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Entry information : SmPrxQ-1_21 (SmPrxQa_21)
Entry ID 6219
Creation 2008-07-07 (Christophe Dunand)
Last sequence changes 2012-04-26 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-04-26 (Christophe Dunand)
Peroxidase information: SmPrxQ-1_21 (SmPrxQa_21)
Name (synonym) SmPrxQ-1_21 (SmPrxQa_21)
Class Atypical 2-Cysteine peroxiredoxin (type Q)    [Orthogroup: PrxQ001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrxQ-1_21
start..stop		 S start..stop
SmPrxQ-2_31 444 1.25e-161 1..220 1..220
PabPrxQ23 277 1.15e-95 59..220 58..219
PabPrxQ22 272 8.95e-94 63..220 63..219
GbPrxQ01 268 5.67e-92 63..220 66..222
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6219' 'join(1420112..1420327,1420444..1420581,1420631..1420720,1421247..1421465)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1420112..1420327 214 N° 2 1420444..1420581 136 N° 3 1420631..1420720 88 N° 4 1421247..1421465 217
join(1420112..1420327,1420444..1420581,1420631..1420720,1421247..1421465)


exon

Literature and cross-references SmPrxQ-1_21 (SmPrxQa_21)
Literature Richardson,P., Lucas,S., Rokhsar,D., Wang,M. and Lindquist,E.A. DOE Joint Genome Institute Selaginella moellendorffii EST project. Unpublished (2008).
DNA ref. Phytozome 12:   scaffold_21 (1420112..1421465)
mRNA ref. Phytozome 12:   148953 [Incorrect prediction]
EST ref. GenBank:   FE446757.1
Cluster/Prediction ref. UniGene:   Smo.828
Protein sequence: SmPrxQ-1_21 (SmPrxQa_21)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   220 (304)
PWM (Da):   %s   23609.23 (32698.1) Transmb domain:   %s   o362-384i505-527o569-591i
PI (pH):   %s   9.93 (4.45) Peptide Signal:   %s   cut: 19 range:19-322
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSSAAPLCGGAVLAAAAPRKSPALSSCAAILRPPCLASSSIAA
ESSLFRRVCGLGVAKSPSRRLLSTSCKLSQGDVLPSFNLKDQEGRVVNSSKFKNKPVVLYFYPADESPGCTKEACAFRDSYDKFRKAGAEVIGISADTPESHKAFAKKYRLPFTLLTDEGNKLRKDWGIPGDFFGSLPGRQTYVIDK
KGVVRLVFNNQFQPEKHAMETLKVLESM*

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 32 ESTs. Unigene compiles ESTs from both haplotypes. incorrect prediction from Phytozome (first exon is missing)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCTTCGTCAGCGGCTCCGCTCTGTGGAGGAGCAGTGCTCGCCGCCGCTGCGCCTCGCAAATCCCCGGCATTGTCCTCCTGCGCAGCGATTCTCCGGCCCCCATGCCTCGCCAGC
TCGTCAATCGCCGCGGAATCCAGCTTGTTTCGCAGGGTTTGCGGCCTGGGAGTCGCGAAATCGCCGTCCAGGAGGCTTCTTTCCACGAGCTGCAAGAGGTAAGATGCCCGCATTGCGAGG
ATTTTCCCAAAAAAATTGCGAGTGCCAATCTTGGGATGGATGGATTCCTGAGAAGATTCATAGTGTAGGGCTCTGAGCAAGGGATTACGTGCAGCTGAGCCAGGGCGATGTTCTCCCCTC
GTTCAATCTCAAGGACCAGGAGGGGCGAGTGGTGAATTCATCCAAGTTTAAGAACAAGCCCGTGGTCTTGTACTTCTATCCGGCCGATGAGTCGCCAGGATGCACCAAAGAGAGGTAGAA
AAAAAATTAAAATCCTTGCCTTGTCTAATCTCTGATCGATCAGGCTTGCGCGTTTCGGGATTCTTACGATAAATTCAGGAAGGCTGGAGCGGAAGTGATTGGCATCAGTGCCGATACTCC
AGAGTCTCACAAGAGGTACATTGCTTGATTCCCAGCTTCTTTCGTCTTCCAAGGTCTTAGAGATCTTAGAATTTGGACTGCTGGATTGGTTTTGTGTGAGAGTTTTTACGAGCTTTTCGA
AGTGGTCACTGTGTGCTCGAAAGTTTCAAGATTGGATTGTGGTATACTTGGTTTTGAGAGAGCAACTTTGCTCGAAGCTTTTAGCTTTTGTGCTCGATAGTTTGAGATCTACCAAATTGG
ATTGTGGTATACTTGGTTTTGTGTTTCCATACTTAGTGTTCACTCAAGTTTGTTGATAGTTTCTGGCCAGCCGATCGAAGCTTTTAGTTTTTGTGCTCAAAAGTTTCAGAGATCTTCCAG
TTTTGCGAGTTCCGTTGAGTCATTTGCTAAGAATTTTGTTCCCTAGAGATTGGATTGTGTTTCCAATCTTGGTGAGAGTATTTATGAGTTCTCTGATAGTTTCTGCCCAGCCGATCGAAG
TATTTAGCTTTAGTGCTCCAAAGTTTCAGAGTTCTAACGTTGGATCTTTCGCTATTCGTAGGCATTCGCGAAGAAATACCGGCTTCCATTCACGCTGCTCACCGACGAAGGAAACAAGCT
AAGAAAGGACTGGGGAATCCCCGGCGACTTCTTTGGCTCGCTGCCGGGAAGGCAAACTTACGTGATCGACAAAAAGGGTGTTGTGCGGCTCGTCTTCAACAACCAGTTCCAGCCCGAGAA
GCACGCCATGGAGACGCTCAAGGTTCTCGAAAGCATGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCTTCGTCAGCGGCTCCGCTCTGTGGAGGAGCAGTGCTCGCCGCCGCTGCGCCTCGCAAATCCCCGGCATTGTCCTCCTGCGCAGCGATTCTCCGGCCCCCATGCCTCGCCAGC
TCGTCAATCGCCGCGGAATCCAGCTTGTTTCGCAGGGTTTGCGGCCTGGGAGTCGCGAAATCGCCGTCCAGGAGGCTTCTTTCCACGAGCTGCAAGCTGAGCCAGGGCGATGTTCTCCCC
TCGTTCAATCTCAAGGACCAGGAGGGGCGAGTGGTGAATTCATCCAAGTTTAAGAACAAGCCCGTGGTCTTGTACTTCTATCCGGCCGATGAGTCGCCAGGATGCACCAAAGAGGCTTGC
GCGTTTCGGGATTCTTACGATAAATTCAGGAAGGCTGGAGCGGAAGTGATTGGCATCAGTGCCGATACTCCAGAGTCTCACAAGGCATTCGCGAAGAAATACCGGCTTCCATTCACGCTG
CTCACCGACGAAGGAAACAAGCTAAGAAAGGACTGGGGAATCCCCGGCGACTTCTTTGGCTCGCTGCCGGGAAGGCAAACTTACGTGATCGACAAAAAGGGTGTTGTGCGGCTCGTCTTC
AACAACCAGTTCCAGCCCGAGAAGCACGCCATGGAGACGCTCAAGGTTCTCGAAAGCATGTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAAAGCAAAG AAGCCCAAAA CCATGGCTTC TTCGTCAGCG GCTCCGCTCT GTGGAGGAGC AGTGCTCGCC GCCGCTGCGC CTCGCAAATC CCCGGCATTG TCCTCCTGCG CAGCGATTCT  CCGGCCCCCA TGCCTCGCCA GCTCGTCAAT CGCCGCGGAA TCCAGCTTGT TTCGCAGGGT TTGCGGCCTG GGAGTCGCGA AATCGCCGTC CAGGAGGCTT CTTTCCACGA GCTGCAAGCT  GAGCCAGGGC GATGTTCTCC CCTCGTTCAA TCTCAAGGAC CAGGAGGGGC GAGTGGTGAA TTCATCCAAG TTTAAGAACA AGCCCGTGGT CTTGTACTTC TATCCGGCCG ATGAGTCGCC  AGGATGCACC AAAGAGGCTT GCGCGTTTCG GGATTCTTAC GATAAATTCA GGAAGGCTGG AGCGGAAGTG ATTGGCATCA GTGCCGATAC TCCAGAGTCT CACAAGGCAT TCGCGAAGAA  ATACCGGCTT CCATTCACGC TGCTCACCGA CGAAGGAAAC AAGCTAAGAA AGGACTGGGG AATCCCCGGC GACTTCTTTG GCTCGCTGCC GGGAAGGCAA ACTTACGTGA TCGACAAAAA  GGGTGTTGTG CGGCTCGTCT TCAACAACCA GTTCCAGCCC GAGAAGCACG CCATGGAGAC GCTCAAGGTT CTCGAAAGCA TGTAAAGAAA AGCCGCCATT CTTTTCATCG CACCTTCCCT 
TCTATATAAA TATGTAAAAC CCGATGTTGC TGTGGACTTC TCCACGCAGA AAATCTCTTG GAATGAAAAA TTCCAAGCTT TGCCTGCTAT AATCTCTCGC AGTGGAATGC TTTAGT 

Retrieve as FASTA