Entry information : MtPrx01 (Rip1 / Medtr5g074860.1[4.0] / Medtr5g074860.1[3.5] / Medtr5g082780.1[3.0])
Entry ID 59
Creation 2006-09-06 (Christophe Dunand)
Last sequence changes 2010-09-14 (Haythem Mhadhbi)
Sequence status complete
Reviewer Bruno Savelli
Last annotation changes 2017-08-08 (Bruno Savelli)
Peroxidase information: MtPrx01 (Rip1 / Medtr5g074860.1[4.0] / Medtr5g074860.1[3.5] / Medtr5g082780.1[3.0])
Name (synonym) MtPrx01 (Rip1 / Medtr5g074860.1[4.0] / Medtr5g074860.1[3.5] / Medtr5g082780.1[3.0])
Class Class III peroxidase    [Orthogroup: Prx010]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Immature seeds
Pods
Roots
Inducers Pathogen interaction
Phytophthora infection
Rhizobium inoculation
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx01
start..stop
S start..stop
GmPrx62 529 0 1..324 33..358
GmPrx120 516 0 11..324 6..322
PvPrx10 507 0 8..324 9..326
GmPrx70 497 3.57e-179 20..324 18..324
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '59' 'complement(join(31797488..31798048,31798223..31798417,31799302..31799523))' Exons


exon

Literature and cross-references MtPrx01 (Rip1 / Medtr5g074860.1[4.0] / Medtr5g074860.1[3.5] / Medtr5g082780.1[3.0])
Literature Transient induction of a peroxidase gene in Medicago truncatula
precedes infection by Rhizobium meliloti. Plant Cell 7 (1), 43-55 (1995)
Protein ref. UniProtKB:   Q40372
DNA ref. Phytozome 12:   chr5 (31799523..31797488)
Cluster/Prediction ref. Phytozome Gene 12:   31090495 UniGene:   Mtr.12647
Omic ref. Gene atlas:   Mtr.25211.1.S1_at Legoo:   Mtr.25211.1.S1_at
Other ref. Medicago_jcvi:   23235
Protein sequence: MtPrx01 (Rip1 / Medtr5g074860.1[4.0] / Medtr5g074860.1[3.5] / Medtr5g082780.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (304)
PWM (Da):   %s   35503.44 (33262.3) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.61 (9.74) Peptide Signal:   %s   cut: 22 range:22-325
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSSPCQIFLVFVMVTLVTSLIPSNALLTPHFYDNVCPQALPTI
KSVVLHAILREKRIGASLLRLHFHDCFVN
GCDGSVLLDDTPNFTGEKTALPNINSIRGFSVVDEIKAAVDKVCKGPVVSCADILATAARDSVAILGGPQFFYNVLLGRRDARTASKAAANANLPSPTFNFSQLISNFKSQGLNVKDLVA
LSGGHTIGFARCTTFRNRIYNETNIDPIFAASLRKTCPRNGGDNNLTPLDFTPTRVENTYYRDLLYKRGVLHSDQQLFKGQGSESDKLVQLYSKNTFAFASDFKTSLIKMGNIKPLTGRQ
GEIRLNCRRVR*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, introns 1 and 2), 26 ESTs. Transcript variant predicted by Phytozome (extra intron and lack of VALS).
Promoter
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Send to cis Analysis
Terminator +
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Send to cis Analysis
DNA
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CDS
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cDNA
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