View Redoxidase 5160

Entry information : MtPrxII05 ( MtPrxIIE / Medtr7g103610.1[4.0])

Entry ID	5160
Creation	2007-04-08 (Christophe Dunand)
Last sequence changes	2016-04-22 (Catherine Mathe)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2016-04-25 (Christophe Dunand)

Peroxidase information: MtPrxII05 ( MtPrxIIE / Medtr7g103610.1[4.0])

Name (synonym)

MtPrxII05 ( MtPrxIIE / Medtr7g103610.1[4.0])

Class

Atypical 2-Cysteine peroxiredoxin (type II) [Orthogroup: PrxII001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Medicago

Organism

Medicago truncatula (barrel medic) [TaxId: 3880 ]

Cellular localisation

N/D

Tissue types

Leaves
Roots
Stems

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	MtPrxII05 start..stop	S start..stop
VvPrxII05	306	2.22e-107	41..217	38..212
PtPrxII05	304	2.57e-106	1..217	1..218
PtrtrPrxII05	300	6.37e-105	1..217	1..218
PtremPrxII05	300	9.35e-105	1..217	1..218

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5160' 'complement(join(41929444..41930097))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	41929444..41930097	652
complement(join(41929444..41930097))

Literature and cross-references MtPrxII05 ( MtPrxIIE / Medtr7g103610.1[4.0])

Literature	Cheung,F., Moskal,W., Cooper,J.D., Xiao,Y., May,G.D. and Town,C.D. Construction and analysis of normalized cDNA library from flowers, seeds and stems of Medicago truncatula
DNA ref.	Phytozome 12: chr7 (38843447..38842477)
Cluster/Prediction ref.	Phytozome Gene 12: 31081554 UniGene: Mtr.14209
Omic ref.	Gene atlas: Mtr.12679.1.S1_at Legoo: Mtr.12679.1.S1_at

Protein sequence: MtPrxII05 ( MtPrxIIE / Medtr7g103610.1[4.0])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	217 (693)
PWM (Da):	23219.24 (77844.6)	Transmb domain:	i5-27o
PI (pH):	8.69 (8.13)	Peptide Signal:	cut: 22 range:22-714

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MATSLSFSRL LSSSTTTSLL SPKTKTLSSN FTLPLKFNRF NSKPLRFSSS PKISATISVG DKLPESTFSY LDPAGEVQTI TVSDLTKGKK AVLFAVPGAF TPTCSQKHVP GFVEKSAELK
AKGIDTIACI SVNDAFVMKA WKEDLKVNDE VVLLSDGNGD FTKAIGVELD LSDKPVGLGV RSRRYALLAE DGVVKLFNLE EGGAFTFSGA DDILKVL*

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron) and ESTs.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCAACAT CACTCTCTTT CTCCAGACTC CTCTCATCTT CTACCACTAC CTCACTCTTA TCTCCCAAAA CCAAAACCCT CTCTTCCAAC TTCACCCTCC CTCTCAAATT CAACCGCTTC AACTCAAAAC CTCTCCGATT CTCCTCTTCC CCCAAAATCT CCGCCACCAT CTCCGTCGGC GACAAACTCC CCGAATCCAC CTTCTCCTAC CTCGACCCCG CCGGCGAAGT CCAAACTATA ACCGTCTCCG ACCTAACAAA AGGCAAAAAA GCAGTCCTCT TCGCCGTTCC AGGAGCCTTC ACACCAACAT GCTCACAGAA ACACGTTCCT GGATTCGTGG AGAAATCAGC GGAGCTAAAA GCGAAGGGAA TTGACACCAT CGCTTGCATT TCGGTGAACG ATGCGTTCGT GATGAAAGCG TGGAAGGAGG ATTTGAAGGT TAATGATGAA GTGGTGCTTT TGTCTGATGG GAATGGTGAT TTCACGAAAG CAATTGGTGT TGAGCTTGAT TTGAGTGATA AACCTGTTGG ATTGGGTGTT AGGTCAAGAC GTTATGCTTT GTTGGCTGAA GATGGTGTTG TTAAGCTTTT CAATTTGGAG
GAAGGTGGTG CTTTTACTTT CAGTGGTGCT GATGATATTC TCAAAGTTCT TTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA