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Entry information : PtRboh01 (POPTR_0001s12650 / Potri.001G070900)
Entry ID 6073
Creation 2008-01-28 (Christophe Dunand)
Last sequence changes 2010-07-15 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtRboh01 (POPTR_0001s12650 / Potri.001G070900)
Name (synonym) PtRboh01 (POPTR_0001s12650 / Potri.001G070900)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh01
start..stop		 S start..stop
PtRboh04 1693 0 1..926 1..926
AgluRboh02 1533 0 2..926 1..931
CsRboh02 1513 0 2..926 1..912
CclRboh02 1513 0 2..926 1..912
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 9800583..9801177 593 N° 2 9801261..9801423 161 N° 3 9801525..9801573 47 N° 4 9801765..9801878 112
N° 5 9802081..9802509 427 N° 6 9802594..9802980 385 N° 7 9803092..9803187 94 N° 8 9803297..9803412 114
N° 9 9803541..9803643 101 N° 10 9803734..9803804 69 N° 11 9803994..9804541 546 N° 12 9804673..9804782 108
join(9800583..9801177,9801261..9801423,9801525..9801573,9801765..9801878,9802081 ..9802509,9802594..9802980,9803092..9803187,9803297..9803412,9803541..9803643,98 03734..9803804,9803994..9804541,9804673..9804782)


exon

Literature and cross-references PtRboh01 (POPTR_0001s12650 / Potri.001G070900)
Protein ref. UniProtKB:   B9GMW7
DNA ref. Phytozome 12:   scaffold_1 (9800583..9804782)
Omic ref. ePlant:   Potri.001G070900
Protein sequence: PtRboh01 (POPTR_0001s12650 / Potri.001G070900)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   926
PWM (Da):   %s   103903.26 Transmb domain:   %s   o366-385i507-529o549-571i730-747o
PI (pH):   %s   9.32
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MIRSEGLRGAYSEDSSDTESTASDRTAFSGPLGSGGGGLLNKKHSSKKSAGFNIPPETTINSGFTDDSSSFVEITLDICDDSVAVHSVQGANEDPELTLLAKTALEGNNSSSLRSSLFRN
TSSKIRQVSQELKRFASRRSSTARRFDRTKSAAAHALKGLKFITAKTGNGWPAVEKRFQELTASTDGLLPCSLFGECIGMNKDSKEFANELFRALARRHNTNGDSINKAQLRQFWDQIAD
ESFDSRLQTFFDMVDKDADGRITEEEVLIISLSASANKLSNIQKQAKEYAALIMEELDPDNAGYIMIYNLETLLLQASTQSFRVSDSRVLSELLSQKLKPTQENNPLKRWYPKVKYFLMD
NWQRVWIMMLWMGIVAGLFTYKFIEYRHNKAAYDVMGYCVCVAKGGAETLKFNMALILLPVCRNTITWLRNKTKLGVAVPFDDNLNFHKVIAVGIAIGTGLHAGAHITCDFPRLLHATEK
EYEPLKPYFGDEQPDNYGWFLKGVEGITGIIMVVLMAIAFTLATPWFRRNRLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLVVHGIYLYLTKTWYKKTTWIYLAVPVILYACERLIRAFR
SSTRAVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFQWHPFSITSSPGDDYLSVHIRTLGDWTRQLQTVFSVCQPPPAGKSGLLRADMQGENNPSFPKILIDGPFGAPA
QEYKKYDVVLLVGLGIGATPMVSIVKDIINNKKLKDKDGEDNGALEGLESGRGPPNKNKISTSRSFKTRKAYFYWVTREQGSFEWFKEIMNEVAEMDDKQVIEMHNYCTSVYEEGDARSA
LIAMLQSLNHAKNGVDVVSGTRVKSHFAKPIWRQVYKKIALRHPDARGVFYCGAPALTKELRQLALDFSHKTSTEFDFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 1, 11 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATCAGAAGCGAGGGCTTGAGGGGAGCTTATTCTGAGGACAGTTCGGACACAGAAAGCACAGCAAGTGACAGAACAGCTTTTAGTGGGCCTTTAGGTTCAGGAGGAGGAGGACTTCTC
AATAAAAAGCATTCTTCCAAGAAGAGCGCGGGGTTCAATATTCCTCCTGAAACCACCATAAATTCCGGCTTCACTGACGATTCATCTTCCTTTGTAGAGATTACTTTGGATATTTGTGAC
GATTCTGTGGCGGTTCACAGCGTTCAGGGTGCTAATGAGGATCCCGAATTGACTTTGCTGGCGAAGACAGCGCTAGAGGGAAACAATTCCTCTTCGCTGCGGTCTTCCTTGTTTAGGAAC
ACATCGTCCAAAATCAGGCAGGTCTCTCAGGAGCTAAAACGTTTCGCTTCAAGAAGGTCATCCACAGCTAGACGGTTTGATAGGACTAAGTCAGCTGCTGCTCATGCCTTGAAGGGACTT
AAGTTCATTACTGCTAAAACTGGAAATGGATGGCCTGCTGTTGAGAAGCGATTTCAAGAACTTACTGCCTCTACCGATGGCCTCCTTCCATGTTCCTTGTTTGGCGAATGCATAGAGGTG
AGTACCGCTGTTGGCTATTAACTTATTCATCCTCCTTCTGCGATTGTTTGCTTACTGATCACTATATTTGTATATGACAGGTATGAACAAGGACTCTAAGGAATTTGCGAATGAATTATT
TCGTGCACTTGCTCGGAGACATAACACAAATGGTGATTCAATTAACAAGGCACAGCTTAGACAGTTCTGGGATCAGATTGCTGATGAAAGCTTTGACTCTAGGCTCCAAACATTCTTTGA
CATATGTAAAGTGTTTAATATTAGTTGAACGGTTCTTTTTCCCTCTGAATTGTTGTCTATGTTGTTGATTAACAGTGACGTGTTTAATATTCGATAATCTGTGCAGGGTTGATAAAGATG
CTGATGGAAGAATAACAGAAGAAGAAGTTTTGGAGAGGTAAGCTTCGAATGAATATTTTATTAACGTGGACCCGTTCAAACCAACCAAAAAAACATCACTCAATATGCACGATTCTTCTT
CTTCTTTTCGACAAGATGAACGGAATAAATTAATCGTGATTGTTTTATCGACTTTATTTCTTACATACCATTAGCAGTTGTGATTGACCATATCAAATTTATTTGTAGATTATCAGTCTA
AGTGCTTCTGCAAACAAGCTCTCCAACATTCAGAAACAAGCCAAGGAGTATGCTGCACTGATTATGGAAGAATTAGACCCAGATAATGCTGGATACATCATGTGGTACAGCACACAAAAG
TTTCCTATAATTAAACGACAGCAAATGTTCATTTATTTTTCCGGGCATAATTATTATTATTTTTAAAATAATATAAATTATATCTTAAAATTTTACTATAGATTATGTTTTTAAATTGAA
CTGTTTTTTTAATATAATATCATAGATTTTTGACATGAAAATTGTTGTTTTCGTGTCAATAAACAGATTTATAACTTGGAAACATTACTATTGCAAGCTTCAACCCAATCCTTCAGAGTT
AGCGATAGCCGAGTTCTGAGTGAATTACTTAGCCAAAAGCTGAAGCCTACACAAGAGAACAATCCATTAAAGAGATGGTACCCAAAAGTCAAGTACTTTTTGATGGATAACTGGCAGAGA
GTTTGGATAATGATGTTGTGGATGGGTATCGTTGCCGGTTTATTTACTTACAAGTTCATAGAGTATCGACACAATAAGGCCGCATACGATGTAATGGGCTATTGCGTTTGTGTTGCCAAA
GGAGGGGCAGAGACCCTTAAATTCAATATGGCCTTGATTTTACTACCAGTCTGCCGGAACACCATTACTTGGCTGCGAAACAAGACCAAATTGGGAGTAGCTGTGCCTTTTGATGACAAT
CTAAATTTCCACAAGAGGTAATGAAACTAATCTATTCCATATTATGTTCGAGAAGTCTGCATGATCTTAAAATCTAAGGATGCTTGTTATGATTTGTTTAGGTTATTGCAGTAGGAATTG
CCATTGGAACTGGATTACATGCAGGGGCTCATATAACGTGTGATTTTCCCCGACTTCTTCACGCCACTGAAAAAGAATACGAGCCTCTGAAACCTTACTTTGGAGATGAGCAACCTGATA
ACTACGGGTGGTTTTTGAAAGGTGTGGAGGGGATCACAGGCATTATAATGGTAGTGCTAATGGCCATAGCATTCACATTAGCCACGCCATGGTTCCGGCGTAACAGGCTCAACCTGCCTA
AACCTCTCAAGAAACTCACTGGCTTCAATGCCTTCTGGTATTCCCACCATCTGTTCGTTATTGTCTACACTCTCCTCGTGGTCCATGGAATTTACCTCTACCTCACAAAGACATGGTATA
AGAAAACGCGGTTAGTGCTTTGCTCCTCCCTTGCGTCGCAACTGAATTAAGAATTTGCTTCTTTTCTACCTCTTAAGTTGTTATAAATAAACAATCCATTTCCAATTTTTCTTGACTGCA
GACATGGATCTACCTAGCAGTGCCGGTTATCCTTTATGCGTGTGAAAGGTTGATCAGGGCTTTTAGATCAAGCACCAGAGCTGTTAAGATTCTCAAGAGGTATGGTACAATGAAGTCTAT
ATGAATTACGTACTACTTATCTTCAACTTCTACTGGCTAATCTGTACCATACTGAAGACCAGTATTTTGTCCATGAACACTTTACCAGGTTGCCGTCTATCCTGGAAACGTCCTGGCATT
GCACATGTCAAAGCCCCAGGGCTTCAAATACAAAAGTGGGCAGTACATGTTTGTCAACTGCGCTGCAGTTTCTCCATTTCAATGTGGTAAGTTAATTTAATTTCCGTGGCAGATTGCTAG
CTGGTGCCCACTTAATTATGCCAAAGAAACCCAATCCAATTACATTGTATAATTATTGACCTTGGACGCTAATGCATAGTTGGTATGAACACAGGCACCCATTCTCTATCACTTCTTCGC
CAGGAGATGACTACCTGAGCGTGCACATTCGAACACTCGGTGATTGGACGAGGCAACTCCAAACTGTTTTCTCTGAGAGGTCTGTTGTTAGCTAATGACTACATCATGCAAACCAAATTT
CCTTCGTGTTTTGTTCCGAACAATCTCTTATGTTTTCAATGGTTGTTAGGTTTGTCAGCCTCCACCTGCTGGGAAGAGTGGATTACTCAGAGCTGATATGCAAGGAGAAAACAATCCTAG
AGGTAAATTAAGATGTCTAATCAGCCTTCTTCTTCAATGACTCTTTTCTTTACTTATTCGAGAACTTGTGCCAGTTACATTTATGAGGTTTATGGGCTGTCTCATTTGGAATATTGGTCA
TCCATAATAGAAGAGTAGTTTTATTGCCTTGAACATGTCAATGACAAGTGGAGATTAAATGAATGTTGCAGCTTTCCGAAGATATTAATCGATGGTCCATTCGGAGCTCCAGCACAAGAG
TACAAGAAATATGATGTGGTGCTACTCGTAGGGCTTGGCATTGGAGCCACACCTATGGTCAGCATTGTCAAGGACATCATCAACAACAAGAAACTTAAGGACAAGGATGGAGAGGATAAT
GGCGCACTAGAGGGCTTGGAAAGTGGCAGAGGACCACCCAATAAGAACAAGATTAGTACTAGCAGAAGTTTCAAAACAAGAAAAGCATATTTCTATTGGGTCACGAGGGAACAAGGTTCA
TTCGAGTGGTTCAAAGAGATAATGAATGAGGTGGCAGAGATGGACGACAAGCAGGTGATAGAAATGCACAACTATTGCACAAGTGTATATGAAGAAGGGGATGCAAGGTCTGCCCTCATT
GCAATGCTCCAGTCATTAAACCATGCCAAGAATGGCGTGGATGTGGTTTCAGGCACACGGGTCAAATCCCACTTTGCCAAACCCATCTGGCGACAAGTTTACAAGAAAATCGCTCTCCGA
CATCCAGATGCTCGAATTGTGGTCAGTTCACCTACCCTTGCCCACCCACTTCGTTGGGCCCTCCTTCTCCTTTTTTTTTTTTTTTTTTGTCTGTCCACGAAACTAAAAAGATCTTACAAA
CTAATCAATTCCGTGTCAACATTTACGAGCAGGAGTTTTCTACTGCGGGGCACCAGCACTTACAAAGGAGCTAAGGCAACTGGCTCTAGACTTCTCTCACAAGACCTCTACGGAGTTTGA
TTTTCATAAAGAAAACTTTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATCAGAAGCGAGGGCTTGAGGGGAGCTTATTCTGAGGACAGTTCGGACACAGAAAGCACAGCAAGTGACAGAACAGCTTTTAGTGGGCCTTTAGGTTCAGGAGGAGGAGGACTTCTC
AATAAAAAGCATTCTTCCAAGAAGAGCGCGGGGTTCAATATTCCTCCTGAAACCACCATAAATTCCGGCTTCACTGACGATTCATCTTCCTTTGTAGAGATTACTTTGGATATTTGTGAC
GATTCTGTGGCGGTTCACAGCGTTCAGGGTGCTAATGAGGATCCCGAATTGACTTTGCTGGCGAAGACAGCGCTAGAGGGAAACAATTCCTCTTCGCTGCGGTCTTCCTTGTTTAGGAAC
ACATCGTCCAAAATCAGGCAGGTCTCTCAGGAGCTAAAACGTTTCGCTTCAAGAAGGTCATCCACAGCTAGACGGTTTGATAGGACTAAGTCAGCTGCTGCTCATGCCTTGAAGGGACTT
AAGTTCATTACTGCTAAAACTGGAAATGGATGGCCTGCTGTTGAGAAGCGATTTCAAGAACTTACTGCCTCTACCGATGGCCTCCTTCCATGTTCCTTGTTTGGCGAATGCATAGGTATG
AACAAGGACTCTAAGGAATTTGCGAATGAATTATTTCGTGCACTTGCTCGGAGACATAACACAAATGGTGATTCAATTAACAAGGCACAGCTTAGACAGTTCTGGGATCAGATTGCTGAT
GAAAGCTTTGACTCTAGGCTCCAAACATTCTTTGACATGGTTGATAAAGATGCTGATGGAAGAATAACAGAAGAAGAAGTTTTGGAGATTATCAGTCTAAGTGCTTCTGCAAACAAGCTC
TCCAACATTCAGAAACAAGCCAAGGAGTATGCTGCACTGATTATGGAAGAATTAGACCCAGATAATGCTGGATACATCATGATTTATAACTTGGAAACATTACTATTGCAAGCTTCAACC
CAATCCTTCAGAGTTAGCGATAGCCGAGTTCTGAGTGAATTACTTAGCCAAAAGCTGAAGCCTACACAAGAGAACAATCCATTAAAGAGATGGTACCCAAAAGTCAAGTACTTTTTGATG
GATAACTGGCAGAGAGTTTGGATAATGATGTTGTGGATGGGTATCGTTGCCGGTTTATTTACTTACAAGTTCATAGAGTATCGACACAATAAGGCCGCATACGATGTAATGGGCTATTGC
GTTTGTGTTGCCAAAGGAGGGGCAGAGACCCTTAAATTCAATATGGCCTTGATTTTACTACCAGTCTGCCGGAACACCATTACTTGGCTGCGAAACAAGACCAAATTGGGAGTAGCTGTG
CCTTTTGATGACAATCTAAATTTCCACAAGGTTATTGCAGTAGGAATTGCCATTGGAACTGGATTACATGCAGGGGCTCATATAACGTGTGATTTTCCCCGACTTCTTCACGCCACTGAA
AAAGAATACGAGCCTCTGAAACCTTACTTTGGAGATGAGCAACCTGATAACTACGGGTGGTTTTTGAAAGGTGTGGAGGGGATCACAGGCATTATAATGGTAGTGCTAATGGCCATAGCA
TTCACATTAGCCACGCCATGGTTCCGGCGTAACAGGCTCAACCTGCCTAAACCTCTCAAGAAACTCACTGGCTTCAATGCCTTCTGGTATTCCCACCATCTGTTCGTTATTGTCTACACT
CTCCTCGTGGTCCATGGAATTTACCTCTACCTCACAAAGACATGGTATAAGAAAACGACATGGATCTACCTAGCAGTGCCGGTTATCCTTTATGCGTGTGAAAGGTTGATCAGGGCTTTT
AGATCAAGCACCAGAGCTGTTAAGATTCTCAAGGTTGCCGTCTATCCTGGAAACGTCCTGGCATTGCACATGTCAAAGCCCCAGGGCTTCAAATACAAAAGTGGGCAGTACATGTTTGTC
AACTGCGCTGCAGTTTCTCCATTTCAATGGCACCCATTCTCTATCACTTCTTCGCCAGGAGATGACTACCTGAGCGTGCACATTCGAACACTCGGTGATTGGACGAGGCAACTCCAAACT
GTTTTCTCTGAGGTTTGTCAGCCTCCACCTGCTGGGAAGAGTGGATTACTCAGAGCTGATATGCAAGGAGAAAACAATCCTAGCTTTCCGAAGATATTAATCGATGGTCCATTCGGAGCT
CCAGCACAAGAGTACAAGAAATATGATGTGGTGCTACTCGTAGGGCTTGGCATTGGAGCCACACCTATGGTCAGCATTGTCAAGGACATCATCAACAACAAGAAACTTAAGGACAAGGAT
GGAGAGGATAATGGCGCACTAGAGGGCTTGGAAAGTGGCAGAGGACCACCCAATAAGAACAAGATTAGTACTAGCAGAAGTTTCAAAACAAGAAAAGCATATTTCTATTGGGTCACGAGG
GAACAAGGTTCATTCGAGTGGTTCAAAGAGATAATGAATGAGGTGGCAGAGATGGACGACAAGCAGGTGATAGAAATGCACAACTATTGCACAAGTGTATATGAAGAAGGGGATGCAAGG
TCTGCCCTCATTGCAATGCTCCAGTCATTAAACCATGCCAAGAATGGCGTGGATGTGGTTTCAGGCACACGGGTCAAATCCCACTTTGCCAAACCCATCTGGCGACAAGTTTACAAGAAA
ATCGCTCTCCGACATCCAGATGCTCGAATTGGAGTTTTCTACTGCGGGGCACCAGCACTTACAAAGGAGCTAAGGCAACTGGCTCTAGACTTCTCTCACAAGACCTCTACGGAGTTTGAT
TTTCATAAAGAAAACTTTTAA

Retrieve as FASTA