Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
375 (350) |
| PWM (Da): |
39610.99 (36849.4) |
Transmb domain: |
o321-340i377-399o419-441i601-618o |
| PI (pH): |
5.18 (4.99) |
Peptide Signal: |
cut: 26 range:26-375 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MRMMLPKQLL TIGILLLAVG AVVEGADNWR WRRSPPPPPP PSPPPPPPPS PPPPSASPPP PPPSPPPPPP SSGADPVDFY SSQCPGARNA VGSVISSAIA ADKGLPAALL RLQFHDCFVR
GCDASILLQS NETHVAEKDG VGNAFSVRGY EVIDDAKTAV ESLCPGVVSC ADIIALSARD AIAAIGGPSW RVVSGRRDGL VSNAVETPSN LPPPFADYAF LVQIFARKGF TEKEMVVLSG
SHTIGITHCG LLEGRLYNGT GPNGVDPTLD STYAAQLKQQ CPFGADMVEV QMDPTNGGNT FDSMYYTRLM EKKGLFISDD NLIRTASGLA LVQAQAADSR VPFISDFGAA MEKMIVLETL
TAPNGQIRKD CKFIN*
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Retrieve as FASTA
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| Remarks |
Complete sequence from genomic and 1 EST (Frame:1[205-730] on contig. Strain="E". Short 5' end.). Incorrect preediction of the 5'end from Phytozome => confirmed with EST and M.paleacea. |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGTGGCAA TGATCGTGCA CTCTTTGTTC CACACTGCAC ACAACATTCC CAGGTTTAAA ATTGCGAAGT TTTGCTGGTC AGCTAGCTAT CTGACGTCAG GATTACGTAC GAATTGTGCT
TCCAGGATTC CTCGACAACT TGAGGTCCGA CTTGGAGTGC TGCAAGAGTT CACTTATCAA TGAGGATGAT GCTTCCGAAG CAGTTGTTGA CAATTGGCAT TTTGCTCTTG GCCGTCGGTG
CTGTGGTCGA GGGTGCGGAC AATTGGAGAT GGAGAAGGTC GCCTCCCCCT CCTCCCCCCC GTTCCTCCTC CTCCTCCCCG TTCTCCTCCT CCTCCCCGTT CTCCTCCCCC TAGAGCATCT
CCTCCTCCTC CTCCTCCACC ATCACCACCA CCACCGTCTG CCTCTCCACC GCCACCGCCA CCATCACCAC CTCCTCCCCC ACCGTCGAGT GGTGCTGATC CGGTTGACTT CTATTCAAGT
CAGTGTCCTG GTGCAAGAAA TGCAGTCGGC TCGGTCATTT CTTCTGCCAT AGCCGCAGAC AAAGGTCTTC CCGCTGCACT TCTCAGACTG CAGTTCCATG ACTGCTTTGT CAGGGTGAGC
GTGCTGCTTT CAGCCCATTC TTATCCCGGA ATGGAAAGTT TCAGAGCTGC TCAATATAGG ATTTCCTTTT AATGTACAAT ATGGCTCACA CTTCATAAAC TCATTACGTC TGAAGTTCCA
TCTTGGCTTC TTCCTCGAGC TCAGGTCTTC CAGAATAGGC TTGAAACTCA AATTAATCGA ACATCTGACA GTGACTACGA AGTGGACTAG CTTGTTATTA TGGCGAAGGC TCGTGCGTGC
AGGAAAAGGG GAGGATCCCA CACCAGCAGC AGTGAGCTGA AATAACTCCC TTACTCGGTG CAAACTTATC CCTCTGGAAC TGGACTCATG GTCGGTCATC GAGACTTCCT ACTGCGCGGA
ACAAAATCGC AAACTACCAG GAGCCTTTTA TAGAATCCAG GTGTCGAAGA ACGATTACGC TGAGTTCGTA AACCACAATT TTTCAAAAGT TTGAGTAGGA ATCGGGTGGT ATTCTGCAGG
TGACAATATT GCCCAGTATC TGTTTGTCCG CTGCGAGACT GAGGCTGTGA TTATCATCTT TCCTGTAGGG TTGCGATGCC TCTATTCTTC TCCAGTCCAA CGAGACTCAC GTCGCCGAGA
AGGACGGCGT TGGTAATGCA TTTTCTGTCA GAGGTTACGA AGTGATCGAT GACGCGAAGA CAGCAGTAGA GAGCCTCTGC CCTGGAGTTG TTTCTTGTGC GGACATCATT GCACTCTCTG
CTCGGGATGC CATAGCTGCC GTAAGTATCA GATCTCTTTG TATACAAGTT CGCTCCAAGA GTTGTGTAAT CTTAGCCGAC AAGCATGCAG TAACCGGTTT CAAAGCATTA CCAGATTCAC
AACGTAGGAG GAACCAATAT TGTTGACCCG AATGGAGTAT ACTTGATTTC AGATCGGAGG TCCCTCCTGG AGAGTCGTAT CTGGCCGCCG AGATGGACTC GTTTCAAACG CCGTGGAGAC
CCCAAGCAAC TTGCCCCCTC CCTTCGCCGA CTATGCTTTC CTTGTGCAAA TCTTCGCCAG AAAAGGATTC ACTGAGAAAG AGATGGTAGT TCTTTCAGGT AACTGACTGA CTACTTATCA
TTGTATTCTT CACATTCTTC CATCTGGCCG ATCGGAACTT CTGAAGCTCA GAGTTCTAAC TAAAGTCTGC TGCAGGTTCT CACACAATCG GTATCACTCA TTGCGGGTTG CTTGAGGGCC
GTCTGTACAA TGGCACTGGA CCCAATGGAG TCGATCCTAC TCTTGATTCG ACTTACGCTG CTCAGCTGAA GCAGCAGTGC CCGTTTGGAG CAGACATGGT GGAGGTCCAG ATGGACCCTA
CCAACGGCGG AAACACTTTC GACAGTATGT ACTACACTAG ACTCATGGAG AAGAAAGGAC TGTTTATATC TGACGACAAT TTAATTCGAA CTGCCAGTGG CTTGGCCTTG GTACAAGCTC
AGGCTGCCGA CAGCCGTGTT CCATTCATTT CAGATTTCGG AGCTGCAATG GAGAAGATGA TAGTTCTCGA AACTCTCACA GCTCCAAATG GACAGATTAG GAAAGACTGC AAATTCATTA
ACTAG
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGAGGATGA TGCTTCCGAA GCAGTTGTTG ACAATTGGCA TTTTGCTCTT GGCCGTCGGT GCTGTGGTCG AGGGTGCGGA CAATTGGAGA TGGAGAAGGT CGCCTCCCCC TCCTCCCCCC
CCATCTCCTC CTCCTCCTCC TCCACCATCA CCACCACCAC CGTCTGCCTC TCCACCGCCA CCGCCACCAT CACCACCTCC TCCCCCACCG TCGAGTGGTG CTGATCCGGT TGACTTCTAT
TCAAGTCAGT GTCCTGGTGC AAGAAATGCA GTCGGCTCGG TCATTTCTTC TGCCATAGCC GCAGACAAAG GTCTTCCCGC TGCACTTCTC AGACTGCAGT TCCATGACTG CTTTGTCAGG
GGTTGCGATG CCTCTATTCT TCTCCAGTCC AACGAGACTC ACGTCGCCGA GAAGGACGGC GTTGGTAATG CATTTTCTGT CAGAGGTTAC GAAGTGATCG ATGACGCGAA GACAGCAGTA
GAGAGCCTCT GCCCTGGAGT TGTTTCTTGT GCGGACATCA TTGCACTCTC TGCTCGGGAT GCCATAGCTG CCATCGGAGG TCCCTCCTGG AGAGTCGTAT CTGGCCGCCG AGATGGACTC
GTTTCAAACG CCGTGGAGAC CCCAAGCAAC TTGCCCCCTC CCTTCGCCGA CTATGCTTTC CTTGTGCAAA TCTTCGCCAG AAAAGGATTC ACTGAGAAAG AGATGGTAGT TCTTTCAGGT
TCTCACACAA TCGGTATCAC TCATTGCGGG TTGCTTGAGG GCCGTCTGTA CAATGGCACT GGACCCAATG GAGTCGATCC TACTCTTGAT TCGACTTACG CTGCTCAGCT GAAGCAGCAG
TGCCCGTTTG GAGCAGACAT GGTGGAGGTC CAGATGGACC CTACCAACGG CGGAAACACT TTCGACAGTA TGTACTACAC TAGACTCATG GAGAAGAAAG GACTGTTTAT ATCTGACGAC
AATTTAATTC GAACTGCCAG TGGCTTGGCC TTGGTACAAG CTCAGGCTGC CGACAGCCGT GTTCCATTCA TTTCAGATTT CGGAGCTGCA ATGGAGAAGA TGATAGTTCT CGAAACTCTC
ACAGCTCCAA ATGGACAGAT TAGGAAAGAC TGCAAATTCA TTAACTAG
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Retrieve as FASTA
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