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Entry information : SmKat03-1_34 (SmKat03a_34)
Entry ID 6216
Creation 2008-07-07 (Christophe Dunand)
Last sequence changes 2011-01-25 (Toky Ramarohetra (Scipio))
Sequence status complete
Reviewer Marcel Zamocky
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmKat03-1_34 (SmKat03a_34)
Name (synonym) SmKat03-1_34 (SmKat03a_34)
Class Catalase    [Orthogroup: Kat001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type strobili (cone)
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmKat03-1_34
start..stop		 S start..stop
SmKat03-2_26 1065 0 1..517 1..517
MpKat02 786 0 9..517 80..601
MpalKat02 784 0 20..517 106..604
PpaKat05 772 0 14..517 8..513
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6216' 'complement(join(939962..940235,940305..940462,940535..940747,940801..941118,941175..941493,941554..941697,941796..941923))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 941796..941923 126 N° 2 941554..941697 142 N° 3 941175..941493 317 N° 4 940801..941118 316
N° 5 940535..940747 211 N° 6 940305..940462 156 N° 7 939962..940235 272  
complement(join(939962..940235,940305..940462,940535..940747,940801..941118,9411 75..941493,941554..941697,941796..941923))


exon

Literature and cross-references SmKat03-1_34 (SmKat03a_34)
Literature Richardson,P., Lucas,S., Rokhsar,D., Wang,M. and Lindquist,E.A.
DOE Joint Genome Institute Selaginella moellendorffii EST project.
unpublished (2008)
DNA ref. Phytozome 12:   scaffold_34 (941923..939962)
mRNA ref. JGI transcript:   106736 [Incorrect splicing]
EST ref. GenBank:   FE497496.1 [5' end]  FE511042.1 [3' end]
Protein sequence: SmKat03-1_34 (SmKat03a_34)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   517 (346)
PWM (Da):   %s   58407.06 (36968.4)  
PI (pH):   %s   6.91 (4.51) Peptide Signal:   %s   cut: 18 range:18-363
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDAESGSKASNGNSKSASVRVGSSGKPLHTTLAGAPVSDDNNSVTIGQSGHLLFEDVHLFEKQARLNRERVPERVVHAKGAGAHGYFEVTKDVSNLCKAKFLSEPGKRTPVFARFSSVAAERGFTDLARDVRGFAVKFYTEEGNWDMTGNNTPVFWVRDPLK
FPDFVHSQKRNPKTNAKDPNAFWDFLSLVPESMHLLITFSPRGVPATYRNMNGYGSHTFKWVNKEGKAHWVKFHLVTEHGIKNLTHEEAVSLSGSKPDYATEDLLTSIEEGNFPAWKFCV
QVMPLEDAPKYKWDPFDLTKVWLHKDYPLMEVGRLVLDRNVENYHAEVEQAAFSPGSFVPGIEASPDRILQSRLFAYDDAARYRIGTNFHDVPINKPIVKVQTYSRDGAMVVSDNGGSKP
NYYPNSYDNLPRNDPTQPDVHPYEHEGGTVDRFPPRKWEEQDDYEQPRMLWKLMSEEDKEQTVSNIANHIRGAAEFIQERQMGLFRKCDGDLASRIEKKLAEKKKSPEPYTMIA

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns) and ESTs. Unigene compiles both allele.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGACGCCGAGAGTGGATCCAAGGCCTCGAATGGCAACAGCAAGAGCGCTAGCGTGCGAGTTGGAAGCTCGGGCAAGCCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGAT
AACAACAGGTACTGTGGTTCTTCCCAAAGCTTGGATTCGATCAAAAGCTTTGGTTTTTTTTTCTTGGATTCGATCGAAAGCTTTGTTTTTCTTTGTGTTCCTCTAGTGTGTAACTATAGG
ACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTTGAGAAGCAAGCACGGCTCAACCGTGAGAGAGTTCCCGAGCGCGTCGTCCATGCCAAAGGTGCCGGAGCTCACGGATACTT
CGAAGTTACAAAGTAAGTCTGCTACTCGGCTCGCTTGTTTCTTTTACGTTTCGGACTCCATGCCATTTGTAGGGGGACGTATCAAACTTGTGCAAGGCCAAGTTCTTGAGCGAGCCCGGA
AAGAGGACCCCCGTTTTCGCCAGGTTCTCGAGCGTGGCGGCCGAGCGTGGATTCACCGACCTTGCGCGAGATGTCCGAGGCTTCGCGGTTAAGTTTTACACCGAGGAAGGGAACTGGGAC
ATGACCGGGAATAACACGCCAGTTTTCTGGGTCCGGGACCCTCTCAAGTTTCCCGACTTTGTCCACTCGCAAAAGAGGAACCCCAAGACCAACGCCAAAGATCCAAACGCGTTCTGGGAT
TTTCTGAGCTTGGTTCCCGAGTCCATGCATCAGGTAACTTAGAACTCTTTGCGTAACTTTGATCAACTTTGTCGATTCTCCTTGTGAAGCTCTTTTGATCACATTCTCGCCTCGAGGAGT
GCCGGCTACGTATAGAAACATGAACGGATACGGCTCGCATACTTTCAAGTGGGTCAACAAGGAGGGGAAAGCTCACTGGGTGAAGTTCCATCTCGTCACGGAGCACGGCATCAAAAACTT
GACCCACGAAGAGGCCGTGAGTCTCTCGGGGTCTAAACCAGACTACGCGACCGAGGATCTCTTGACTAGCATAGAGGAAGGGAACTTCCCGGCCTGGAAGTTCTGCGTCCAAGTCATGCC
GCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGGTATGTGACACAAGTTTTCTTCTTCTTCTGTTTTTCAAGGACGTGGATTTCAGGTGTGTGGTTGCACAAGG
ATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTCGATAGAAATGTCGAAAACTATCACGCGGAAGTGGAGCAAGCGGCATTCTCTCCAGGAAGCTTTGTTCCTGGGATTGAGGCTTCCC
CGGACCGTATACTCCAGTCCCGGCTCTTTGCTTACGACGACGCTGCTCGATACAGAATTGGGACAAACTTCCACGACGTAAGAATTTATAAACGTATGTCTTTTTCCAAAGATTCTAAAT
GTGATCTGCTTGTGTCTACCACCATCCAGGTGTTCCGATCAACAAACCCATTGTGAAAGTCCAGACATATTCTCGAGATGGAGCGATGGTTGTCTCGGACAACGGCGGCAGCAAACCCAA
TTACTATCCGAACTCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCGTACGAGTAAGCAAAGCTTTTGTTTCCTATCTCCGGGAAGGAGCTTCTAACATTCCT
GTTCCTTCTTCTACGCAGGCGCATGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGAAGAACAGGACGACTACGAGCAGCCCCGTATGCTCTGGAAACTCATGTCCGAGGAA
GACAAGGAGCAAACCGTGTCAAACATCGCAAACCACATCCGCGGAGCCGCCGAGTTCATCCAAGAGCGTCAAATGGGTCTCTTCCGGAAATGCGACGGGGATCTCGCGTCCAGGATCGAG
AAGAAGCTCGCGGAGAAGAAGAAGTCGCCGGAGCCGTATACCATGATCGCCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGACGCCGAGAGTGGATCCAAGGCCTCGAATGGCAACAGCAAGAGCGCTAGCGTGCGAGTTGGAAGCTCGGGCAAGCCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGAT
AACAACAGTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTTGAGAAGCAAGCACGGCTCAACCGTGAGAGAGTTCCCGAGCGCGTCGTCCATGCCAAAGGT
GCCGGAGCTCACGGATACTTCGAAGTTACAAAGGACGTATCAAACTTGTGCAAGGCCAAGTTCTTGAGCGAGCCCGGAAAGAGGACCCCCGTTTTCGCCAGGTTCTCGAGCGTGGCGGCC
GAGCGTGGATTCACCGACCTTGCGCGAGATGTCCGAGGCTTCGCGGTTAAGTTTTACACCGAGGAAGGGAACTGGGACATGACCGGGAATAACACGCCAGTTTTCTGGGTCCGGGACCCT
CTCAAGTTTCCCGACTTTGTCCACTCGCAAAAGAGGAACCCCAAGACCAACGCCAAAGATCCAAACGCGTTCTGGGATTTTCTGAGCTTGGTTCCCGAGTCCATGCATCAGCTTTTGATC
ACATTCTCGCCTCGAGGAGTGCCGGCTACGTATAGAAACATGAACGGATACGGCTCGCATACTTTCAAGTGGGTCAACAAGGAGGGGAAAGCTCACTGGGTGAAGTTCCATCTCGTCACG
GAGCACGGCATCAAAAACTTGACCCACGAAGAGGCCGTGAGTCTCTCGGGGTCTAAACCAGACTACGCGACCGAGGATCTCTTGACTAGCATAGAGGAAGGGAACTTCCCGGCCTGGAAG
TTCTGCGTCCAAGTCATGCCGCTGGAGGACGCTCCAAAGTATAAGTGGGATCCTTTCGACTTGACAAAGGTGTGGTTGCACAAGGATTATCCCCTCATGGAAGTTGGCAGGCTCGTTCTC
GATAGAAATGTCGAAAACTATCACGCGGAAGTGGAGCAAGCGGCATTCTCTCCAGGAAGCTTTGTTCCTGGGATTGAGGCTTCCCCGGACCGTATACTCCAGTCCCGGCTCTTTGCTTAC
GACGACGCTGCTCGATACAGAATTGGGACAAACTTCCACGACGTTCCGATCAACAAACCCATTGTGAAAGTCCAGACATATTCTCGAGATGGAGCGATGGTTGTCTCGGACAACGGCGGC
AGCAAACCCAATTACTATCCGAACTCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCGTACGAGCATGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAA
TGGGAAGAACAGGACGACTACGAGCAGCCCCGTATGCTCTGGAAACTCATGTCCGAGGAAGACAAGGAGCAAACCGTGTCAAACATCGCAAACCACATCCGCGGAGCCGCCGAGTTCATC
CAAGAGCGTCAAATGGGTCTCTTCCGGAAATGCGACGGGGATCTCGCGTCCAGGATCGAGAAGAAGCTCGCGGAGAAGAAGAAGTCGCCGGAGCCGTATACCATGATCGCCTAG

Retrieve as FASTA