Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
337 (0) |
| PWM (Da): |
36343.58 (0.0) |
Transmb domain: |
i13-35o |
| PI (pH): |
8.34 (6.11) |
Peptide Signal: |
cut: 18 range:18-17 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MELNSIPYIA SWSSSSSCFY YSYSRCACRG TRDGKLVTKA SAAGRKRAAD SVCSQLSEQG TEDSISGPRS SWRIRRRDLA SAILLPFLIP RVNISIAAEI YDASIIRSGV RSVLTKGKAA
GVLRLVFHDA GTFEIGDGSG GMNGSIIYEV DRPENIGLNR SIKILRKAKE GIDNVQKVSW ADLIAVAGAE AVALCGGPEI PVRLGRVDSS ADPSGKLPEE TLDAASLKTL FSKKGFSAQE
LVVLSGAHTI GGKGFGSPVV FDNTYFKVLL DNRPPQTSST GNGMAAMVGL RTDWALTEDD ECLRWIRIYA EDQARFFDDF RDTYIKLVDS GASWRTA
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Retrieve as FASTA
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| Remarks |
Complete sequence from genomic (chromo 1, 10 introns) and 15 ESTs (Unigene). Cultivar="B73". Incorrect prediction from Phytozome, sequence shift + mismatches with DNA from maizeseq.org.
join(63..148,237..349,520..610,867..994,1234..1304,1431..1473,1562..1658,1802..1882,2203..2327,2411..2483,2584..2670) |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGAGCTCA ACAGCATCCC CTATATTGCG TCGTGGTCTT CCTCCTCGAG CTGCTTCTAC TACAGCTACA GTCGCTGCGC CTGCAGGTGA TGTTAGAGAA CTCTCGTTCC CGTACGCAAA
TGATGCAGTC TTGTCTGCAT GGAAGCAAAC GACCTGAGAA ATCCTTATGT ACAGAGGTAC AAGAGATGGG AAGCTGGTAA CAAAAGCTTC TGCAGCTGGT CGTAAGCGTG CTGCTGATTC
AGTATGTTCA CAACTCTCTG AGCAGGGAAC TGAAGATTCC ATTTCAGGTA CACATCGCTG TTCTTAGCCT CATATATCAC TTGGTTCCAA ACCGTTTTTT TGCTGGAGCT GTAAATATTT
TAATGACAAT GGGAAACTTT TTTGTTGCTT GGGCTGATGC CGGACCATGG AAATTTAGCA TGGTCAACTC AAAGTTTCTC TTCTCTGGTG GTTCCAGGTC CTAGATCTTC CTGGCGTATA
AGGAGGAGAG ACCTTGCTTC TGCCATTTTA CTCCCTTTTC TGATTCCTCG TGTTAACATC TCTATCGCGT AAGTAGTGCA TTATTATCAA AGAATTTAGC TATCCAGCTC TTGAAATTAC
TAGCTGACAT TCAAAAGAGC GTCTTCTTGA TGTTTCAAAT GGTAAATACT GTGAGAAAGG GGAAGCATGT AATGAGCCAC AGTTGAATCT TGTAGACATA GGACAGTGAT CTAGTAAAGG
AAAGATCCTT AAATCTGGTT TCTTGCTCCT AAAACAGTGA TGCCATTGCC ATCTATATGA GAAGTTATCT GGTTGATTTC ACAGGGCTGA GATATACGAC GCATCAATTA TTCGAAGTGG
TGTGAGGAGT GTTTTAACCA AGGGCAAGGC TGCTGGTGTG CTTCGGTTGG TTTTCCATGA TGCAGGGACT TTTGAAATTG GGGACGGATC AGGTTAGCCT CTTTAGTGTG TTTGAGGGGA
AAAAAGCATT TGTGTACGAA AAAATGATCC AAAACGGTAT TGCTAAGAAG ATACAGAATT CTATTTTTAA AGGAAAGAAA TATCATCATT TGTGGTGCAT ACATCGGTAG GATTGCTACC
TGACTGCTAT ATTAGTTCAG CAAAGAGACA TGATATTAGT TCAGCAAAGA GACATGACTT TCGTCAGACT ACTAACAGTG ATACCTTCCA GGTGGCATGA ATGGCTCTAT AATTTATGAA
GTTGACAGGC CTGAAAACAT TGGCCTAAAT AGATCCATAA AGGTGGGTGC GTGTCTTTGT GACGATAAAT TGCTTTATCT TTACTCGTTT TCTTGAAGAA TATCATATCC TTCTTGATGT
CGTATTTCCT TCAGTTGACG TCTACTTAAT CACATCATAA CTGAACAGAT ACTAAGAAAA GCAAAAGAAG GAATCGACAA CGTTCAGAAA GGTATGTAAA CCATGCCATC TTCTGTCCTG
CACTTTCTTT ACGAAAACTC CAGTTTGGGA GTCAAATCTC CTGCTGTTTG CGCTGACAGT GTCGTGGGCG GATCTGATTG CCGTGGCTGG CGCTGAGGCA GTTGCGCTCT GTGGCGGGCC
TGAGATTCCA GTAAGGCTAG GAAGAGTAGA TTCTAGGTGA GAAATCACAG TGATTTTTTT TATTTTACTC CTCCAACTTA CAGTTTTAAG AAAGCTATGT ATGTATATAA ATATTCCAGA
TTGTGTAGTG TCTTTGTATC AGTCAGTTTT CTGAAGAACA TGGGTTATTT TTGCAACAGT GCTGACCCTA GTGGAAAAGT TCCTGAAGAA ACATTGGAGG GGGGGTCCTT GAAGACATTA
TTAAGCGCCA AGGGCTCTTC GTGAGATGCC CCCCACCCTA AAAGGGGGGG GGAGGAACTA GAAACTAATG CGGTTCTGCT ATTGAAAAAA AGGAGAAAAA GACCATnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnAGAT CCCCCCTTTT TTTTGTCAAA TTAAATATAC
ATACGCATTC CAGTTCTCAA TTTAATCCCC TGTGGCTTGC AGCCATTGTT CCCATATCCA TGTCTGAAAT CCATGTTTGG CGATTAACGA CAGGGCGCAG GGAGCTGGTT GTTTTGTCGG
GAGCGCACAC GATTGGAGGG AAAAGGGTTT CGGGAGTCCC AGTTGTTTTC GACAACACCT ATTTCAAGGT GCTGCTCGAT AATAGGCCGC CGCAGACATC TTCGAGTAAG TGCATCTTCC
TCACCAATTG CTTTTGATTG ATGTCTATGC TTTTATCAGA ACTTACTGCG TGTTCCTCTG TGAAGAAGCT GGCAATGGCA TGGCGGCGAT GGTTGGGCTG CGCACGGACT GGGCGCTCAC
TGAAGACGAC GAGTGCTTGA GGTAGTTTAT GAAACCTCAG CTACCTCGGT TTCTGAAGAC ACCAAGAAAA TGCTAGATGC TCCATCAGCT TAATGACGCT GCGTATGTTT GAAACCTGCA
GATGGATCAG GATCTACGCA GAGGACCAAG CTAGGTTCTT CGACGACTTC AGGGACACGT ACATCAAGCT CGTAGACAGC GGAGCCTCGT GGAGAACAGC TTGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGAGCTCA ACAGCATCCC CTATATTGCG TCGTGGTCTT CCTCCTCGAG CTGCTTCTAC TACAGCTACA GTCGCTGCGC CTGCAGAGGT ACAAGAGATG GGAAGCTGGT AACAAAAGCT
TCTGCAGCTG GTCGTAAGCG TGCTGCTGAT TCAGTATGTT CACAACTCTC TGAGCAGGGA ACTGAAGATT CCATTTCAGG TCCTAGATCT TCCTGGCGTA TAAGGAGGAG AGACCTTGCT
TCTGCCATTT TACTCCCTTT TCTGATTCCT CGTGTTAACA TCTCTATCGC GGCTGAGATA TACGACGCAT CAATTATTCG AAGTGGTGTG AGGAGTGTTT TAACCAAGGG CAAGGCTGCT
GGTGTGCTTC GGTTGGTTTT CCATGATGCA GGGACTTTTG AAATTGGGGA CGGATCAGGT GGCATGAATG GCTCTATAAT TTATGAAGTT GACAGGCCTG AAAACATTGG CCTAAATAGA
TCCATAAAGA TACTAAGAAA AGCAAAAGAA GGAATCGACA ACGTTCAGAA AGTGTCGTGG GCGGATCTGA TTGCCGTGGC TGGCGCTGAG GCAGTTGCGC TCTGTGGCGG GCCTGAGATT
CCAGTAAGGC TAGGAAGAGT AGATTCTAGT GCTGACCCTA GTGGTAAACT TCCTGAAGAA ACATTGGACG CAGCTTCCTT GAAGACATTA TTCAGCAAGA AGGGCTTTTC GGCGCAGGAG
CTGGTTGTTT TGTCGGGAGC GCACACGATT GGAGGGAAAG GGTTCGGGAG TCCAGTTGTT TTCGACAACA CCTATTTCAA GGTGCTGCTC GATAATAGGC CGCCGCAGAC ATCTTCGACT
GGCAATGGCA TGGCGGCGAT GGTTGGGCTG CGCACGGACT GGGCGCTCAC TGAAGACGAC GAGTGCTTGA GATGGATCAG GATCTACGCA GAGGACCAAG CTAGGTTTTT CGACGACTTC
AGGGACACGT ACATCAAGCT CGTAGACAGC GGAGCCTCGT GGAGAACAGC TTGA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CTTTTCATTT CAGAGCTGTG GTAGACTGGT AGGTTGGTAG CTGTTACTGA AAAACTAAGA GAAGGCAGGA CGGGGAAAGG AGATGGAGCT CAACAGCATC CCCTATATTG CGTCGTGGTC
TTCCTCCTCG AGCTGCTTCT ACTACAGCTA CAGTCGCTGC GCCTGCAGAG GTACAAGAGA TGGGAAGCTG GTAACAAAAG CTTCTGCAGC TGGTCGTAAG CGTGCTGCTG ATTCAGTATG
TTCACAACTC TCTGAGCAGG GAACTGAAGA TTCCATTTCA GGTCCTAGAT CTTCCTGGCG TATAAGGAGG AGAGACCTTG CTTCTGCCAT TTTACTCCCT TTTCTGATTC CTCGTGTTAA
CATCTCTATC GCGGCTGAGA TATACGACGC ATCAATTATT CGAAGTGGTG TGAGGAGTGT TTTAACCAAG GGCAAGGCTG CTGGTGTGCT TCGGTTGGTT TTCCATGATG CAGGGACTTT
TGAAATTGGG GACGGATCAG GTGGCATGAA TGGCTCTATA ATTTATGAAG TTGACAGGCC TGAAAACATT GGCCTAAATA GATCCATAAA GATACTAAGA AAAGCAAAAG AAGGAATCGA
CAACGTTCAG AAAGTGTCGT GGGCGGATCT GATTGCCGTG GCTGGCGCTG AGGCAGTTGC GCTCTGTGGC GGGCCTGAGA TTCCAGTAAG GCTAGGAAGA GTAGATTCTA GTGCTGACCC
TAGTGGTAAA CTTCCTGAAG AAACATTGGA CGCAGCTTCC TTGAAGACAT TATTCAGCAA GAAGGGCTTT TCGGCGCAGG AGCTGGTTGT TTTGTCGGGA GCGCACACGA TTGGAGGGAA
AGGGTTCGGG AGTCCAGTTG TTTTCGACAA CACCTATTTC AAGGTGCTGC TCGATAATAG GCCGCCGCAG ACATCTTCGA CTGGCAATGG CATGGCGGCG ATGGTTGGGC TGCGCACGGA
CTGGGCGCTC ACTGAAGACG ACGAGTGCTT GAGATGGATC AGGATCTACG CAGAGGACCA AGCTAGGTTT TTCGACGACT TCAGGGACAC GTACATCAAG CTCGTAGACA GCGGAGCCTC
GTGGAGAACA GCTTGACTAG AACTGCCTGT TTCTTTACAG TGTTAGGCCT TGTTCGGTTA TAAGGGAATA AATCCCCCCA TGGATTTAAT CCGGATCTGG ATTGGGTGAA TCCATATGTC
ACACCCAATC CTATGGTGGG ATTAAATACA CCATTTAATC CATGTATCTC TTAAAACTAG TTATTCTTTT GATTCATGGA TTTTAATATA AACTTGTGCA ACATCTTCAT GGATTTGCTC
CATACATAAT GAGCTATGGA TAGAATCCAT GCCTTTCATA GTTT
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Retrieve as FASTA
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