACCTACATGTTGATCAACAAGGCTGGAAAAGCCCATTATGTGAAATTTCATTGGAAACCTACTTGTGGTGTGAAATGTTTGTTGGAGGATGAGGCAGTTAAAGTAGGAGGCACA
AATCACAGTCATGCTACTCAGGATCTATATGACTCCATTGCAGCTGGCACCTATCCTGAGTGGAAACTTTTCATCCAGACAATTGATCCTGACCATGAAGCCAGGTTTGATTTTGACCCA
CTTGATGTAACCAAGACCTGGCCTGAGGATATCTTGCCCCTGCAGCCAGTTGGTCGCTTGGTCTTGAATAAGAACATCGACAACTTCTTTGCTGAAAATGAGCAGCTTGCTTTCTGCCCT
GCTATTGTGGTTCCTGGTGTTTACTATTCAGATGACAAGCTACTCCAGACTCGAATCTTCTCCTATGCTGATACCCAGAGGCACCGTCTTGGACCAAACTATCTGCAGCTCCCTGCTAAT
GCTCCCAAGTGTGCTCATCATAACAATCACCATGAAGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTACTCTCTCTCTCTATCTATCTCTACACACACTATTTTAATCGGAAGCTC
AGCTATTTTACCTTCTGTTTAATTGGATCATTTCTCTCTTCTTCGTCTATGTTGAGGTTATTTTTGTGTCCTTTTGCCTTTGCTTTTAATTTTTGTTCTGATCAATTATCATCGTGTATT
CTTCAGGTGTCAACTATTTCCCATCAAGGTATGATCCAGTTCGCCATGCTGAGAGTTTCCCCATTCCTCCTGCTGTCTGCAGTGGAAAGCGTGAGAAGGTAAGTTTTTTCCCTCTTCTTT
GTCTTATTTTTTTGAGCCCACTGCTAAAACGAAATTGTCTAGTGTTCTTGTGTGTGTGAGTTTGGGGTTCTTGTTACGTTTTTCAGAGCAATAATAGGACTAGTGGGATTGGAAAGCTAT
TGTATGATCCTATAGAGCTGTGGGTTAAATTGATGGGCTGTTAATATGATCGGAGATATATTTATTAGCACATAATTTATCAGCCTTTGCTGGTTATTGCAGTGTGCATCATTGAGAAGG
AGAACAACTTCAAGCAACCTGGAGAGAGATACCGATCCTGGGCACCAGACAGGTAAACCATAGTTCTGCGAGTACTTTACAATGATTAATTATATGACTGATCCTTCATGCTCTTTCCTT
ATCTTTTCTTCCCTCTATCTTTTTGTACAGGCGCAAGAACGATTTATTTGCCGATGGGTTGATGCCTTATCTGACCCACGCGTCACACATGAGATTCGCAGCATCTGGATCTCGTACTGG
TCTCAGGTAAGACTCCCTTTGGAATTATGCAGTGTCATGTTCATACTGGATCGCATATAAATGTTTTGATTCTAAATCCATTACTGGCAATGATGCGATGCAGGCGCTGATAAATCTTTG
GGTCAGAAGCTAGCATCTCGTCTCAACGTGAGACCAAGCATTTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCCCTACAAGTACCGTCCATCAAGCGCTTTCGGTACTCCATACTGGACTACAAATTCTGGAGCTCCGGTTTGGAACAACAACTCGTCTTTGACCGTTGGATCTAGAGGTCCAATC
CTCCTTGAGGATTACCATCTGGTGGAGAAGCTTGCCAATTTTGACAGGGAGAGGATTCCAGAGCGTGTTGTCCATGCTAGGGGAGCCAGTGCAAAGGGTTTCTTTGAGGTTACCCATGAT
ATCTCTGGCCTCACATGTGCTGATTTTCTCCGGGCTCCTGGAGTTCAGACACCTGTCATTGTCCGCTTCTCCACAGTTATCCATGAGCGTGGCAGCCCTGAAACCCTGAGGGATCCACGT
GGATTTGCAGTGAAGTTTTACACCAGAGAGGGTAACTTTGATCTCGTGGGAAACAATTTCCCTGTCTTCTTCATCCGTGATGGAATGAAATTCCCAGACATGGTGCATGCCCTTAAGCCC
AACCCTAAGTCTCATATTCAGGAGAACTGGAGGATTCTTGACTTCTTCTCCCACCATCCTGAAAGTTTGCACATGTTCTCCTTCCTATTTGATGATTTGGGTGTTCCACAAGATTATAGA
CATATGGAAGGCTCTGGTGTTAACACCTACATGTTGATCAACAAGGCTGGAAAAGCCCATTATGTGAAATTTCATTGGAAACCTACTTGTGGTGTGAAATGTTTGTTGGAGGATGAGGCA
GTTAAAGTAGGAGGCACAAATCACAGTCATGCTACTCAGGATCTATATGACTCCATTGCAGCTGGCACCTATCCTGAGTGGAAACTTTTCATCCAGACAATTGATCCTGACCATGAAGCC
AGGTTTGATTTTGACCCACTTGATGTAACCAAGACCTGGCCTGAGGATATCTTGCCCCTGCAGCCAGTTGGTCGCTTGGTCTTGAATAAGAACATCGACAACTTCTTTGCTGAAAATGAG
CAGCTTGCTTTCTGCCCTGCTATTGTGGTTCCTGGTGTTTACTATTCAGATGACAAGCTACTCCAGACTCGAATCTTCTCCTATGCTGATACCCAGAGGCACCGTCTTGGACCAAACTAT
CTGCAGCTCCCTGCTAATGCTCCCAAGTGTGCTCATCATAACAATCACCATGAAGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCAACTATTTCCCATCAAGGTATGATCCAGTT
CGCCATGCTGAGAGTTTCCCCATTCCTCCTGCTGTCTGCAGTGGAAAGCGTGAGAAGTGCATCATTGAGAAGGAGAACAACTTCAAGCAACCTGGAGAGAGATACCGATCCTGGGCACCA
GACAGGCAAGAACGATTTATTTGCCGATGGGTTGATGCCTTATCTGACCCACGCGTCACACATGAGATTCGCAGCATCTGGATCTCGTACTGGTCTCAGGCTGATAAATCTTTGGGTCAG
AAGCTAGCATCTCGTCTCAACGTGAGACCAAGCATTTGA

Retrieve as FASTA