View Redoxidase 6395

Entry information : Ppa2CysPrx01

Entry ID	6395
Creation	2008-10-30 (Christophe Dunand)
Last sequence changes	2011-02-02 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-02-02 (Christophe Dunand)

Peroxidase information: Ppa2CysPrx01

Name

Ppa2CysPrx01

Class

Typical 2-Cysteine peroxiredoxin [Orthogroup: 2CysPrx001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella

Organism

Physcomitrella patens [TaxId: 3218 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	Ppa2CysPrx01 start..stop	S start..stop
Ppa2CysPrx02	431	1.69e-154	36..282	36..282
Mpal2CysPrx01	411	1.29e-146	1..282	1..275
Mp2CysPrx01	402	4.17e-143	38..282	34..275
Gb2CysPrx	393	1.49e-139	1..282	1..279

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2368256..2368501	244	N° 2	2368812..2368895	82	N° 3	2369312..2369393	80	N° 4	2369648..2369727	78
N° 5	2369946..2370071	124	N° 6	2370306..2370419	112	N° 7	2370772..2370888	115
join(2368256..2368501,2368812..2368895,2369312..2369393,2369648..2369727,2369946 ..2370071,2370306..2370419,2370772..2370888)

Literature and cross-references Ppa2CysPrx01

Literature	Hasebe,M., Nishiyama,T., Suzuki,Y., Sugano,S., Hiwatashi,Y., Kohara ,Y. and Shin-i,T. Expressed genes in Physcomitrella patens. Unpublished (2008).
DNA ref.	Phytozome 12: scaffold_30 (2368256..2370888)
EST ref.	GenBank: DC936445 [5' end] DC957738 [3' end]
Cluster/Prediction ref.	UniGene: Ppa.5529

Protein sequence: Ppa2CysPrx01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	282
PWM (Da):	30066.48	Transmb domain:	o269-287i347-369o406-428i449-471o481-500i642-659o679-698i
PI (pH):	7.5

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MACAAAASGVTLPAGNIAHARPAAFSSSASGASSSLSVRKSFSGLSKSFAARLAATNAPTGKAASAAGVKIASQKRGVITASAQDSYEPLIGNVAPDFEAEAVFDQEFIKVKLSEYIGKK
YVVLFFYPLDFTFVCPTEITAFSDRYSEFEKLSTEVIGVSTDSFSHLAWIQTDRKAGGLGDLHYPIVSDITKKISRSFNVLIPEQGIALRGLFIIDKQGVIQHATVNNLGIGRSVDETLR
TLQAVQYVQDNPDEVCPAGWKPGEKTMKPDSKLSKEYFEAI*

Retrieve as FASTA

Remarks

Complete sequence from genomic (6 introns) and 18 ESTs (unigene) and 28 not compiled. Strain="Gransden"

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGTGTGCTGCAGCAGCCTCCGGCGTCACGCTCCCCGCGGGCAACATCGCCCATGCTCGCCCTGCGGCCTTTTCGTCCTCTGCCTCCGGCGCATCCTCCTCTTTGTCCGTGCGGAAG
TCGTTCTCCGGACTGAGCAAAAGCTTTGCTGCTCGCCTGGCTGCTACCAATGCACCCACTGGCAAGGCTGCTTCGGCAGCTGGAGTCAAGATCGCGTCGCAGAAGCGGGGTGTGATCACT
GCTTCGCGGTGAGTGAGATGAGCGAAATTAAGGAGATGGAATGAATAGCGTTAGGCGTTAGGTCAAACTCCTGACAGCAACTTCTTAGCCCAAAATGTGGGTGACTCTTTCGTTGTGGGT
GTTGATGTGTCCTATGGCGATTACTATCCGGGGCTCAGGGTCTACGGATTAATAGATGCTACGTGATGCATGTCGTGAATTCTCCGCCCTTCCGTGTCGCGATTATGTGGATGGTTGCTG
GAGATCATCGAAGGGTGGGCGGAATAGGGGAGGAGCGTTGTGTGGAGGTAATAACTGGTTTGTGGAGTGTCCATGCAGGCGCAGGACAGCTACGAGCCACTCATTGGTAATGTTGCCCCA
GACTTCGAGGCGGAGGCTGTGTTCGACCAGGAATTTATTAAGAGGCATGTTTCAACCGTTCAGTTTTCCGATCACGGTTCTGGTTGTTGCCGAGTCTCGTGCCTCCCATATGTGCGATTC
TGTATTCTATTAGAGTATGAAATAGCCATTTCAAGTACTATCCCATTCCTCCAATTTTGTTTTTTACAGTGTCTGTCTCATGGGGCATCTGAGTGAATTTCTGGTCATGTGCGGCTTCGG
GAGCAACCTTGCTTGTGCAAAGTTTACATTCTATGCCTTCCTAGTTCACACAGCAACTAGTTTCAGCTCGGGGAGCGATTTCGCTTGTACAAGGTATTAGTCATGTCATGTTGTATGTGG
CATGGGAGATCGTGGGAGTAGCTAATTCGGGGAGGTATGTATACAATCATCAATATTACGTTTGTGGATGGACTGACCGATCGGTTTTGCCTACATGCAGGTTAAGCTGTCCGAGTACAT
TGGAAAGAAGTACGTCGTATTGTTCTTCTACCCTTTGGACTTCACATTCGTATGTCCAACAGAGGTACTCATCGGGTTTTGGATGCCCTTCCTGTCCTGTTCTGTTCAGAGGAGGGGTTA
GTCTTCTTTGCATTAGTGGGGAACATTGGGCAGAGGTGAGCAAGGGGCTGTACAGGGGAGTAGTTTTCCAGTGTTTTTATTTATAGCTCCAACTTTCAAGTCATTGAGATAATTGCGTTT
TCGACGGTAGTGACACACTTCCGGTGTGAATGCTAAGTGATTTGTGAGCTAGATTTAGGCCATAACGTGAGCTTGCAGAAATCACTGCCTTCAGTGACAGGTACAGCGAATTCGAGAAGC
TAAGCACGGAAGTTATCGGTGTTTCCACTGACAGCGTGTGGTATGAATTCATCCTATTTCATCTCAATTGTGTGTCGTGATGTGATGTAGCGGGGGTGAGGGGAACGGTGAGGTGCATGG
ATGTTGAGGCGAGATGTGGATCAGAATTGTTTGGATGCGGCTTGTCCTCTGAGATAAGGAATGGACGTAGTGCAGTTTTTGGCTGGTTCCCAGTTGGAGCAGACCCAACTAAGCATGTGA
CCTTGGCAATGGCTGCAGTTCTCTCACCTCGCCTGGATCCAAACTGATAGAAAGGCAGGAGGGCTCGGGGACCTGCATTATCCCATCGTCTCGGACATTACCAAAAAGATTTCTAGGTCA
TTTAATGTACTGATTCCGGAGCAGAGGTATTAAAGAGAGTAATAATGGCTTGTTGACTTTGAAGTTTGTTTGCAGTGGAAAATGTTCGTTTTTTTTATTATGTCTTTATTTACTTTGATC
AAAACAGTATATTATAATACTATTCTATTTGGGTTTTTTTTTGTTTGAAGGGGAGAGAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTGGGTGTTCCCCGACTGA
GTTGGGATTTATTTTGGCAGGGCATCGCACTGAGGGGTCTATTCATCATTGACAAACAGGGAGTGATCCAGCACGCAACCGTCAACAACCTTGGTATTGGGCGAAGCGTTGACGAAACTC
TGCGGACTCTGCAGAGGTAGGTGGAAAGGGTAGTCTACTTTGGAACATGCTGAGACTGGGTTTAGAAGCAATTCCCAGTTAGCCTAATGGCACGAGTGGTTTCGGAGTGGAGCTGTTCGT
CGCTCAGCGTCTTCCCATCCTGTAGTTGACAACCTTTAGGAACACCTATAGCATTCCTGAGATTTCGTATGGTACAATCGTCCTTAGATGGAGGGTCCATCTAAGAGCCTCATATCGTAT
ACAATGAACGTGTAAAGCATTTTGGTGAGGCCGACATAGGATGTTTATCTCGATATTGCAATTGGTACTGGTAGGGCTAATTTTTCTGTTTGTGAGCGTGTGGCTGAAGCTGCTATTTTT
GTTCTCAGGCCGTACAGTACGTGCAAGATAACCCAGACGAGGTGTGCCCTGCTGGCTGGAAGCCTGGGGAAAAAACGATGAAGCCTGACTCGAAGCTAAGCAAGGAGTATTTCGAGGCCA
TCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA