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Entry information : PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Entry ID 6076
Creation 2008-01-28 (Christophe Dunand)
Last sequence changes 2008-01-28 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-11 (Christophe Dunand)
Peroxidase information: PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Name (synonym) PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh08
start..stop		 S start..stop
PtRboh05 1519 0 1..852 1..846
EgrRboh06 1190 0 6..852 3..857
EglRboh06 1187 0 6..852 3..857
EguRboh06 1185 0 6..852 3..857
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11496342..11496735 392 N° 2 11496832..11496994 161 N° 3 11497065..11497113 47 N° 4 11497226..11497339 112
N° 5 11497421..11498230 808 N° 6 11498400..11498495 94 N° 7 11498573..11498688 114 N° 8 11498770..11498872 101
N° 9 11498959..11499059 99 N° 10 11499144..11499309 164 N° 11 11499406..11499534 127 N° 12 11499641..11499769 127
N° 13 11499863..11499941 77 N° 14 11500060..11500169 108  
join(11496342..11496735,11496832..11496994,11497065..11497113,11497226..11497339 ,11497421..11498230,11498400..11498495,11498573..11498688,11498770..11498872,114 98959..11499059,11499144..11499309,11499406..11499534,11499641..11499769,1149986 3..11499941,11500060..11500169)


exon

Literature and cross-references PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
DNA ref. Phytozome 12:   Chr16 (11496342..11500169)
Cluster/Prediction ref. Genebank:   7487456
Omic ref. ePlant:   Potri.016G112200
Protein sequence: PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   852 (690)
PWM (Da):   %s   97529.64 (78127.8) Transmb domain:   %s   o299-317i384-406o430-452i480-502o512-529i671-688o
PI (pH):   %s   9.84 (8.83) Peptide Signal:   %s   cut: 23 range:23-712
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGSKTESKRWMLESIEIDRMRGVPVNDEPKATLPPKEPADAFIKR
SASNLGASLRRTTSSALRKSGVLSSKPPLPKIERTASSASRGLKSLRFLDRTMTGKEMDAWRSIERRFDQFAVHE
RLPKDKFGICIGLGDSKEFAGEIFHAIARRKNICPANGITKDELKLFWEDMTKQDLDSRLGIFFDMCDKNGDGRLSELEVRVIELSASANKLTNLKQHAAVYAALIMEELDPDHLGYIGL
WELETLLRGMVNNEDQTTKLDEKTHNLTNAMIPRRYRTPVTKFLTVSVEYIHENWRRIWVIALWLAVNFVLIFWKFKEFEKSPLFKISSYCVCLAKASAESLKFNMALILLPVCRRTLTK
LRSSFLGTFIPFDDNISFHKTIALAIVIGTLAHTLAHVLCNIPLLSSCPEGKFMLFAGPLFHYQQPTYWFFMRSIVGVTGILMILIMGFSFTLATHHFRKNVVKLPGVFHRLAGFNAFWY
AHHLLALAYLLCILHGYFLIFEKPWYAKTTWMYLIGPVLFYATERVFTKNQERFHRVDVIKAIIYTGNVLALYMGKPPGFKYESGMYLFIKCPDLSKFEWHPFSITSAPGDNNLSVHIRT
VGDWTTELKNLFAVCEPPRDTKQNQGRLKRMETKALSNSNFDQIQATFPKILIKGPFGAPAQNYKKFDILLLIGLGIGATPFISILKDLLNQIKSNAAESRDQRMGSTDKKGPERAYFYW
VTREQSSFDWFKGVMDDIADYDDNNIIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGLDVVSQSRIRTHFSRPNWRKVFTQMAETHKFSRIGVFYCGSALLVKPLRELCQEFTLNSST
RFQFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 16, 13 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAGCAAAACGGAATCAAAAAGGTGGATGCTTGAGAGCATTGAAATTGATAGGATGCGGGGTGTTCCTGTTAATGATGAACCTAAAGCCACCTTACCGCCCAAAGAACCTGCTGAT
GCATTCATCAAGAGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGTAGTGCCTTGAGGAAGAGTGGGGTTCTCTCTTCGAAACCTCCTCTCCCCAAGATAGAAAGAACA
GCATCATCAGCTTCTAGAGGACTTAAAAGCCTAAGGTTTCTTGATAGAACAATGACAGGAAAGGAAATGGATGCATGGAGATCCATCGAAAGGCGTTTTGATCAATTTGCAGTTCATGAA
AGGCTCCCTAAGGACAAATTTGGAATCTGCATTGTGGTATGCTTTCGAAATCTTTCGTTGTTGACAGCATGCTTTTTCTCCTATCTTTTCAATATAAAAAACACAAATTGAACTTCATTC
CCTTTTTTGCAGGACTAGGAGATTCAAAAGAGTTTGCAGGAGAAATATTTCATGCAATTGCCAGGCGTAAGAATATATGCCCCGCAAATGGGATAACAAAAGATGAGTTGAAATTGTTTT
GGGAAGACATGACTAAACAAGATCTTGATTCTCGTCTTGGAATATTTTTTGATATATGTAAGAAATCCCCCTTGTGAAGTCTAAACTGTTAAAGGGTTAACTTTAAGCTGACATAATGAT
TTAATAGGTGCGACAAGAATGGGGATGGGAGGCTTTCGGAGTTGGAAGTGAGGGAGAGGTGTGGCTATATTGCCCTTCTGCATAATTGTTATTTTCCTTTTCTTTTGTTTTTTTTTTCTT
CCTCTTCACATCACGATATTTCAATTTTCTGATTTTATGTTTTGCCAAAGGTTATAGAGTTGAGTGCCTCTGCAAACAAGCTCACAAATCTTAAACAGCATGCGGCAGTCTATGCAGCTC
TAATCATGGAAGAACTTGATCCTGATCATCTTGGATATATAGGGGGGTTGGTATTTATGCAAAAACTCTGGTTTCAAATTTTGTGACTGTGTGGCAATTAGAAACCCTACTTTTTCTAGT
TTTGCAGCTATGGGAGCTTGAAACTCTGCTAAGAGGGATGGTGAATAATGAAGATCAAACGACGAAGCTCGATGAAAAAACGCATAATCTCACAAATGCCATGATCCCAAGAAGATATAG
GACTCCTGTTACCAAATTCTTGACTGTGTCAGTAGAATATATTCATGAGAACTGGAGGAGAATATGGGTTATCGCGTTGTGGTTAGCTGTAAACTTCGTACTCATTTTTTGGAAGTTTAA
GGAGTTCGAGAAATCACCGCTATTCAAAATCTCAAGTTATTGTGTCTGTCTTGCCAAGGCTTCTGCCGAGAGTCTCAAGTTTAATATGGCCCTCATTCTTCTTCCTGTCTGCAGAAGAAC
ACTTACTAAGCTTAGATCATCATTTCTCGGCACCTTTATCCCTTTCGATGACAACATAAGCTTTCACAAGACGATTGCTTTGGCCATAGTAATTGGGACTCTAGCTCATACTCTAGCACA
TGTGCTTTGTAATATTCCGTTGTTGAGTTCATGCCCAGAAGGCAAATTCATGCTATTTGCTGGACCATTGTTCCATTACCAACAGCCAACTTATTGGTTCTTCATGCGAAGCATTGTAGG
CGTAACCGGAATTCTGATGATCCTTATAATGGGGTTCTCATTTACTTTGGCGACACACCATTTCCGAAAGAACGTCGTTAAGTTACCAGGGGTATTTCACAGATTGGCAGGGTTTAATGC
CTTTTGGTATGCGCATCATCTGCTCGCCCTAGCATATCTACTGTGCATTTTGCATGGCTACTTCTTAATATTTGAAAAGCCTTGGTATGCCAAAACGCGGTATGCACAGCCCTCAGCTAG
CTACTTCTTCATTAAGCATAACCTTTTTCTTCCATTTGTGCTTCAACAATTCTGAATGCAATATTTTCATGACAAAAAAATTTCTCTTCTGAACATATATAGGTTAAAGCGGTTGCTGAA
ACTAATTGTGTTATCTAACTTTCCACAGACATGGATGTATCTCATTGGCCCAGTATTGTTCTATGCCACTGAGAGAGTCTTCACAAAAAATCAGGAACGCTTTCACCGTGTTGATGTCAT
TAAGAGGTCTGTGTTATTGATGTTTATTGTCCTCATCCATGATATTAATTCATAAAACTCATCGTGTACTTTGGACATTACAGGCAATTATATATACAGGGAATGTTCTTGCTCTATACA
TGGGCAAGCCTCCAGGATTTAAGTACGAAAGTGGAATGTACCTCTTTATCAAATGCCCGGATTTGTCCAAGTTTGAATGTGGTAATCAATTGATCTCCGATAGTGTTTTCTGTTCCATAA
TACATCTCTTTAGTAAAAAAATTCAGTTCTTATTTCATATAGGCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATAAGAACTGTGGGTGATTGGACTAC
AGAACTCAAAAACTTATTTGCGAAGAGGTTATGGCTTGATTGGTGTCTCTCTATATCCATGCAACTGAGGCAGATTTAGTGACATGTTATTTGCAAATGTTATATTTTCGCAGGTCTGTG
AGCCCCCCCGGGATACTAAACAAAACCAAGGAAGGCTAAAGAGAATGGAAACTAAAGCATTGTCAAACTCAAACTTCGATCAGATACAAGCAACACGTCAGTAAATTAATTCTTAAATAA
TCTATACTTGAGATTTTGTGAAAACTAAAACTAAAATAGCCCCCTTTTCACCTGAGGCAGATTTCCAAAGATCCTGATCAAAGGACCATTTGGAGCCCCCGCTCAGAATTACAAAAAGTT
TGACATATTACTGCTCATAGGTCTAGGAATTGGAGCAACTCCATTTATCAGCATTTTGAAGGATCTGCTCAATCAGATCAAATCAAATGCAGCGGAGTCGAGGAGGGGGTACGTTACGTA
TAGTGCAAAGCACACATCACTGCCATAAGATTGCTTAGACAAATAAGTTGAAAATCAATTCAGCTAACATATGATTGCACGCAGGACCAACGAATGGGTTCAACTGATAAAAAGGGTCCA
GAAAGAGCATACTTTTACTGGGTCACAAGAGAACAAAGTTCTTTTGATTGGTTCAAGGGTGTCATGGACGATATTGCAGACTATGATGATAATATGTGGGTTTTGATAGCTGAAAAATGT
CCTCATTTTACAAATTCTCAGCCCGTCAAGGGTTTCTAATCTAACCAGTAATTATTCCTTTGGAACTTTTCAATGTCTCAGAATATAATTGAAATGCACAACTACTTGACTAGTGTGTAT
GAAGAAGGAGATGCAAGGTCTGCACTTATTGCCATGGTACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGTCGGGGGTATTGATCAGCTTGACTGACCACTGCA
TCATTAACGATATACTATGTTTTTTTCTTTTAAATTCCTTGCTAATATGTAATAGAATGTGACAGATAAGAACGCATTTTTCAAGACCCAACTGGAGAAAGGTATTTACTCAAATGGCAG
AAACACATAAATTTTCTCGGATAGAGGTAAGTGTGGAACTGTAAAGAACCTTTTTTGGTACCATGGCGCACCATATCTTTTTCAGCTATATCATTAGTTTTATGCTTAGGTCCTTTGTTT
ACTTCTTGATGTCTTGGTTTGCAGGCGTCTTCTACTGTGGAAGTGCTCTCCTTGTCAAACCACTGAGGGAGCTTTGCCAAGAATTTACTCTAAATTCATCAACTCGTTTCCAATTTCATA
AGGAGAACTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAGCAAAACGGAATCAAAAAGGTGGATGCTTGAGAGCATTGAAATTGATAGGATGCGGGGTGTTCCTGTTAATGATGAACCTAAAGCCACCTTACCGCCCAAAGAACCTGCTGAT
GCATTCATCAAGAGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGTAGTGCCTTGAGGAAGAGTGGGGTTCTCTCTTCGAAACCTCCTCTCCCCAAGATAGAAAGAACA
GCATCATCAGCTTCTAGAGGACTTAAAAGCCTAAGGTTTCTTGATAGAACAATGACAGGAAAGGAAATGGATGCATGGAGATCCATCGAAAGGCGTTTTGATCAATTTGCAGTTCATGAA
AGGCTCCCTAAGGACAAATTTGGAATCTGCATTGGACTAGGAGATTCAAAAGAGTTTGCAGGAGAAATATTTCATGCAATTGCCAGGCGTAAGAATATATGCCCCGCAAATGGGATAACA
AAAGATGAGTTGAAATTGTTTTGGGAAGACATGACTAAACAAGATCTTGATTCTCGTCTTGGAATATTTTTTGATATGTGCGACAAGAATGGGGATGGGAGGCTTTCGGAGTTGGAAGTG
AGGGAGGTTATAGAGTTGAGTGCCTCTGCAAACAAGCTCACAAATCTTAAACAGCATGCGGCAGTCTATGCAGCTCTAATCATGGAAGAACTTGATCCTGATCATCTTGGATATATAGGG
CTATGGGAGCTTGAAACTCTGCTAAGAGGGATGGTGAATAATGAAGATCAAACGACGAAGCTCGATGAAAAAACGCATAATCTCACAAATGCCATGATCCCAAGAAGATATAGGACTCCT
GTTACCAAATTCTTGACTGTGTCAGTAGAATATATTCATGAGAACTGGAGGAGAATATGGGTTATCGCGTTGTGGTTAGCTGTAAACTTCGTACTCATTTTTTGGAAGTTTAAGGAGTTC
GAGAAATCACCGCTATTCAAAATCTCAAGTTATTGTGTCTGTCTTGCCAAGGCTTCTGCCGAGAGTCTCAAGTTTAATATGGCCCTCATTCTTCTTCCTGTCTGCAGAAGAACACTTACT
AAGCTTAGATCATCATTTCTCGGCACCTTTATCCCTTTCGATGACAACATAAGCTTTCACAAGACGATTGCTTTGGCCATAGTAATTGGGACTCTAGCTCATACTCTAGCACATGTGCTT
TGTAATATTCCGTTGTTGAGTTCATGCCCAGAAGGCAAATTCATGCTATTTGCTGGACCATTGTTCCATTACCAACAGCCAACTTATTGGTTCTTCATGCGAAGCATTGTAGGCGTAACC
GGAATTCTGATGATCCTTATAATGGGGTTCTCATTTACTTTGGCGACACACCATTTCCGAAAGAACGTCGTTAAGTTACCAGGGGTATTTCACAGATTGGCAGGGTTTAATGCCTTTTGG
TATGCGCATCATCTGCTCGCCCTAGCATATCTACTGTGCATTTTGCATGGCTACTTCTTAATATTTGAAAAGCCTTGGTATGCCAAAACGACATGGATGTATCTCATTGGCCCAGTATTG
TTCTATGCCACTGAGAGAGTCTTCACAAAAAATCAGGAACGCTTTCACCGTGTTGATGTCATTAAGGCAATTATATATACAGGGAATGTTCTTGCTCTATACATGGGCAAGCCTCCAGGA
TTTAAGTACGAAAGTGGAATGTACCTCTTTATCAAATGCCCGGATTTGTCCAAGTTTGAATGGCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATAAGA
ACTGTGGGTGATTGGACTACAGAACTCAAAAACTTATTTGCGAAGGTCTGTGAGCCCCCCCGGGATACTAAACAAAACCAAGGAAGGCTAAAGAGAATGGAAACTAAAGCATTGTCAAAC
TCAAACTTCGATCAGATACAAGCAACATTTCCAAAGATCCTGATCAAAGGACCATTTGGAGCCCCCGCTCAGAATTACAAAAAGTTTGACATATTACTGCTCATAGGTCTAGGAATTGGA
GCAACTCCATTTATCAGCATTTTGAAGGATCTGCTCAATCAGATCAAATCAAATGCAGCGGAGTCGAGGAGGGACCAACGAATGGGTTCAACTGATAAAAAGGGTCCAGAAAGAGCATAC
TTTTACTGGGTCACAAGAGAACAAAGTTCTTTTGATTGGTTCAAGGGTGTCATGGACGATATTGCAGACTATGATGATAATAATATAATTGAAATGCACAACTACTTGACTAGTGTGTAT
GAAGAAGGAGATGCAAGGTCTGCACTTATTGCCATGGTACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGTCGGATAAGAACGCATTTTTCAAGACCCAACTGG
AGAAAGGTATTTACTCAAATGGCAGAAACACATAAATTTTCTCGGATAGGCGTCTTCTACTGTGGAAGTGCTCTCCTTGTCAAACCACTGAGGGAGCTTTGCCAAGAATTTACTCTAAAT
TCATCAACTCGTTTCCAATTTCATAAGGAGAACTTCTAA

Retrieve as FASTA