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Entry information : PcLiP03_RP78 (PcLiPC_RP78)
Entry ID 6835
Creation 2009-05-29 (Christophe Dunand)
Last sequence changes 2011-09-22 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-11-24 (Christophe Dunand)
Peroxidase information: PcLiP03_RP78 (PcLiPC_RP78)
Name (synonym) PcLiP03_RP78 (PcLiPC_RP78)
Class Lignin peroxidase    [Orthogroup: LiP001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete
Organism Phanerochaete chrysosporium    [TaxId: 5306 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PcLiP03_RP78
start..stop		 S start..stop
PcLiP03_BKMF1767 731 0 1..372 1..371
PsoLiP03 665 0 1..372 1..372
PsoLiP07 624 0 1..372 1..373
PcarLiPC 616 0 1..372 1..371
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6835' 'complement(join(393154..393175,393233..393297,393360..393660,393710..393835,393888..393966,394019..394060,394111..394325,394378..394434,394487..394637,394691..394751)) ' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 394691..394751 59 N° 2 394487..394637 149 N° 3 394378..394434 55 N° 4 394111..394325 213
N° 5 394019..394060 40 N° 6 393888..393966 77 N° 7 393710..393835 124 N° 8 393360..393660 299
N° 9 393233..393297 63 N° 10 393154..393175 20  
complement(join(393154..393175,393233..393297,393360..393660,393710..393835,3938 88..393966,394019..394060,394111..394325,394378..394434,394487..394637,394691..3 94751))


exon

Literature and cross-references PcLiP03_RP78 (PcLiPC_RP78)
DNA ref. JGI genome:   scaffold_19 (394751..393154)
mRNA ref. JGI transcript:   131738
Protein sequence: PcLiP03_RP78 (PcLiPC_RP78)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   372 (351)
PWM (Da):   %s   39241.18 (37086.9) Transmb domain:   %s   i5-27o
PI (pH):   %s   4.15 (4.02) Peptide Signal:   %s   cut: 22 range:22-372
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFKKLLAVLTAALSLRAAQGAAVEKRATCSNGKVVPAASCCTWF
NVLSDIQENLFNGGQCGAEAHESIRLVFHDAIAISPAMEAAGQFGGGGADGSIMIFDEIETNFHPNIGLDEIVRLQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAATQPAPDGLV
PEPFHSVDQIIDRVFDAGEFDELELVWMLSAHSVAAANDIDPNIQGLPFDSTPGIFDSQFFVETQLAGTGFTGGSNNQGEVSSPLPGEMRLQSDFLIARDARTACEWQSFVNNQSKLVSD
FQFIFLALTQLGQDPDAMTDCSAVIPISKPAPNNTPGFSFFPPGMTMDDVEQCAETPFPTLSTLPGPATSVARIPPPPGA

Retrieve as FASTA  
Remarks Complete sequence from genomic (9 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCAAGAAGCTCCTTGCTGTTCTTACCGCCGCTCTCTCCCTCCGTGCTGCTCAGGGTGCGTCCCGGATGGCTACCGACGCATTGCCCAAACTAACAGCTACGCGATAGGTGTGC
GGCCGTTGAGAAGCGCGCGACTTGCTCGAACGGCAAGGTCGTCCCCGCGGCGTCCTGCTGCACCTGGTTCAACGTTCTGTCCGATATCCAGGAGAACCTCTTCAATGGCGGCCAGTGTGG
CGCCGAGGCTCATGAGTCGATCCGTCTGTAAGCATACTGTTACTCGCCGCACAGTGCTTGCCTCTTAACGCCGCCCTAGCGCGTCTTCCACGACGCCATCGCTATCTCTCCCGCTATGGA
GGCCGCAGGCCAGTTCGGGTGTGTATCCATCGGCTTCTGCACTGGCATGGAGCTTGACCGTGGACGTTAGTGTGGCGGAGGCGCCGATGGTTCTATCATGATCTTCGACGAGATCGAGAC
CAACTTCCATCCCAACATCGGTCTCGACGAGATCGTCCGCCTGCAGAAGCCGTTCGTCCAGAAGCACGGTGTCACTCCCGGTGACTTCATCGCCTTCGCTGGCGCGGTGGCGCTCAGTAA
CTGCCCCGGTGCTCCGCAGATGAACTTCTTCACTGGTCGTGCTCCGGGTACGTTGCAAAATGCGGAATTGATACAATGTTACTCATTTCGAGGACAGCACAACTCAGCCAGCCCCTGACG
GCCTCGTCCCAGAGCCCTTCCGTACGTCGAATCATCCTGTGACCTCTCATCAATATACTGACAAATCCTGCAGACACTCTGTTGACCAAATCATCGACCGTGTCTTCGATGCCGGTGAAT
TCGATGAGCTCGAGCTCGTCTGGATGCTCTCTGCGTTAGTGTCTCCTGGAGCCCTTGTTTTCATGCACTGACCAGTTTCGCTACAGACACACTCCGTCGCGGCTGCCAACGATATCGACC
CGAACATCCAGGGCTTGCCCTTCGACTCGACCCCCGGTATTTTCGATTCCCAGTTCTTCGTCGAGACTCAGCTTGCTGGCACCGGCTTCACTGGGTTGGTACTTTATCACTTGCGCTGGA
CCGCGGGCTGATCGTTCTCGCAGCGCGGTTCTAACAACCAGGGCGAAGTTTCCTCCCCGCTTCCAGGCGAGATGCGTCTCCAGTCTGACTTCCTGATCGCTCGCGACGCGCGCACCGCTT
GCGAGTGGCAGTCGTTCGTCAACAACCAGTCCAAGCTCGTCTCCGACTTCCAGTTCATCTTCCTCGCCCTCACTCAGCTCGGCCAGGACCCGGATGCGATGACCGACTGCTCTGCTGTCA
TCCCCATCTCCAAGCCCGCCCCGAACAACACCCCCGGATTCTCCTTCTTCCCGCCCGGCATGACGATGGACGATGTCGAGCAGGCTGTACGTTCCACCGTCCCCCCACACTGATACAGGA
CTCCCTGACTGACGATCCTTATGTTTAGTGTGCGCCGAGACGCCCTTCCCGACTCTCTCGACTCTCCCTGGCCCTGCGACCTCCGTCGCTCGCATGTGGGTACCTCTAGCCCTCTGGTGG
CGGTATATGAGCTGATTACGAATGATATCTAGCCCCCTCCTCCTCCTGGTGCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCAAGAAGCTCCTTGCTGTTCTTACCGCCGCTCTCTCCCTCCGTGCTGCTCAGGGTGCGGCCGTTGAGAAGCGCGCGACTTGCTCGAACGGCAAGGTCGTCCCCGCGGCGTCC
TGCTGCACCTGGTTCAACGTTCTGTCCGATATCCAGGAGAACCTCTTCAATGGCGGCCAGTGTGGCGCCGAGGCTCATGAGTCGATCCGTCTCGTCTTCCACGACGCCATCGCTATCTCT
CCCGCTATGGAGGCCGCAGGCCAGTTCGGTGGCGGAGGCGCCGATGGTTCTATCATGATCTTCGACGAGATCGAGACCAACTTCCATCCCAACATCGGTCTCGACGAGATCGTCCGCCTG
CAGAAGCCGTTCGTCCAGAAGCACGGTGTCACTCCCGGTGACTTCATCGCCTTCGCTGGCGCGGTGGCGCTCAGTAACTGCCCCGGTGCTCCGCAGATGAACTTCTTCACTGGTCGTGCT
CCGGCAACTCAGCCAGCCCCTGACGGCCTCGTCCCAGAGCCCTTCCACTCTGTTGACCAAATCATCGACCGTGTCTTCGATGCCGGTGAATTCGATGAGCTCGAGCTCGTCTGGATGCTC
TCTGCACACTCCGTCGCGGCTGCCAACGATATCGACCCGAACATCCAGGGCTTGCCCTTCGACTCGACCCCCGGTATTTTCGATTCCCAGTTCTTCGTCGAGACTCAGCTTGCTGGCACC
GGCTTCACTGGCGGTTCTAACAACCAGGGCGAAGTTTCCTCCCCGCTTCCAGGCGAGATGCGTCTCCAGTCTGACTTCCTGATCGCTCGCGACGCGCGCACCGCTTGCGAGTGGCAGTCG
TTCGTCAACAACCAGTCCAAGCTCGTCTCCGACTTCCAGTTCATCTTCCTCGCCCTCACTCAGCTCGGCCAGGACCCGGATGCGATGACCGACTGCTCTGCTGTCATCCCCATCTCCAAG
CCCGCCCCGAACAACACCCCCGGATTCTCCTTCTTCCCGCCCGGCATGACGATGGACGATGTCGAGCAGGCTTGCGCCGAGACGCCCTTCCCGACTCTCTCGACTCTCCCTGGCCCTGCG
ACCTCCGTCGCTCGCATCCCTCCTCCTCCTGGTGCTTAA

Retrieve as FASTA