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Entry information : SsclLDS01
Entry ID 5856
Creation 2007-10-11 (Marcel Zamocky)
Last sequence changes 2007-10-11 (Marcel Zamocky)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-04-27 (Catherine Mathe (Scipio))
Peroxidase information: SsclLDS01
Name SsclLDS01
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Ascomycota Leotiomycetes Sclerotiniaceae Sclerotinia
Organism Sclerotinia sclerotiorum    [TaxId: 5180 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SsclLDS01
start..stop		 S start..stop
BfuLDS01 2219 0 73..1190 10..1127
CposLDS03_silveira 1300 0 102..1179 37..1111
CimLDS03 1293 0 102..1179 37..1111
AflLDS03 1242 0 56..1174 2..1118
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 450369..450459 89 N° 2 449672..450135 462 N° 3 449485..449624 138 N° 4 449032..449431 398
N° 5 448749..448984 234 N° 6 448609..448698 88 N° 7 447611..448557 945 N° 8 447355..447558 202
N° 9 446955..447303 347 N° 10 446726..446907 180 N° 11 446564..446673 108 N° 12 446147..446509 361
complement(join(446147..446509,446564..446673,446726..446907,446955..447303,4473 55..447558,447611..448557,448609..448698,448749..448984,449032..449431,449485..4 49624,449672..450135,450369..450459))


exon

Literature and cross-references SsclLDS01
Literature The Broad Institute Genome Sequencing Platform. Annotation of the Sclerotinia sclerotiorum 1980 genome.
Protein ref. GenBank:   XP_001588258.1 UniProtKB:   A7EZD8
DNA ref. JGI genome:   Supercontig_2.16 (450459..446147)
mRNA ref. GenBank:   XM_001588208
Protein sequence: SsclLDS01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1191 (295)
PWM (Da):   %s   132923.19 (31737.1) Transmb domain:   %s   o15-34i
PI (pH):   %s   6.95 (7.99) Peptide Signal:   %s   cut: 28 range:28-322
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MYYPASIVAHGRSYQIEGRASLVPFLGGLLEYFIELTAMMRRLSTVFKTKDKENTKSSPTTAENGATSSSPTGRRLTMGVSKKSNSGAASSNPQAFDGPDHSVKRAGIVGTLESLGKVISTANRPLNTETGDGSYDTKQEQTGLLDDLKS
LRIKDLETLQLTMKQELGTSKLTDDKSMLMERLILVANLPGTSKTRVKLTEVLVDELWGSLEHPPASMLGDKYNYRQADGSYNNIRFPDIGKAGTAYARSVTPKIVQPNPKPDPGLIFDT
IMSRENGGFKPHPNNVSSMLYYIASIIIHDCFRTSHEDFNVSMTSSYLDLSPLYGSNQDEQNNMRTLKDGELKPDCFSEKRLLGFPPGVGCILMFNRFHNYVVKQLATINENGRFTPPKD
NLPEDKKQAAWKKYDNDLFQTGRLITCGLYINIILLDYLRTIVGLNRVNSTWTLDPRIEMERNSKPGTVAGVGNQCAAEFNLVYRWHSCISQRDEKWSEDLYMKIFGKSHKEVSMQELLI
GLGKLEAMTPDDPLQRDFAGMKRGSDGKLSDDDLVKELTASIEDLAGSSGANNVPAVLRAVEILGMEQARAWKCATLNEFRKHFGLIPHEKFSDINSDPAVYEKLKVIYDDPDLVELYAG
LVCEDAKKPMDPGVGIGPTYTISRSILSDAVTLVRGDRFYTTDYHAANLTNWGITEVDYDLNVNQGCVFYKLFIRAFPNHFSFNSIYAHYPLTIPTENKKIMEKLGRVDDYSWEKPTRIP
ERKNVVTYDGVKSVLTNGEVFGVDNWRRGLAFLMGKGANFMLAGDGEFFAERRNQMKECLYQDKWQESVKNYYESIVPKLLKRWSYNIGGTTNQVDVIRDIDNSAHVYFASNIFHLPLKS
EENPKGVYTEHELYMVLAVIFIVIFFGDVDPAKTFSLRAAGLPVTQDLGQLVEQNVNFISKTSLVSGIVDNFMQENNALKDYGVHMVRHLLKAGLGVHETVWSQILPTAGAMVANQAQVF
GQVLDYYLGDGKEHLPEINRLAKLNTPEADDILLHYLLEGRMNGTFGAYRTCHQNITINDGSRKVECKPGDSVFTSVSLAQDPKIYPEPKKVRLDRPIDSYLVYGVGPHACLGGDASRVA
LTAMLKCIGRLDNLRRAPGPQGEMKKIPREGGFYVYMDKMMGSEFPFPTTMKICWDGGLNEPEAVGDKGKGKKMGL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns). Strain="1980". Regions: 226-689 peroxidase domain; 757-1148 "cypX" cytochrome P450 domain.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTACTATCCTGCATCAATCGTAGCACACGGCAGAAGCTATCAAATCGAGGGGAGAGCTTCCCTTGTCCCTTTCCTCGGCGGCTTACTAGGTAGCTCAGCTTCTCATCCTTTCCGACCT
CTTCCTTTTTCTTTCTCCTACATCACCACCACCTTTATATTCCAACAGTATCCCAATTGAATTGACCTCATGCGACAAAATTGTTTACTCTATTGTAACAATTGATCACTGATTTTCATG
TAAGCAATAAGTAACTCGATAAATTCTATATTACTTGTTAAATGCAATTTGTATTTTCGTTTAAGAACTAACAGTCTAGCATAGAAAATACTTCATCGAGTTAACCGCAATGATGAGACG
TCTTTCGACAGTGTTCAAGACTAAGGACAAGGAGAACACCAAATCTTCACCCACAACTGCCGAAAATGGGGCGACTTCCTCGAGCCCAACGGGACGTCGTTTGACGATGGGTGTGTCTAA
AAAGTCCAACAGTGGTGCTGCAAGCTCTAATCCCCAAGCATTTGACGGTCCCGATCATAGTGTAAAACGCGCTGGTATTGTGGGAACTCTTGAATCACTTGGGAAAGTCATCAGCACAGC
CAACCGTCCTTTAAATACCGAAACTGGAGATGGCTCCTATGACACAAAACAGGAACAGACGGGTTTATTGGATGATCTCAAATCATTAAGAATCAAGGATTTGGAAACATTGCAGTTGAC
CATGAAGCAAGAATTGGGAACCTCAAAATTGACGGACGACAAGAGCATGCTAATGGAAAGGCTCATCCAGGTAAACTTGGGCCTTAATTTGTTCACACAAAAGCTAATACTAAAAAGTTT
TGGTTGCAAATCTTCCTGGAACTTCCAAGACTCGGGTCAAGCTTACCGAAGTACTGGTTGATGAATTATGGGGCTCTTTGGAACATCCACCAGCTTCAATGCTTGGTGACAAGTACAATT
ATCGACAAGCTGATGGCTCGTGAGTGTATTACGAGAACTATCAACACCTTTCTCACTAATCCTTGTCCTTAGATATATAATAACATCAGGTTTCCCGATATTGGAAAAGCAGGTACAGCT
TACGCCCGAAGTGTCACTCCCAAGATCGTTCAGCCAAACCCAAAACCAGATCCGGGTCTTATATTCGACACGATCATGAGTCGAGAGAATGGTGGTTTCAAGCCTCATCCAAACAATGTC
TCCAGTATGCTTTACTACATTGCAAGTATTATCATTCATGACTGCTTTCGCACGTCACACGAAGATTTTAATGTTTCAATGACCTCCTCTTATTTGGATCTTTCTCCTTTATATGGAAGC
AACCAGGATGAGCAGAATAATATGCGAACTCTTAAGGATGGAGAGCTTAAGCCGGATTGTTTCTCCGAAAAGAGATTATTAGGCTTCCCTCCAGGAGTTGGATGCATCCTTATCGTGAGT
GACTCGCTGAAGATTACAGGCCAGGAACTAAAACTGTGTAGATATGTTCAACCGTTTTCATAACTATGTGGTCAAACAATTGGCAACAATCAATGAGAATGGACGCTTTACACCCCCCAA
GGATAATCTACCTGAGGATAAAAAGCAAGCAGCCTGGAAGAAATACGACAATGACCTCTTCCAGACTGGACGTCTTATTACTTGCGGCCTCTACATCAACATTATTCTGCTCGATTATCT
ACGCACAATTGTTGGATTGAATAGGGTCAATTCTACCTGGTCAGTATCATTTATATAGGTAGGAAATGTTTTTGACTAATCGACATTAGGAGACTCTCGATCCTCGTATCGAAATGGAAA
GAAATAGCAAGCCGGGAACCGTTGCTGGAGTCGGTAATCAATGTGCTGCTGAATTCAATCTGTAAGCTTTTTCAGCATCTGTCTTTTTGTACTTAGAGCTGATTCTTTATAGCGCGTATA
CCGATGGCATTCCTGCATTAGTCAACGCGACGAGAAGTGGTCCGAAGATTTGTACATGAAAATCTTTGGGAAGAGCCACAAGGAAGTTTCTATGCAGGAACTCCTCATTGGCTTGGGTAA
GCTTGAAGCAATGACTCCAGACGATCCTCTACAAAGAGACTTTGCTGGTATGAAGAGAGGTAGCGATGGGAAGCTCAGTGATGATGATCTCGTTAAGGAATTGACTGCGAGCATCGAAGA
TTTGGCTGGGTCATCAGGAGCGAATAACGTTCCTGCAGTACTTCGTGCTGTTGAAATCCTCGGGATGGAGCAAGCTCGTGCATGGAAGTGTGCAACTCTAAACGAATTCCGGAAACACTT
TGGTCTCATACCACATGAAAAGTTCTCAGATATCAACTCGGATCCAGCGGTCTATGAGAAATTGAAGGTTATATACGATGATCCAGATTTGGTCGAACTTTACGCTGGATTGGTTTGTGA
GGATGCTAAGAAGCCGATGGATCCAGGTGTTGGTATCGGACCAACCTACACAATCAGTCGAAGTATTCTTTCTGACGCAGTGACACTGGTTCGTGGAGACAGATTTTATACTACCGACTA
TCATGCAGCAAATCTCACGAACTGGGGAATTACTGAAGTCGATTATGATTTGAACGTCAACCAAGGCTGCGTATTTTACAAACTATTCATTCGAGCTTTCCCCAATCACTTCTCATTTAA
CAGTATCTATGCTCATTACCCTCTAACAATCCCGACGGAAAACAAGAAGATCATGGAGAAACTTGGTCGCGTAGATGACTATAGCTGGGAGAAACCAACAAGGATTCCCGAGAGAAAGAA
TGTTGTCACTTATGATGGAGTCAAGAGTGTTCTCACTAATGGAGAAGTATTTGGTGTTGACAACTGGCGCAGAGGTCTCGCTTTTCTCATGGGAAAACCAGGTATTTAAAATTGTTTCAG
AAGCCATACAATCCAATACTAATATAATCTTAGGGGGGCCAATTTTATGTTGGCTGGTGATGGCGAGTTCTTTGCCGAGCGACGCAACCAAATGAAGGAATGCCTCTACCAAGATAAATG
GCAAGAAAGTGTGAAGAACTATTACGAAAGTATTGTCCCAAAACTTCTCAAGAGATGGTCTTATAATATTGGAGGCACAACTAACCAGGTTGATGTCATTCGCGATATTGATAATTCCGG
TGAGTTACACGTTCATTCTAACGCAGTCATTTTTATCTAACATAAACTAGCTCTCATGTTTACTTTGCCTCGAACATCTTCCACCTTCCCCTCAAAAGTGAAGAGAATCCTAAAGGCGTA
TATACCGAGCATGAGTTGTATATGGTTTTAGCCGTTATCTTCATTGTAATATTTTTCGGTGATGTCGATCCAGCGAAAACCTTCTCATTACGTGCCGCTGGTCTTCCAGTTACACAAGAT
CTCGGTCAACTAGTCGAGCAGAATGTGAACTTTATTTCAAAGACAAGCCTCGTATCAGGTATTGTTGATAATTTCATGCAGGAAAATAATGCCCTCAAAGATTATGGTGTACACATGGTG
CGCCATTTGTTGAAGGCTGGTTTGGGTGTTCATGAGACTGTGTTAGTAGTTCTTTTAATCACTCACTATTTTTACTGACATTGCATAGATATGGTCACAAATTTTGCCTACAGCAGGAGC
CATGGTGGCGAACCAAGCACAAGTTTTTGGTCAAGTACTCGACTATTATCTTGGTGATGGAAAGGAGCATCTTCCAGAAATTAATCGTCTTGCGAAGCTCAATACGCCTGAAGCAGATGA
TATCCTCTTACATTACCTTCTGGAAGGAATCAGTGAGCAATAGATTCAAATTTTCTCATTCAAACTAGTGCTAACAATGTCAAGGAGAATGAACGGCACATTTGGTGCTTATCGCACATG
TCATCAAAATATCACCATCAACGACGGATCACGAAAAGTCGAATGCAAGCCCGGTGACTCTGTCTTCACAAGTTTTGTATGTGTCTCCTTTCCAATACCTACGCACCTAAAAATCTCTAA
CAAATTCCAGGTGTCTCCCTAGCCCAAGATCCCAAAATCTACCCCGAACCCAAGAAAGTCCGTCTAGACCGACCAATCGACTCTTACCTCGTCTACGGCGTCGGTCCACACGCTTGTCTC
GGTGGCGACGCTTCACGCGTCGCTCTCACCGCTATGCTCAAATGTATCGGACGACTCGACAATCTTCGCAGAGCACCAGGTCCTCAGGGTGAAATGAAGAAAATCCCTCGAGAAGGTGGT
TTTTATGTTTACATGGATAAGATGATGGGCTCGGAATTCCCATTCCCGACTACTATGAAGATTTGTTGGGATGGGGGGTTGAATGAACCGGAGGCAGTGGGGGATAAGGGGAAGGGGAAG
AAGATGGGTCTTTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTACTATCCTGCATCAATCGTAGCACACGGCAGAAGCTATCAAATCGAGGGGAGAGCTTCCCTTGTCCCTTTCCTCGGCGGCTTACTAGAATACTTCATCGAGTTAACCGCAATGATG
AGACGTCTTTCGACAGTGTTCAAGACTAAGGACAAGGAGAACACCAAATCTTCACCCACAACTGCCGAAAATGGGGCGACTTCCTCGAGCCCAACGGGACGTCGTTTGACGATGGGTGTG
TCTAAAAAGTCCAACAGTGGTGCTGCAAGCTCTAATCCCCAAGCATTTGACGGTCCCGATCATAGTGTAAAACGCGCTGGTATTGTGGGAACTCTTGAATCACTTGGGAAAGTCATCAGC
ACAGCCAACCGTCCTTTAAATACCGAAACTGGAGATGGCTCCTATGACACAAAACAGGAACAGACGGGTTTATTGGATGATCTCAAATCATTAAGAATCAAGGATTTGGAAACATTGCAG
TTGACCATGAAGCAAGAATTGGGAACCTCAAAATTGACGGACGACAAGAGCATGCTAATGGAAAGGCTCATCCAGTTGGTTGCAAATCTTCCTGGAACTTCCAAGACTCGGGTCAAGCTT
ACCGAAGTACTGGTTGATGAATTATGGGGCTCTTTGGAACATCCACCAGCTTCAATGCTTGGTGACAAGTACAATTATCGACAAGCTGATGGCTCATATAATAACATCAGGTTTCCCGAT
ATTGGAAAAGCAGGTACAGCTTACGCCCGAAGTGTCACTCCCAAGATCGTTCAGCCAAACCCAAAACCAGATCCGGGTCTTATATTCGACACGATCATGAGTCGAGAGAATGGTGGTTTC
AAGCCTCATCCAAACAATGTCTCCAGTATGCTTTACTACATTGCAAGTATTATCATTCATGACTGCTTTCGCACGTCACACGAAGATTTTAATGTTTCAATGACCTCCTCTTATTTGGAT
CTTTCTCCTTTATATGGAAGCAACCAGGATGAGCAGAATAATATGCGAACTCTTAAGGATGGAGAGCTTAAGCCGGATTGTTTCTCCGAAAAGAGATTATTAGGCTTCCCTCCAGGAGTT
GGATGCATCCTTATCATGTTCAACCGTTTTCATAACTATGTGGTCAAACAATTGGCAACAATCAATGAGAATGGACGCTTTACACCCCCCAAGGATAATCTACCTGAGGATAAAAAGCAA
GCAGCCTGGAAGAAATACGACAATGACCTCTTCCAGACTGGACGTCTTATTACTTGCGGCCTCTACATCAACATTATTCTGCTCGATTATCTACGCACAATTGTTGGATTGAATAGGGTC
AATTCTACCTGGACTCTCGATCCTCGTATCGAAATGGAAAGAAATAGCAAGCCGGGAACCGTTGCTGGAGTCGGTAATCAATGTGCTGCTGAATTCAATCTCGTATACCGATGGCATTCC
TGCATTAGTCAACGCGACGAGAAGTGGTCCGAAGATTTGTACATGAAAATCTTTGGGAAGAGCCACAAGGAAGTTTCTATGCAGGAACTCCTCATTGGCTTGGGTAAGCTTGAAGCAATG
ACTCCAGACGATCCTCTACAAAGAGACTTTGCTGGTATGAAGAGAGGTAGCGATGGGAAGCTCAGTGATGATGATCTCGTTAAGGAATTGACTGCGAGCATCGAAGATTTGGCTGGGTCA
TCAGGAGCGAATAACGTTCCTGCAGTACTTCGTGCTGTTGAAATCCTCGGGATGGAGCAAGCTCGTGCATGGAAGTGTGCAACTCTAAACGAATTCCGGAAACACTTTGGTCTCATACCA
CATGAAAAGTTCTCAGATATCAACTCGGATCCAGCGGTCTATGAGAAATTGAAGGTTATATACGATGATCCAGATTTGGTCGAACTTTACGCTGGATTGGTTTGTGAGGATGCTAAGAAG
CCGATGGATCCAGGTGTTGGTATCGGACCAACCTACACAATCAGTCGAAGTATTCTTTCTGACGCAGTGACACTGGTTCGTGGAGACAGATTTTATACTACCGACTATCATGCAGCAAAT
CTCACGAACTGGGGAATTACTGAAGTCGATTATGATTTGAACGTCAACCAAGGCTGCGTATTTTACAAACTATTCATTCGAGCTTTCCCCAATCACTTCTCATTTAACAGTATCTATGCT
CATTACCCTCTAACAATCCCGACGGAAAACAAGAAGATCATGGAGAAACTTGGTCGCGTAGATGACTATAGCTGGGAGAAACCAACAAGGATTCCCGAGAGAAAGAATGTTGTCACTTAT
GATGGAGTCAAGAGTGTTCTCACTAATGGAGAAGTATTTGGTGTTGACAACTGGCGCAGAGGTCTCGCTTTTCTCATGGGAAAACCAGGGGCCAATTTTATGTTGGCTGGTGATGGCGAG
TTCTTTGCCGAGCGACGCAACCAAATGAAGGAATGCCTCTACCAAGATAAATGGCAAGAAAGTGTGAAGAACTATTACGAAAGTATTGTCCCAAAACTTCTCAAGAGATGGTCTTATAAT
ATTGGAGGCACAACTAACCAGGTTGATGTCATTCGCGATATTGATAATTCCGCTCATGTTTACTTTGCCTCGAACATCTTCCACCTTCCCCTCAAAAGTGAAGAGAATCCTAAAGGCGTA
TATACCGAGCATGAGTTGTATATGGTTTTAGCCGTTATCTTCATTGTAATATTTTTCGGTGATGTCGATCCAGCGAAAACCTTCTCATTACGTGCCGCTGGTCTTCCAGTTACACAAGAT
CTCGGTCAACTAGTCGAGCAGAATGTGAACTTTATTTCAAAGACAAGCCTCGTATCAGGTATTGTTGATAATTTCATGCAGGAAAATAATGCCCTCAAAGATTATGGTGTACACATGGTG
CGCCATTTGTTGAAGGCTGGTTTGGGTGTTCATGAGACTGTATGGTCACAAATTTTGCCTACAGCAGGAGCCATGGTGGCGAACCAAGCACAAGTTTTTGGTCAAGTACTCGACTATTAT
CTTGGTGATGGAAAGGAGCATCTTCCAGAAATTAATCGTCTTGCGAAGCTCAATACGCCTGAAGCAGATGATATCCTCTTACATTACCTTCTGGAAGGAATCAGAATGAACGGCACATTT
GGTGCTTATCGCACATGTCATCAAAATATCACCATCAACGACGGATCACGAAAAGTCGAATGCAAGCCCGGTGACTCTGTCTTCACAAGTTTTGTCTCCCTAGCCCAAGATCCCAAAATC
TACCCCGAACCCAAGAAAGTCCGTCTAGACCGACCAATCGACTCTTACCTCGTCTACGGCGTCGGTCCACACGCTTGTCTCGGTGGCGACGCTTCACGCGTCGCTCTCACCGCTATGCTC
AAATGTATCGGACGACTCGACAATCTTCGCAGAGCACCAGGTCCTCAGGGTGAAATGAAGAAAATCCCTCGAGAAGGTGGTTTTTATGTTTACATGGATAAGATGATGGGCTCGGAATTC
CCATTCCCGACTACTATGAAGATTTGTTGGGATGGGGGGTTGAATGAACCGGAGGCAGTGGGGGATAAGGGGAAGGGGAAGAAGATGGGTCTTTGA

Retrieve as FASTA