Entry information : PpaDiOx01
Entry ID 6271
Creation 2008-07-11 (Marcel Zamocky)
Last sequence changes 2008-07-11 (Marcel Zamocky)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: PpaDiOx01
Name PpaDiOx01
Class Alpha-dioxygenase    [Orthogroup: DiOx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaDiOx01
start..stop
S start..stop
MpalDiOx02 731 0 6..634 2..603
MpDiOx02 722 0 5..634 1..603
PabDiOx01 714 0 21..634 25..636
EguDiOx01 712 0 7..634 5..629
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6271' 'join(122886..122984,123697..123966,124088..124237,124342..124472,124584..124797,124933..125078,125212..125442,125549..125751,125863..126106,126218..126464)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 122886..122984 97 N° 2 123697..123966 268 N° 3 124088..124237 148 N° 4 124342..124472 129
N° 5 124584..124797 212 N° 6 124933..125078 144 N° 7 125212..125442 229 N° 8 125549..125751 201
N° 9 125863..126106 242 N° 10 126218..126464 245  
join(122886..122984,123697..123966,124088..124237,124342..124472,124584..124797, 124933..125078,125212..125442,125549..125751,125863..126106,126218..126464)


exon

Literature and cross-references PpaDiOx01
Literature Rensing S., et al., The physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319:64-69(2008).
Protein ref. UniProtKB:   A9T3F4
DNA ref. Phytozome 12:   scaffold_159 (122886..126464)
EST ref. GenBank:   BJ942409.1 [Fragment]
Cluster/Prediction ref. UniGene:   Ppa.1843 [5' end]  Ppa.13350 [3' end]
Protein sequence: PpaDiOx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   644
PWM (Da):   %s   73003.37 Transmb domain:   %s   o264-286i
PI (pH):   %s   7.04
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGQVFGALTSWMVLPDLRPTYRQMSFVHETMFLVVHFSDRFWRWYNTPVVFGLLYLELRRTIQQNYNLIAVGNAKDRNLQVPTPSRMAVVNYIDQPGSSSHTTFDEEDYAGFFGRNMGPQ
KSE
LVNPHPSVVAAKLLSRTELKDYGKQFNMIAASWINFMIHDWVDHLEELSKEVEITAPPSVSAQCPLKNFMFYPTKEVPAGNNVTGHINTRTPWWDASVIYGSTKEAERNVRTFRDGK
LKVRPDGWLMTDEDNLPVTGDIRNLWVGVAMLQSLFIAEHNMVCDTI
KAHPDFNDEELFQHARVVTAAVLAKIHTIDWTPQLLKNNVLLAAMRANWYGLLGKRFKDTFGTTPISLLSGLV
GMKKPVDHGVPYSLTEEFTAVYRLHPLLPEKIDIKNITATASSSLHTPPTVD
EIAVPELLGNKGNDKALKLGLKTLLTSLGHQSAGALQLFNYPQWMREVTSQNRDGTDRPDKVDMASLI
YRDRERSVARYNQFRRNLVMPTIGKWEDLTEDKQTLAILRELYGNNVESLDLLVGLLVEKKPPGFAISETAFVIFVLMAS
RRLEADPLFTSHFNEKVYTEEGLKWVNTTEGLKDVLRRHH
PELVGDWMTASSAFSLWNQTPEKPSWIPLYLRWGANSPAASS

Retrieve as FASTA  
Remarks Complete sequence from genomic (9 introns) and 59 ESTs (29+1+29). Ecotype="Gransden 2004".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGACAAGTTTTCGGAGCTCTGACTTCGTGGATGGTGCTCCCAGATCTTCGACCCACGTACAGACAGATGAGCTTCGTTCACGAAACCATGTTTCTCTCGTGAGCACTCACCACCTTC
GCCGATGCCCCTCGTATGTGATTGGATTGTTCACACCAAGGAATGTGTCGTTATGTTCGAAATGCCCATGTTTTGAACATCATGCTTCACGTACCATGTCTTTTAGGTATTGAGGACCGG
TCGATTGGCAGATCATAATAAGTTTCGGGATTCAAGGTTTCGAGACCGGCTCTGTAAATGTTCGACAACCAAATACTTGTATACGACGTTGAACACACTTCAAGTGTAGTAATTCTTTCA
AATCACATCCATTGCAATTTAAGATACTCCACCAGGTAGATGCCAACAAGGAAGTATACTTGCTGAATATCCGGAACCTCATCGAATTGTTGCTCTTTTTCAAGAACAGAACCGCAGAAA
AGTGACATAGAAGTTTGAAAAGGTTCTGCTCATTTTAACGGTGATTATGTCGACTGAATGGGTGTTGAACTTTCATGGGGTAGTTTCCTTGGGGCTTGACTGTGTAGGGGCTGTCATCGA
TGTTCTCGCGCTTCATTATGCATCTTCGTTCAGGATGCCTCACTTGGATAAATTCGCTACTAACAAGCTCGTGATAAATCTGCATCAAACCACAGCATGCGTTCCACATGGCCTTTGCAG
CCAAGCGATTGTAGATTACTAGTATTGTCTGCAGCCAATTCTCTGACACCAGAATCTCTGACTAAAAAACTGAACCATCTCGTCCCCCAACAGGTAGTGCACTTCTCCGACCGCTTCTGG
AGATGGTACAACACCCCTGTTGTGTTCGGTCTGTTGTACCTGGAACTTCGACGAACTATTCAGCAGAACTACAACCTCATAGCTGTCGGAAATGCGAAGGATCGCAATCTCCAGGTTCCA
ACTCCAAGTCGAATGGCGGTTGTCAATTATATTGATCAACCAGGAAGCAGTAGCCACACCACATTTGATGAGGAAGATTATGCTGGCTTCTTTGGGCGCAACATGGGGCCTCAAAAGAGC
GAG
AGGTGCACCTCTCTGACACTTATAATTGATCAATATGGTATAGCTTGCTAGGGGCGTAATAGCATTCGGTAAGTACTAGAGTTAGCAAACTGCAAACTGATCTCTGTTCGTCGTTGT
GTGCAGCTGGTCAACCCCCATCCATCTGTTGTGGCCGCGAAGTTGCTATCTAGGACGGAATTGAAAGATTACGGAAAACAATTTAACATGATAGCTGCTTCATGGATCAACTTCATGATT
CACGACTGGGTTGATCACCTAGAGGAATTGAGCAAG
AGGTGCAATTCATCATTAGTAACCATGGCTAGAAACTCATGTGCTCACTGATCAAACTTGAAACTCGAACTGAACAGAATCTAA
CAGTGCCAGTTCTGGTGCTCAGGAAGTCGAGATTACGGCTCCACCCTCTGTTTCGGCGCAGTGTCCTTTGAAGAATTTCATGTTTTACCCTACGAAGGAGGTTCCTGCAGGCAACAACGT
GACCGGTCACATCAACACTCGAACACCTTGGTG
TGGTACGGTTCCTCTGGGAGGAAGGCTTAATTTCCAAATAAAAATGCCACTAAGCTCTGCTTTCCGAAAGACAAGCTAATTGAGTAG
AATTATGTGTATGTTGTGACGAGCAGGGACGCAAGTGTAATCTACGGAAGCACTAAAGAAGCCGAGCGTAATGTTCGAACATTCCGAGACGGCAAGCTCAAGGTCCGACCAGATGGTTGG
CTAATGACCGACGAGGACAACCTCCCGGTCACTGGCGACATCCGCAACCTCTGGGTCGGAGTGGCGATGCTCCAATCTCTGTTTATTGCAGAGCACAACATGGTCTGCGATACAATCAAG
AGGTCAGTCACATATGAAGCGCAATTTCTCCTCCACACCTTGTTAGCCACGACTAGTTGAGGTTTAATGCTGCAGACTTGCTGCGCGGTGCTGGGACTTACCAACGAATTCCTCCAAACG
TCTCCCGCTTTGAACAGAAAGCGCATCCAGACTTCAATGACGAGGAGCTCTTCCAGCACGCCAGGGTTGTGACTGCTGCGGTACTCGCGAAGATCCACACTATTGACTGGACGCCGCAGC
TGCTGAAGAACAATGTCTTGCTCGCAGCAATGCGTGCCAACTG
TGGTAAGCTAATGTGCCCTCAATCATCTTTAGAAACGGAGATCACAACGTGCACATGAACATTCGAATCTTATGAAT
GTTGTCTCACGTCCATCATGTTTTACTCACTTCCTGCACGAGGCTCTGTCTGTCATAGGTATGGATTGTTGGGAAAGAGATTCAAGGATACGTTCGGCACTACTCCTATCTCGCTCTTGA
GTGGGTTGGTCGGCATGAAGAAACCAGTGGATCATGGTGTGCCCTACTCACTCACAGAGGAGTTTACAGCAGTGTACCGGTTACATCCTTTGCTGCCTGAGAAGATTGACATTAAGAACA
TTACGGCAACTGCGAGCAGTAGCCTACACACACCACCAACCGTAGACGA
GAGTAAGTCCGTTCCTTCGTGGCCAGTTTATCGAACATTTAACCCATTGACAAGAAGCTCCCAAACAAGAG
AAAGGAGTTCAATGATTTGACATTTAAACATTGGCAGGATTGCTGTGCCTGAGCTGCTTGGAAACAAGGGGAACGACAAGGCACTGAAACTTGGGTTGAAGACGCTTCTCACATCTCTAG
GACATCAATCCGCAGGAGCTTTACAATTGTTCAATTACCCTCAATGGATGCGGGAAGTGACCTCTCAGAACAGGGACGGTACTGACCGGCCGGACAAGGTGGACATGGCCAGCCTTGAGA
GAGTAAGTGTATCATTGTAAGAATATCCAGCATAATTCAGTCTGCGGTGATATAATTGTGCATAAGAATATTGCTATCAAGTGTTAAGTGCATTCGCAACGTTGCTCTTGCAGTTTATCG
AGACCGGGAGCGCTCTGTGGCTCGCTACAACCAGTTCCGAAGGAACTTGGTGATGCCCACCATTGGGAAGTGGGAAGATTTGACAGAAGACAAGCAAACGCTAGCAATTCTTCGCGAGCT
TTACGGCAACAATGTGGAGAGCCTTGATTTGCTAGTAGGGCTGCTGGTGGAGAAGAAACCCCCAGGGTTTGCCATCAGCGAGACTGCCTTCGTCATTTTTGTTCTCATGGCCTCCAG
AGG
TGACGGTGTACACGACGCTCAAATTTTATTTCATGAGTCCATAGAAGTGATGCTGACCCATATTAACCTACTGGTTCCAATCGCTGGCCAATTTGTGTTTCTCTGTGCAGGCGTTTGGAA
GCGGATCCGCTTTTTACTTCACACTTCAACGAAAAAGTGTATACCGAGGAGGGATTGAAGTGGGTGAACACCACGGAGGGCCTCAAGGATGTGCTGCGTCGCCACCATCCCGAGCTGGTG
GGAGACTGGATGACGGCATCTTCGGCATTCTCGCTATGGAATCAGACACCAGAGAAGCCGAGTTGGATCCCTTTGTACCTCCGCTGGGGCGCGAACTCCCCTGCAGCGAGCTCCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGACAAGTTTTCGGAGCTCTGACTTCGTGGATGGTGCTCCCAGATCTTCGACCCACGTACAGACAGATGAGCTTCGTTCACGAAACCATGTTTCTCGTAGTGCACTTCTCCGACCGC
TTCTGGAGATGGTACAACACCCCTGTTGTGTTCGGTCTGTTGTACCTGGAACTTCGACGAACTATTCAGCAGAACTACAACCTCATAGCTGTCGGAAATGCGAAGGATCGCAATCTCCAG
GTTCCAACTCCAAGTCGAATGGCGGTTGTCAATTATATTGATCAACCAGGAAGCAGTAGCCACACCACATTTGATGAGGAAGATTATGCTGGCTTCTTTGGGCGCAACATGGGGCCTCAA
AAGAGCGAG
CTGGTCAACCCCCATCCATCTGTTGTGGCCGCGAAGTTGCTATCTAGGACGGAATTGAAAGATTACGGAAAACAATTTAACATGATAGCTGCTTCATGGATCAACTTCATG
ATTCACGACTGGGTTGATCACCTAGAGGAATTGAGCAAG
GAAGTCGAGATTACGGCTCCACCCTCTGTTTCGGCGCAGTGTCCTTTGAAGAATTTCATGTTTTACCCTACGAAGGAGGTT
CCTGCAGGCAACAACGTGACCGGTCACATCAACACTCGAACACCTTGGTG
GGACGCAAGTGTAATCTACGGAAGCACTAAAGAAGCCGAGCGTAATGTTCGAACATTCCGAGACGGCAAG
CTCAAGGTCCGACCAGATGGTTGGCTAATGACCGACGAGGACAACCTCCCGGTCACTGGCGACATCCGCAACCTCTGGGTCGGAGTGGCGATGCTCCAATCTCTGTTTATTGCAGAGCAC
AACATGGTCTGCGATACAATCAAG
AAAGCGCATCCAGACTTCAATGACGAGGAGCTCTTCCAGCACGCCAGGGTTGTGACTGCTGCGGTACTCGCGAAGATCCACACTATTGACTGGACG
CCGCAGCTGCTGAAGAACAATGTCTTGCTCGCAGCAATGCGTGCCAACTG
GTATGGATTGTTGGGAAAGAGATTCAAGGATACGTTCGGCACTACTCCTATCTCGCTCTTGAGTGGGTTG
GTCGGCATGAAGAAACCAGTGGATCATGGTGTGCCCTACTCACTCACAGAGGAGTTTACAGCAGTGTACCGGTTACATCCTTTGCTGCCTGAGAAGATTGACATTAAGAACATTACGGCA
ACTGCGAGCAGTAGCCTACACACACCACCAACCGTAGACGA
GATTGCTGTGCCTGAGCTGCTTGGAAACAAGGGGAACGACAAGGCACTGAAACTTGGGTTGAAGACGCTTCTCACATCT
CTAGGACATCAATCCGCAGGAGCTTTACAATTGTTCAATTACCCTCAATGGATGCGGGAAGTGACCTCTCAGAACAGGGACGGTACTGACCGGCCGGACAAGGTGGACATGGCCAGCCTT
GAGA
TTTATCGAGACCGGGAGCGCTCTGTGGCTCGCTACAACCAGTTCCGAAGGAACTTGGTGATGCCCACCATTGGGAAGTGGGAAGATTTGACAGAAGACAAGCAAACGCTAGCAATT
CTTCGCGAGCTTTACGGCAACAATGTGGAGAGCCTTGATTTGCTAGTAGGGCTGCTGGTGGAGAAGAAACCCCCAGGGTTTGCCATCAGCGAGACTGCCTTCGTCATTTTTGTTCTCATG
GCCTCCAG
GCGTTTGGAAGCGGATCCGCTTTTTACTTCACACTTCAACGAAAAAGTGTATACCGAGGAGGGATTGAAGTGGGTGAACACCACGGAGGGCCTCAAGGATGTGCTGCGTCGC
CACCATCCCGAGCTGGTGGGAGACTGGATGACGGCATCTTCGGCATTCTCGCTATGGAATCAGACACCAGAGAAGCCGAGTTGGATCCCTTTGTACCTCCGCTGGGGCGCGAACTCCCCT
GCAGCGAGCTCCTGA

Retrieve as FASTA