View Redoxidase 6592

Entry information : PabeTPO

Entry ID	6592
Creation	2009-02-17 (Christophe Dunand)
Last sequence changes	2011-01-26 (Christophe Dunand)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2011-01-26 (Christophe Dunand)

Peroxidase information: PabeTPO

Name

PabeTPO

Class

Thyroid peroxidase [Orthogroup: TPO001]*

Taxonomy

Eukaryota Metazoa Chordata Mammalia Hominidae Pongo

Organism

Pongo abelii (Sumatran orangutan) [TaxId: 9601 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PabeTPO start..stop	S start..stop
PpyTPO	1655	0	1..795	1..795
HsTPO01	1618	0	1..795	1..795
GgoTPO	1598	0	1..795	1..793
MmulTPO01	1528	0	1..795	1..795

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6592' 'complement(join(1..191,589..797,2672..2909,9790..9960,12940..13198,20824..21342,42182..42388,44644..44773,71356..71488,74256..74425,82898..82982,90582..90675))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	90582..90675	92	N° 2	82898..82982	83	N° 3	74256..74425	168	N° 4	71356..71488	131
N° 5	44644..44773	128	N° 6	42182..42388	205	N° 7	20824..21342	517	N° 8	12940..13198	257
N° 9	9790..9960	169	N° 10	2672..2909	236	N° 11	589..797	207	N° 12	1..191	189
complement(join(1..191,589..797,2672..2909,9790..9960,12940..13198,20824..21342, 42182..42388,44644..44773,71356..71488,74256..74425,82898..82982,90582..90675))

Literature and cross-references PabeTPO

DNA ref.	GenBank: NC_012592.1 (111523636..111432037) [Fragment]
mRNA ref.	GenBank: XM_002812340.1 [Fragment]

Protein sequence: PabeTPO

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	801 (783)
PWM (Da):	88815.19 (86955.2)	Transmb domain:	i5-27o
PI (pH):	6.29 (6.29)	Peptide Signal:	cut: 19 range:19-801

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MRALAVLSVT LVMACTEAFF PFISRGKELL WGKPEESHVA SILEESKRLV DTAMYATMQR NLKKRGILSP AQLLSFSKLP EPTSGVIARA AEIMETSIQA MKRNVNLKTQ QSQHPTDALS EDLLSIIANM SGCLPYMLPP KCPNTCLANK YRLITGACNN RDHPRWGASN TALARWLPPV YEDGFSQPRG WNPGFLYNGF PLPPVREVTR HVIQVSNEVV TDDDHYSDLL MAWGQYIDHD IAFTPQSTSK AAFGGGADCQ MTCENQNPCF PIQLPEEARP AAGTACLPFY RSSAACGTGD QGALFGNLST ANPRQQMNGL TSFLDASTVY GSSPALERQL RNWTSAEGLL RVHASLRDSG RAYLPFAPPR APAACAPEPG VPGETRGPCF LAGDGRASEV PSLTALHTLW LREHNRLAAA LKTLNAHWSA DAVYQEARKV VGALHQIITL RDYIPRILGP EAFQQYVGPY EGYDSTANPT VSNVFSTAAF RFGHATIHPL VRRLDASFQE HPDLPGLWLH QAFFSPWTLL RGGGLDPLIR GLLARPAKLQ VQDQLMNEEL TERLFVLSNS STLDLASINL QRGRDHGLPG YNEWREFCGL PRLETPADLS TAIASRSVAD KILDLYKHPD NIDVWLGGLA ENFLPRARTG PLFACLIGKQ MKALRDGDWF WWENSHVFTD AQRHELEKHS LSRVICDNTG LTRVPVDAFQ VGKFPEDFES
CDSIPGMNLE AWRETFPQDD KCGFPENVEN GDFVHCEESG RRMLVYSCWH GYELQGREQL TCTQEGWDFQ PPLCKGQSFL Q

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 2a, 12 introns). 3'end is missing

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGAGAGCGC TTGCTGTCCT GTCTGTCACG CTGGTTATGG CCTGCACAGA AGCCTTCTTC CCTTTCATCT CGAGAGGGAA AGAACTCCTT TGGGGAAAGC CTGAGGAGTC TCATGTCGCC AGCATCTTGG AGGAAAGCAA GCGCCTGGTG GACACCGCCA TGTACGCCAC GATGCAGAGA AACCTCAAAA AAAGAGGAAT CCTTTCTCCA GCTCAGCTTC TGTCTTTTTC CAAACTTCCT GAGCCAACAA GTGGAGTGAT TGCCCGAGCA GCAGAGATAA TGGAAACATC AATACAAGCG ATGAAAAGAA ACGTCAACCT GAAAACTCAA CAATCACAGC ATCCAACGGA TGCTTTATCA GAAGATCTGC TGAGCATCAT TGCAAACATG TCCGGATGTC TCCCTTACAT GCTGCCCCCA AAATGCCCAA ACACTTGCCT GGCAAACAAA TACAGGCTCA TCACGGGAGC TTGCAACAAC AGAGACCACC CCAGATGGGG CGCCTCCAAC ACGGCCCTGG CACGATGGCT CCCTCCAGTC TACGAGGATG GCTTCAGTCA GCCCCGAGGC TGGAACCCCG GCTTCTTGTA CAACGGGTTC CCACTGCCCC CGGTCCGGGA GGTGACAAGA CATGTCATTC AAGTTTCAAA TGAGGTTGTC ACAGATGATG ACCACTATTC TGACCTCCTG ATGGCATGGG GACAATACAT CGACCACGAC ATCGCGTTCA CACCACAGAG CACCAGCAAA GCTGCCTTCG GGGGAGGGGC TGACTGCCAG ATGACTTGTG AGAACCAAAA CCCATGTTTT CCCATACAAC TCCCGGAGGA GGCTCGGCCG GCCGCGGGCA CCGCCTGTCT GCCCTTCTAC CGCTCTTCGG CCGCCTGCGG CACCGGGGAC CAAGGCGCGC TCTTTGGGAA CCTGTCCACG GCCAACCCGC GGCAGCAGAT GAACGGGTTG ACCTCATTCC TGGACGCGTC CACCGTGTAT GGCAGCTCCC CGGCCCTAGA GAGGCAGCTG CGGAACTGGA CCAGTGCCGA AGGGCTGCTC CGCGTCCACG CGAGCCTCCG GGACTCCGGC CGCGCCTACC TGCCCTTCGC GCCGCCACGC GCGCCTGCGG CCTGTGCGCC CGAGCCCGGC GTCCCCGGAG AGACCCGCGG GCCCTGCTTC CTGGCCGGAG ACGGCCGCGC CAGCGAGGTC CCCTCCCTGA CGGCGCTGCA CACGCTGTGG CTGCGCGAGC ACAACCGCCT GGCCGCGGCG CTCAAGACCC TCAATGCGCA CTGGAGCGCG GACGCCGTGT ACCAGGAGGC GCGCAAGGTC GTGGGCGCTC TGCACCAGAT CATCACCCTG AGGGATTACA TCCCCAGAAT CCTGGGACCC GAGGCCTTCC AGCAGTACGT GGGTCCCTAT GAAGGCTATG ACTCCACGGC CAACCCCACT GTGTCCAACG TGTTCTCCAC AGCCGCCTTC CGCTTCGGCC ACGCCACGAT CCACCCACTG GTGAGGAGGC TGGACGCCAG CTTCCAAGAG CACCCCGACC TGCCCGGGCT GTGGCTGCAC CAGGCCTTCT TCAGCCCATG GACACTCCTC CGTGGAGGTG GTTTGGACCC ACTAATACGA GGCCTTCTTG CAAGACCAGC CAAACTGCAG GTGCAGGATC AGCTCATGAA CGAGGAGCTG ACGGAAAGGC TGTTTGTGCT GTCCAATTCT AGCACCTTGG ATCTGGCGTC CATCAACCTG CAGAGGGGCC GGGACCACGG GCTGCCAGGT TACAATGAGT GGAGGGAGTT CTGTGGCCTG CCTCGCCTGG AGACCCCCGC TGACCTGAGC ACAGCCATTG CCAGCAGGAG CGTGGCCGAC AAGATCCTGG ACTTGTACAA GCATCCTGAC AACATCGATG TCTGGCTGGG AGGCTTAGCT GAAAACTTCC TCCCCAGGGC TCGGACAGGG CCCCTGTTTG CCTGTCTCAT TGGGAAGCAG ATGAAGGCTC TGCGGGACGG TGACTGGTTT TGGTGGGAGA ACAGCCACGT CTTCACGGAT GCACAGAGGC ATGAGCTGGA GAAGCACTCC CTGTCTCGGG TCATCTGTGA CAACACCGGC CTCACCAGGG TGCCCGTGGA CGCCTTCCAA GTTGGAAAAT TCCCCGAAGA CTTTGAGTCT TGTGACAGCA TCCCTGGCAT GAACCTGGAG GCCTGGAGGG AAACCTTTCC TCAAGACGAC AAGTGTGGCT TCCCAGAGAA CGTGGAGAAT GGGGACTTTG TGCACTGTGA GGAGTCTGGG AGGCGCATGC TGGTGTATTC CTGCTGGCAT GGGTATGAGC TCCAAGGCCG GGAGCAGCTC ACTTGCACCC AGGAAGGATG GGATTTCCAG CCTCCCCTCT GCAAAGGTCA GTCCTTTCTT
CAATGA

Retrieve as FASTA