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Entry information : PtRboh09(POPTR_0006s13950 / Potri.006G137300)
Entry ID 6080
Creation 2008-01-28 (Christophe Dunand)
Last sequence changes 2008-01-28 (Catherine )
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-04-22 (Catherine )
Peroxidase information: PtRboh09(POPTR_0006s13950 / Potri.006G137300)
Name PtRboh09(POPTR_0006s13950 / Potri.006G137300)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh002]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh09
start..stop		 S start..stop
DgloRboh05 1466 0 4..926 5..927
VvRboh07 1461 0 10..926 8..917
DtriRboh04 1456 0 4..926 3..950
AgluRboh05 1444 0 3..926 27..946
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6080' 'join(11398424..11399024,11399119..11399278,11399576..11399624,11400096..11400209,11400794..11401216,11401459..11401842,11401920..11402015,11402112..11402227,11402326..11402496,11402587..11402746,11402840..11403028,11403146..11403274,11403436..11403514,11403667..11403776)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11398424..11399024 599 N° 2 11399119..11399278 158 N° 3 11399576..11399624 47 N° 4 11400096..11400209 112
N° 5 11400794..11401216 421 N° 6 11401459..11401842 382 N° 7 11401920..11402015 94 N° 8 11402112..11402227 114
N° 9 11402326..11402496 169 N° 10 11402587..11402746 158 N° 11 11402840..11403028 187 N° 12 11403146..11403274 127
N° 13 11403436..11403514 77 N° 14 11403667..11403776 108  
join(11398424..11399024,11399119..11399278,11399576..11399624,11400096..11400209 ,11400794..11401216,11401459..11401842,11401920..11402015,11402112..11402227,114 02326..11402496,11402587..11402746,11402840..11403028,11403146..11403274,1140343 6..11403514,11403667..11403776)


exon

Literature and cross-references PtRboh09(POPTR_0006s13950 / Potri.006G137300)
DNA ref. Phytozome 12:   Chr6 (11398424..11403776)
Cluster/Prediction ref. Genebank:   18100289
Omic ref. ePlant:   Potri.006G137300
Protein sequence: PtRboh09(POPTR_0006s13950 / Potri.006G137300)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   926 (240)
PWM (Da):   %s   105212.12 (26212.1) Transmb domain:   %s   o364-386i499-521o548-570i727-744o
PI (pH):   %s   9.66 (6.66) Peptide Signal:   %s   cut: 31 range:31-270
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKSTSSFGRTSSRLSNYSRTFDLPDDDLDGSETASDCEIGGAMLP
IFLNDLRRNNQDELVEVTLELEKDSIVVCSVNPNGRGMSTPSTPGGGAAAGILERSLSATSRIRRKFGWLRSRSS
RTTWSENEERVISARDARKLKAKLDRSKLSAQRGLKGLRFI
NKTTGTTSESNELWKRVESRFKLLSKDGLLAREDFGECIGMVNSKEFAVCIFDALARRKRQRITKISKEELHDFWLQISDQSFDARLQIFFDMADSNEDGRIIREEVQLIMLSASANKLSKLKEQAEEYASLIMEELDPENLGYIELWQLETLLLQRDTYMNYSRPLSTASVSWSQNISSIKPRNVMHRLSFKLRNLIL
EKWQRAWILSLWVMIMVGLFVWKFLQYKNKAAFHVMGYCLASAKGAAETLKFNMALILLPVCRNTLTWLRSTRARSFVPFDENINFHKMVAGAIVIGVILHAGNHLLCDFPRLINSSPEN
FALIASDFNNKKPTYKELVTGIEGVTGISMVVLLTIAFTLATGRFRRNGVRLPAPFNKLTGFNAFWYSHHLTGVVYILLLVHGTFLFLAHKWYQKTTWMYISAPLLLYMVERNVRTRRSE
HYSVKLLKVSVLPGNVLSLILSKPQGFKYKSGQYIFLQCPAISSFEWHPFSITSAPGDDYLSVHIRIVGDWTEELKRVFTEENDSPSVIGRAKFGQLGHMDQTRQPKLYVDGPYGAPAQD
YRNYDVLLLVGLGIGATPFISILRDLLNNTRTADNQDSNTENSRSDDSSNSYASSSMTPVSKKRTQRTTNAHFYWVTREPGSFEWFKGVMDEVAEMDHKGQIELHNYLTSVYEEGDARST
LITMVQALNHAKHGVDIVSGTRVRTHFARPNWKEVFNKIASKHPFGTVGVFYCGMPVLAKELKKLCQELSHKTTTRFEFHKEYF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 13 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATCAACTTCGTCGTTTGGGAGGACGAGCTCCAGGCTATCCAATTACAGCCGCACGTTTGACTTACCAGACGATGATCTCGACGGTTCAGAAACCGCCAGCGACTGCGAGATTGGC
GGTGCAATGTTGCCGATTTTCTTGAACGACCTGAGAAGAAACAACCAAGATGAGTTAGTTGAGGTCACGCTCGAGCTCGAGAAAGACTCCATTGTTGTTTGCAGTGTTAATCCGAACGGT
AGAGGTATGTCAACTCCGAGTACGCCTGGCGGTGGTGCTGCGGCGGGGATTTTAGAGAGGAGTTTGTCGGCAACGTCGAGGATTAGACGGAAGTTCGGGTGGTTAAGATCAAGATCTTCG
AGAACGACATGGTCGGAGAATGAAGAGAGAGTAATCTCGGCGAGAGATGCACGGAAATTGAAAGCCAAGCTTGACAGGTCAAAACTGAGCGCTCAAAGAGGACTGAAAGGGTTGAGGTTT
ATAAATAAGACAACCGGTACGACGTCTGAGTCGAATGAGCTGTGGAAACGAGTCGAGTCCAGGTTCAAGTTGCTTTCTAAAGACGGTTTGCTTGCTAGAGAAGATTTTGGTGAATGTATA
GAGGTAAATAGTTACTCAATAATAATCACTGGTTAAAAATAAATAATTTTATGTTTGTTGTTGGGTTTCTGACATGGTGTGTGAGCTATTGTGTTAGGGATGGTGAATTCGAAGGAGTTT
GCGGTGTGTATATTTGATGCACTAGCGAGGAGGAAGAGGCAGAGAATAACGAAAATAAGCAAAGAAGAGCTTCATGATTTCTGGTTACAGATTTCTGACCAGAGTTTTGACGCGCGCCTT
CAAATTTTCTTTGACATATGTGCGTCTCTCTCTCTCTCATTTTTTTCACCCTCGAATGTTTTGAAAATCATAGTAGCAATTGGGATTTGACGATCTTTAAGTTCTACGTACAAACTCAAC
GGTGGTGTTTCAGACTGTAGCATAAATCTCAGGTGGTAAGCATGCATGACCACCGTCGTCTCGATCTGCCTATATTTTTCGGGCGTTTGATCAGTACTTCTCAGACAAGTTCCAGGGCTC
TTTAATTAATCTGCTGATAGTCTGGTTTTAATTCCAATCGGAAAACGAGAAACCTGAAACTTCTGGTGCATTGCAGGGCAGATAGCAATGAAGACGGAAGGATCATAAGAGAAGAAGTGC
AGGAGAGGTAATAATATTTTCAGTAGTATAATATTATTCTCCCAAAAGATTCCTAAATAATATTACACTACTGACTGAGATGCACAATACCAACTATGATAGAGTTGCTATTCGAAGAAA
TAATTCAATTAGATTTATTATTTTCGGGTGAAAAACATTAATAATTGTTTATTCCTGAGTTGTTGTTTCGCACGCATTCACCGGTTTTAGAAAGTGGTATTATTTCTTAATTCTTTTAGC
ATTAAAATATATAGGTTTCTCACAAATTAAGCAAATTAATCGGAGACATGTTTTACAACTGTGTTAACTACCATCAATCAAATCAAAGTATTTGTCAAGAAGCATATTTACATGACAACA
CCCTACATTTCTTTTTTTTTAATTTATTATTATAAAGTAGTTAGTTATATGCACATCATGAGCAACCGATGCCAGATAATATTTTAACTGTGACATTATTACTTTCTTTTAATCCCAGCT
TATAATGCTCAGTGCTTCTGCAAATAAACTGTCAAAGTTGAAAGAACAAGCAGAAGAATATGCTTCGTTGATAATGGAAGAACTTGATCCTGAAAACCTCGGATACATTGAGAGGTAAAT
CACAAATTCAACCTTCAAATGATGATCAAGCTGATTGTTTACCTCAGTTCCAGCTTTTTGAATAGGTTAATAGTCGGTTTATTTGTGTTTTTGATATTTTTTTGTTTTAAATTAATTTTT
TTAACGTTCTTATATTGTTTTGGTATGTTAATATAAAAATAATTTTTTAAAAAAATATTATTTTAATATAATTTCAAACAAAAAATAATTTAAAAAATAACTATTAATATAATATCAAAT
AAAATTAATAAATTATTTTTAATTTAGCCTACCTTACATTCAGCCCGAGGACTCCTCGGGCCTCGTCATGAAAACCACAAATCATGTAGTGGATGCCACAAATCACTGAATTTACTATAT
TTCTTTCTTTTATTGGTTTCATGATTTATTATAAATTTATGATTCATGTACTTGTATTTAATATTCAGTAATAAAGTCACCGGAAGATTCATGACTAAAAAAAGTAACGGGAAGTTTTCT
TGACTTTTTCAGTCCTCCAACTTACAATTGGGCTTAGTCTTTTCATTTAAAAAAAAAAAAAAGATTTAAGAGAAAAAAGAGTTATTTCCCATTTTCAGTTATGGCAGTTAGAGACACTTC
TTCTACAAAGGGACACATACATGAACTACAGCAGACCATTGAGTACAGCAAGTGTAAGCTGGAGTCAGAACATAAGTTCAATCAAACCCCGGAACGTGATGCATAGGCTAAGCTTTAAAT
TGAGGAATTTAATTCTAGAGAAATGGCAAAGGGCATGGATTTTATCGCTGTGGGTGATGATAATGGTTGGCCTATTCGTCTGGAAATTCCTTCAATACAAGAACAAGGCTGCATTTCACG
TCATGGGCTATTGCTTGGCGAGTGCCAAAGGTGCTGCAGAGACTCTCAAATTCAACATGGCTCTAATTCTATTACCTGTTTGTCGAAACACACTGACTTGGCTTCGGTCCACTCGAGCAA
GGTCATTTGTTCCTTTTGATGAAAATATTAATTTCCACAAGAGGTAAGAAGGCTTACTATGCTAATTATATATAATTGACAAAGGATTTGGACAGGTTAATTAATAGATAAAAAGAAATC
AAATTCATATACGATTTGCCTTTGCTTAAGGTTCTGTTCATAATTAATGATGGAGCAACAATCCGAGATTCTACAAGCCAAACAAATGAAAGAAGTGAATATTTAATAGAAACATGCTAA
AAACATCGTCAGTCCCTGACCCCCTCTTTTACCTTATTTTCCCAGATGGTTGCAGGCGCTATAGTAATTGGAGTCATCTTGCATGCAGGAAACCATCTATTATGTGACTTTCCCCGTCTG
ATAAACTCGTCTCCTGAAAATTTTGCCTTGATTGCGTCTGATTTCAATAATAAAAAGCCTACATATAAAGAACTTGTGACTGGTATTGAAGGCGTGACTGGGATTTCTATGGTGGTGTTA
TTGACCATTGCATTCACTCTGGCAACAGGCCGCTTCCGGAGAAATGGGGTGAGACTACCTGCACCCTTCAACAAATTGACAGGTTTCAATGCGTTCTGGTACTCTCATCATCTTACTGGT
GTGGTCTATATTCTGCTGCTCGTCCATGGAACCTTCTTGTTCTTAGCCCACAAGTGGTATCAGAAAACACAGTAAGAACTTTCGAAGCTTTTGTGACAAGATAATCAATAATTAGCAAGT
AACATCTGTTATTTTTCTGATTTTCCAGACGTGGATGTATATCTCTGCTCCCTTGCTGCTCTACATGGTTGAACGAAATGTGAGAACACGTAGATCAGAACATTATTCTGTAAAATTATT
GAAGAGGTAATTAGTCAAGTTCTTGGAGGCTTTAGCGCTGCTTTCTAGATGATCTCTTGTTTTTCTTGGCAAGAAGAGTCTAACATGACCTGATTCGGATAGGTGTCAGTGCTACCGGGA
AATGTCCTCAGCTTAATCTTGTCCAAGCCACAGGGATTTAAGTACAAAAGTGGGCAGTACATTTTTCTACAATGCCCAGCAATTTCCTCCTTTGAATGTGGTAGTGTTTCTGAAAATAAC
AACTCCTGTTAATTACAATAATTATTATTATTATGAAATATGATCATGTTTCAAAGAAATGAACCTAGTCCCTTTCAGGCACCCATTCTCTATAACCTCAGCACCAGGGGATGACTATCT
CAGTGTTCACATCCGGATAGTCGGAGACTGGACGGAGGAATTGAAGCGAGTTTTCACCGAGGAAAATGATTCACCATCTGTTATTGGTCGTGCCAAATTTGGTCAACTTGGGCACATGGA
TCAAACAAGAGGTTATTTAAACACTGAGCAACTCCACTGTATTAGACTTGCATTCAAACAATTTGTGAAAATATTGAGGCAAAATGCCTGCATTGCTGCAGACAACCAAAGCTGTATGTT
GATGGTCCATATGGGGCTCCAGCACAAGACTACAGAAATTACGATGTCTTGCTTCTCGTGGGGCTTGGCATAGGAGCTACCCCTTTCATAAGCATCCTTAGAGATCTTTTGAATAATACA
CGAACAGCAGATAATCAAATGTGGTAAATGTCATTCCCTGAGATTTCATCTGTGCATATTATACTATTATAAAGTGAAGATTTACATCCAGCAATTGATTTTCTATGTTTTACTAGGATT
CAAACACTGAAAACAGTCGGTCAGATGACAGTTCAAATAGTTATGCATCTTCAAGTATGACACCAGTTAGCAAGAAGAGAACACAGAGGACTACCAATGCTCATTTCTACTGGGTTACTA
GAGAGCCTGGATCTTTTGAATGGTTTAAAGGAGTCATGGATGAAGTTGCAGAGATGGATCACAAAAAGTAAGACAAAAACTTCCAACCCATGTTTCATTATCCATGTCTCAAATAAATTG
CCACGGCTATCATTACAAAGTGATAGGTATTAACCTTCCCTCTTCTTATATAACAACAAAATAGGGTCAAATCGAACTGCACAACTACCTTACAAGCGTTTACGAAGAAGGTGATGCAAG
GTCAACTTTGATCACCATGGTCCAAGCTCTCAATCATGCGAAACATGGTGTTGACATCGTGTCAGGCACTCGAGAGTATGTTCCCTGATAAATATAAAGTTTTAGGTTGTCAAAATTACT
GTAGACAACAAGGTCAACCCGCCAATCAATAACTGGTGGGAGCTGGGAAATCAAATATTCAAAGCACCGCAGGGGTGAAGAAAACTTATTCATCATTTGGCTCTATTTTGTTGCAGGTGA
GGACACACTTTGCAAGACCAAATTGGAAAGAAGTGTTCAACAAAATTGCTTCAAAGCATCCGTTTGGCACAGTAGAGGTAAGGAAAGCATACAAATTAATAAAACACCATTTTCATGTAA
TGACCAGATTACGGTTGAAAATACAAGGCATCGATCTTCTGCAATCTTTTGGTAATAGACAAGTATTATAATTTTTTACTAAAAAACAGCTTGTTAAATTACAATGCAGGGGTGTTCTAT
TGCGGGATGCCAGTGTTGGCAAAGGAGCTGAAGAAGCTATGCCAGGAGCTGAGTCACAAGACAACCACAAGGTTTGAGTTTCACAAGGAGTATTTCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATCAACTTCGTCGTTTGGGAGGACGAGCTCCAGGCTATCCAATTACAGCCGCACGTTTGACTTACCAGACGATGATCTCGACGGTTCAGAAACCGCCAGCGACTGCGAGATTGGC
GGTGCAATGTTGCCGATTTTCTTGAACGACCTGAGAAGAAACAACCAAGATGAGTTAGTTGAGGTCACGCTCGAGCTCGAGAAAGACTCCATTGTTGTTTGCAGTGTTAATCCGAACGGT
AGAGGTATGTCAACTCCGAGTACGCCTGGCGGTGGTGCTGCGGCGGGGATTTTAGAGAGGAGTTTGTCGGCAACGTCGAGGATTAGACGGAAGTTCGGGTGGTTAAGATCAAGATCTTCG
AGAACGACATGGTCGGAGAATGAAGAGAGAGTAATCTCGGCGAGAGATGCACGGAAATTGAAAGCCAAGCTTGACAGGTCAAAACTGAGCGCTCAAAGAGGACTGAAAGGGTTGAGGTTT
ATAAATAAGACAACCGGTACGACGTCTGAGTCGAATGAGCTGTGGAAACGAGTCGAGTCCAGGTTCAAGTTGCTTTCTAAAGACGGTTTGCTTGCTAGAGAAGATTTTGGTGAATGTATA
GGGATGGTGAATTCGAAGGAGTTTGCGGTGTGTATATTTGATGCACTAGCGAGGAGGAAGAGGCAGAGAATAACGAAAATAAGCAAAGAAGAGCTTCATGATTTCTGGTTACAGATTTCT
GACCAGAGTTTTGACGCGCGCCTTCAAATTTTCTTTGACATGGCAGATAGCAATGAAGACGGAAGGATCATAAGAGAAGAAGTGCAGGAGCTTATAATGCTCAGTGCTTCTGCAAATAAA
CTGTCAAAGTTGAAAGAACAAGCAGAAGAATATGCTTCGTTGATAATGGAAGAACTTGATCCTGAAAACCTCGGATACATTGAGTTATGGCAGTTAGAGACACTTCTTCTACAAAGGGAC
ACATACATGAACTACAGCAGACCATTGAGTACAGCAAGTGTAAGCTGGAGTCAGAACATAAGTTCAATCAAACCCCGGAACGTGATGCATAGGCTAAGCTTTAAATTGAGGAATTTAATT
CTAGAGAAATGGCAAAGGGCATGGATTTTATCGCTGTGGGTGATGATAATGGTTGGCCTATTCGTCTGGAAATTCCTTCAATACAAGAACAAGGCTGCATTTCACGTCATGGGCTATTGC
TTGGCGAGTGCCAAAGGTGCTGCAGAGACTCTCAAATTCAACATGGCTCTAATTCTATTACCTGTTTGTCGAAACACACTGACTTGGCTTCGGTCCACTCGAGCAAGGTCATTTGTTCCT
TTTGATGAAAATATTAATTTCCACAAGATGGTTGCAGGCGCTATAGTAATTGGAGTCATCTTGCATGCAGGAAACCATCTATTATGTGACTTTCCCCGTCTGATAAACTCGTCTCCTGAA
AATTTTGCCTTGATTGCGTCTGATTTCAATAATAAAAAGCCTACATATAAAGAACTTGTGACTGGTATTGAAGGCGTGACTGGGATTTCTATGGTGGTGTTATTGACCATTGCATTCACT
CTGGCAACAGGCCGCTTCCGGAGAAATGGGGTGAGACTACCTGCACCCTTCAACAAATTGACAGGTTTCAATGCGTTCTGGTACTCTCATCATCTTACTGGTGTGGTCTATATTCTGCTG
CTCGTCCATGGAACCTTCTTGTTCTTAGCCCACAAGTGGTATCAGAAAACAACGTGGATGTATATCTCTGCTCCCTTGCTGCTCTACATGGTTGAACGAAATGTGAGAACACGTAGATCA
GAACATTATTCTGTAAAATTATTGAAGGTGTCAGTGCTACCGGGAAATGTCCTCAGCTTAATCTTGTCCAAGCCACAGGGATTTAAGTACAAAAGTGGGCAGTACATTTTTCTACAATGC
CCAGCAATTTCCTCCTTTGAATGGCACCCATTCTCTATAACCTCAGCACCAGGGGATGACTATCTCAGTGTTCACATCCGGATAGTCGGAGACTGGACGGAGGAATTGAAGCGAGTTTTC
ACCGAGGAAAATGATTCACCATCTGTTATTGGTCGTGCCAAATTTGGTCAACTTGGGCACATGGATCAAACAAGACAACCAAAGCTGTATGTTGATGGTCCATATGGGGCTCCAGCACAA
GACTACAGAAATTACGATGTCTTGCTTCTCGTGGGGCTTGGCATAGGAGCTACCCCTTTCATAAGCATCCTTAGAGATCTTTTGAATAATACACGAACAGCAGATAATCAAATGGATTCA
AACACTGAAAACAGTCGGTCAGATGACAGTTCAAATAGTTATGCATCTTCAAGTATGACACCAGTTAGCAAGAAGAGAACACAGAGGACTACCAATGCTCATTTCTACTGGGTTACTAGA
GAGCCTGGATCTTTTGAATGGTTTAAAGGAGTCATGGATGAAGTTGCAGAGATGGATCACAAAGGTCAAATCGAACTGCACAACTACCTTACAAGCGTTTACGAAGAAGGTGATGCAAGG
TCAACTTTGATCACCATGGTCCAAGCTCTCAATCATGCGAAACATGGTGTTGACATCGTGTCAGGCACTCGAGTGAGGACACACTTTGCAAGACCAAATTGGAAAGAAGTGTTCAACAAA
ATTGCTTCAAAGCATCCGTTTGGCACAGTAGGGGTGTTCTATTGCGGGATGCCAGTGTTGGCAAAGGAGCTGAAGAAGCTATGCCAGGAGCTGAGTCACAAGACAACCACAAGGTTTGAG
TTTCACAAGGAGTATTTCTGA

Retrieve as FASTA