View Redoxidase 6324

Entry information : PpaPrxQ01

Entry ID	6324
Creation	2008-08-08 (Christophe Dunand)
Last sequence changes	2011-02-02 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-02-02 (Christophe Dunand)

Peroxidase information: PpaPrxQ01

Name

PpaPrxQ01

Class

Atypical 2-Cysteine peroxiredoxin (type Q) [Orthogroup: PrxQ001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella

Organism

Physcomitrella patens [TaxId: 3218 ]

Cellular localisation

N/D

Tissue type

Protonema

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PpaPrxQ01 start..stop	S start..stop
PpaPrxQ02	299	2.34e-104	1..218	1..218
MpalPrxQ	257	1e-87	11..218	18..214
MpPrxQ01	254	6.72e-87	5..218	2..214
WmPrxQ	254	1.15e-86	6..218	11..223

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	290647..290862	214	N° 2	289753..289980	226	N° 3	289423..289638	214
complement(join(289423..289638,289753..289980,290647..290862))

Literature and cross-references PpaPrxQ01

Literature	REFERENCE 1 Rensing,S.A. et al., The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319 (5859), 64-69 (2008). REFERENCE 2 Fujita,T., Nishiyama,T., Shin-i,T., Kohara,Y. and Hasebe,M. Physcomitrella patens EST at a stage of the first asymmetric cell division of protoplasts.
DNA ref.	Phytozome 12: scaffold_95 (290862..289423)
Cluster/Prediction ref.	UniGene: Ppa.7395

Protein sequence: PpaPrxQ01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	219
PWM (Da):	23560.13	Transmb domain:	i13-35o50-72i101-123o138-160i173-195o
PI (pH):	9.61

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MATSASCSLAIAAAGAANTSQPTRNHGTARPVASATFVNSELFSSKAGLSARVAGASFHVKSRHTSPLTICKISKGDIVPPVGLKDEEGKLVNLDKFRGKPLVLYFYPADESPACTRQAC
SFRDSYEKFKKAGAEVVGVSGDTPESHKAFKAKYRLPFTLLSDDGNKLRKDWGVPSDLFGALAGRQTYVIDKDGKVQFIFNNQFEPEKHIAETLNFLKG*

Retrieve as FASTA

Remarks

Complete sequence from genomic (2 intron) and 21 ESTs. Ecotype="Gransden 2004".

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGACTTCAGCTTCCTGCTCATTGGCAATCGCTGCCGCTGGCGCTGCAAACACCTCCCAACCAACTCGCAACCATGGCACCGCTAGACCTGTCGCTAGTGCTACTTTCGTGAACTCC
GAGCTCTTTTCTTCCAAGGCTGGTTTAAGCGCACGCGTGGCTGGAGCCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAGGTATGTATTGTCCTTCTCAATCAG
CAGGGTCACACTTTGGATAATCGTCTATGTAGTCGGGATACTTACGGTAAAATGATGTATAGGCATAGTTTCTCGACTCAGCCACATCTTCTTAGACCACGTTGCACGCATCGCTGGTGC
AGTAGTGCGCGTTGCAAATAAATAGACGACAGCCAGCTTTCAGTGGATTTTTGAGTTTCTAATTGGCGGATGTAGCTGTTCCTCCGTCGGTGATTGCAATTAGCTAATGCAGCCGCTCTC
ATGCAGGTTGTTGCCTCTACCCATTAGTGGAAAGGTTTCTCGTCCCATTTCTTTCCTTCGTGACAGGCGACGCCTACACTCCTGGCTCTGGTCGAAATTCACATTGTCTTCTACGCACCG
TCGATGCTCTTGAACTACATTTTCCAAAAATTATAGCATCTTGTTGTGTTGGTTACGGATGTTCTGTCAGGATGTAGCAACGGGATTTGAGTAACAGTGTGATACTTTTATCTCTCCGCT
TGAGTTTGAGGATTTCAGCTTCAACGTTCACTAGTTAAGAAATCCTTTCCCGAAAAATATTGACGCTGGATGGCGTCATAGCAACTTGTGATGTCCTGTCTTTTCCATGAAGCTGTGCAA
ATAGGGTTATTCTCAGTGAAACTGAATTAATGTCCAATGCAGATATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGCAAATTGGTGAATCTAGACAAGTTCA
GGGGCAAGCCCCTGGTGCTGTACTTCTACCCTGCCGATGAGAGTCCCGCCTGCACCAGGCAGGCATGTTCATTTCGCGACTCGTACGAAAAGTTCAAGAAGGCAGGTGCTGAGGTTGTTG
GAGTGAGTGGTGACACTCCCGAATCCCACAAGGTCAGTCTACTTCGTTACCATCTTAAGATCTATATTCGCTTAATATGAACGGTGTCGCCAGGATGAGGTAATATTACCTTTGTTGATG
GAATTCATGTTTAACATGGTGTGCAGGCGCATTTAAAGCAAAATATAGACTTCCATTCACTTTGCTCAGTGACGACGGCAACAAGCTGCGCAAGGACTGGGGTGTGCCAAGTGACCTCTT
CGGAGCCCTAGCTGGTCGTCAGACTTACGTCATTGATAAGGACGGCAAAGTGCAATTTATCTTCAACAATCAGTTTGAGCCAGAAAAGCACATTGCTGAGACTTTGAATTTCCTGAAAGG
TTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA