Entry information : SmPrxQ-1_21 (SmPrxQa_21)
Entry ID | 6219 |
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Creation | 2008-07-07 (Christophe Dunand) |
Last sequence changes | 2012-04-26 (Christophe Dunand) |
Sequence status | complete |
Reviewer | Not yet reviewed |
Last annotation changes | 2012-04-26 (Christophe Dunand) |
Peroxidase information: SmPrxQ-1_21 (SmPrxQa_21)
Name (synonym) | SmPrxQ-1_21 (SmPrxQa_21) | ||||||||||||||||||||||||||||||||||||
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Class | Atypical 2-Cysteine peroxiredoxin (type Q) [Orthogroup: PrxQ001] | ||||||||||||||||||||||||||||||||||||
Taxonomy | Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella | ||||||||||||||||||||||||||||||||||||
Organism | Selaginella moellendorffii [TaxId: 88036 ] | ||||||||||||||||||||||||||||||||||||
Cellular localisation | N/D |
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Tissue type | N/D |
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Inducer | N/D |
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Repressor | N/D |
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Best BLASTp hits |
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Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6219' 'join(1420112..1420327,1420444..1420581,1420631..1420720,1421247..1421465)' |
Exons►
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Literature and cross-references SmPrxQ-1_21 (SmPrxQa_21)
Literature | Richardson,P., Lucas,S., Rokhsar,D., Wang,M. and Lindquist,E.A. DOE Joint Genome Institute Selaginella moellendorffii EST project. Unpublished (2008). |
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DNA ref. | Phytozome 12: scaffold_21 (1420112..1421465) |
mRNA ref. | Phytozome 12: 148953 [Incorrect prediction] |
EST ref. | GenBank: FE446757.1 |
Cluster/Prediction ref. | UniGene: Smo.828 |
Protein sequence: SmPrxQ-1_21 (SmPrxQa_21)
Sequence Properties first value : protein second value (mature protein) |
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Sequence Send to BLAST Send to Peroxiscan |
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Remarks | Complete sequence from genomic (3 introns) and 32 ESTs. Unigene compiles ESTs from both haplotypes. incorrect prediction from Phytozome (first exon is missing) | ||||||||||||
DNA ► Send to BLAST |
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CDS► Send to BLAST |
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cDNA► Send to BLAST |
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