View Redoxidase 5163

Entry information : VvPrx39 (GSVIVT01031312001)

Entry ID	5163
Creation	2007-04-10 (Christophe Dunand)
Last sequence changes	2007-04-10 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2011-07-02 (Qiang Li)

Peroxidase information: VvPrx39 (GSVIVT01031312001)

Name (synonym)

VvPrx39 (GSVIVT01031312001)

Class

Class III peroxidase [Orthogroup: Prx018]

Taxonomy

Eukaryota Viridiplantae Streptophyta Vitaceae Vitis

Organism

Vitis vinifera (Grape) [TaxId: 29760 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	VvPrx39 start..stop	S start..stop
VvPrx27	627	0	1..322	11..332
VvPrx28	626	0	1..322	12..333
EcamPrx151	508	0	1..322	1..323
NtPrx65-1B	503	0	3..322	13..334

Literature and cross-references VvPrx39 (GSVIVT01031312001)

Literature	Velasco,R., Zharkikh,A., Troggio,M., Bhatnagar,S., Pindo,M., Cartwright,D., Coppola,G., Eldredge,G., Vezzulli,S., Malacarne,G., Mitchell,J., Stefanini,M., Segala,C., Gutin,N., Grando,M.S., Pruss,D., Dematte',L., Cestaro,A., Toppo,S., Fontana,P., Skolnick,M., Gutin,A., Salamini,F. and Viola,R. The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome
DNA ref.	GenBank: AM461949.2 (4057..5221) CAAP02000854.1 (64213..63082)

Literature

Velasco,R., Zharkikh,A., Troggio,M., Bhatnagar,S., Pindo,M., Cartwright,D., Coppola,G., Eldredge,G., Vezzulli,S., Malacarne,G., Mitchell,J., Stefanini,M., Segala,C., Gutin,N., Grando,M.S., Pruss,D., Dematte',L., Cestaro,A., Toppo,S., Fontana,P., Skolnick,M., Gutin,A., Salamini,F. and Viola,R. The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome

DNA ref.

GenBank: AM461949.2 (4057..5221) CAAP02000854.1 (64213..63082)

Protein sequence: VvPrx39 (GSVIVT01031312001)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	322 (304)
PWM (Da):	34982.44 (32959.5)
PI (pH):	8.32 (8.39)	Peptide Signal:	cut: 19 range:19-322

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MPTFFFCIML FLTASVSSAS LEVGFYKSSC PSAETIVRKA VNKAVSKNPG MAAGLIRMHF HDCFVRGCDG SVLLDSTPGN PSEKESPVND PSLRGFEVID EAKAEIEAQC PQTVSCADVL AFAARDSAYK VGGINYAVPS GRRDGRISLK DEPSLHLPPP FFNAKQLEEN FARKGLTLDE MVTLSGAHSI GVSHCSSFSN RLYSFNATHP QDPSIEPEFA RHLKTKCPPP SNTGSDPTVP
LEVQTPNRLD NKYYKDLKSR KGLLTSDQTL FDSPSTVRMV KNNARYGANW GNKFAAAMVR MGSIDVLTGT QGEIRKNCRV VN

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 15, intron 1). No EST. Cultivar="Pinot Noir" and "PN40024". Contig from PN40024 also contains 2 other peroxidases.