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Entry information : SmPrx18-2_30 (SmPrx18b_30)
Entry ID 6990
Creation 2009-10-06 (Christophe Dunand)
Last sequence changes 2009-10-06 (Christophe Dunand)
Sequence status complete
Reviewer Paula Nunes
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx18-2_30 (SmPrx18b_30)
Name (synonym) SmPrx18-2_30 (SmPrx18b_30)
Class Class III peroxidase    [Orthogroup: Prx053]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx18-2_30
start..stop		 S start..stop
SmPrx18-1_79 682 0 1..334 1..334
SmPrx01-1_122 327 1.19e-111 28..324 25..321
SmPrx01-2_114 325 5.75e-111 28..324 25..321
SmPrx09-2_89 323 3.09e-110 4..333 9..338
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6990' 'complement(join(556829..557265,557322..557487,557541..557735,557857..558063))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 557857..558063 205 N° 2 557541..557735 193 N° 3 557322..557487 164 N° 4 556829..557265 435
complement(join(556829..557265,557322..557487,557541..557735,557857..558063))


exon

Literature and cross-references SmPrx18-2_30 (SmPrx18b_30)
DNA ref. Phytozome 12:   scaffold_30 (558063..556829)
mRNA ref. JGI transcript:   104946
Protein sequence: SmPrx18-2_30 (SmPrx18b_30)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   334 (311)
PWM (Da):   %s   36404.58 (33957.4)  
PI (pH):   %s   7.69 (7.73) Peptide Signal:   %s   cut: 24 range:24-334
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKFLVLMFAVFACSSVLLSSSDALEIGYYNKVCPLAEAIVSATVF
KHFLQNRTVPAALIRLHFHDCFVRGCDGSLLLDVTPGGEVVEKEALPNKGSVRGFEIIDEAKDAITAVCGNVVSCADVLALSARDSFFLTSGLYYNLPTGRFDGRTSLASEAIPNLPAFTLTAAELKANFARKKLNTNDLIVLSGGHTLGRATCAAFTHRLYNFQNTSRPDPTLSQDYLRILRGICPQSGNPSPRVQLDKGTEFIFDNSYYAEIVKNNGLLQTDQELLFDQETSATIRSFAKDNLSFLKQFSQSMINMGAIEVK
TAKDGEIRRKCNVPNSGRISSHATE

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGTTCCTAGTGCTGATGTTTGCCGTGTTCGCGTGTTCTTCGGTGTTGTTGAGCTCCTCCGACGCTCTGGAGATCGGCTACTACAACAAGGTCTGCCCGCTCGCGGAAGCGATCGTC
TCGGCCACCGTCTTTAAGCACTTCTTGCAAAACCGGACCGTCCCAGCGGCGCTCATCCGGCTGCATTTCCACGATTGTTTTGTGAGGGTAAAGTTCTTCTTGGCTTGGATCTTTGGATCA
TCAATGTTTATTTCTTTGGATCGTCACTCAATTGTTTGGCACCGACAACGTTCTAGCTAAATGACGTTATATGACTGTTCTTTGACAGGGGGGTGTGATGGATCGTTGTTGCTGGACGTT
ACACCCGGTGGCGAAGTCGTGGAGAAGGAAGCCCTTCCCAACAAAGGCTCCGTGCGAGGATTCGAGATCATCGACGAAGCCAAAGACGCCATCACCGCCGTGTGTGGAAACGTTGTGTCG
TGCGCAGATGTCCTCGCCCTCTCGGCCCGGGACTCTTTCTTCCTGGTAAGTTTTGCAAGAACTCCTCGGTTAAAACTTTAAATTCTAATGTGGAGCAGACACTAGTGGACTCTATTATAA
TTTACCCACGGGGAGATTCGATGGAAGAACGTCGCTGGCGTCGGAGGCTATCCCAAACCTCCCGGCATTTACCCTCACTGCGGCGGAGCTCAAGGCTAACTTTGCTAGAAAGAAACTCAA
CACAAACGATCTCATCGTCCTCTCAGGTGAACTTAGTATGATCCGGGAGCCTTTCACTGAAAGATGTGGGCAATCTTCGCAGGAGAGGACACACTCTCGGACGAGCAACCTGTGCGGCAT
TCACCCACAGGCTCTACAATTTCCAGAACACGAGCCGCCCGGATCCAACTCTCAGCCAGGACTACTTGAGGATCTTGCGTGGGATTTGTCCCCAGTCCGGGAATCCCAGCCCGCGGGTCC
AGCTCGACAAAGGCACCGAGTTTATCTTTGACAACAGCTACTACGCGGAAATTGTCAAAAACAATGGGCTGCTCCAGACGGATCAAGAGCTCCTGTTTGATCAGGAGACCAGCGCGACTA
TCCGTAGCTTTGCCAAGGATAATCTCAGCTTCTTGAAGCAATTCTCTCAGTCCATGATCAACATGGGGGCGATCGAGGTTAAAACTGCAAAGGATGGAGAGATCCGGAGGAAGTGTAATG
TTCCAAACAGTGGGCGCATATCCAGCCATGCAACTGAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGTTCCTAGTGCTGATGTTTGCCGTGTTCGCGTGTTCTTCGGTGTTGTTGAGCTCCTCCGACGCTCTGGAGATCGGCTACTACAACAAGGTCTGCCCGCTCGCGGAAGCGATCGTC
TCGGCCACCGTCTTTAAGCACTTCTTGCAAAACCGGACCGTCCCAGCGGCGCTCATCCGGCTGCATTTCCACGATTGTTTTGTGAGGGGGTGTGATGGATCGTTGTTGCTGGACGTTACA
CCCGGTGGCGAAGTCGTGGAGAAGGAAGCCCTTCCCAACAAAGGCTCCGTGCGAGGATTCGAGATCATCGACGAAGCCAAAGACGCCATCACCGCCGTGTGTGGAAACGTTGTGTCGTGC
GCAGATGTCCTCGCCCTCTCGGCCCGGGACTCTTTCTTCCTGACTAGTGGACTCTATTATAATTTACCCACGGGGAGATTCGATGGAAGAACGTCGCTGGCGTCGGAGGCTATCCCAAAC
CTCCCGGCATTTACCCTCACTGCGGCGGAGCTCAAGGCTAACTTTGCTAGAAAGAAACTCAACACAAACGATCTCATCGTCCTCTCAGGAGGACACACTCTCGGACGAGCAACCTGTGCG
GCATTCACCCACAGGCTCTACAATTTCCAGAACACGAGCCGCCCGGATCCAACTCTCAGCCAGGACTACTTGAGGATCTTGCGTGGGATTTGTCCCCAGTCCGGGAATCCCAGCCCGCGG
GTCCAGCTCGACAAAGGCACCGAGTTTATCTTTGACAACAGCTACTACGCGGAAATTGTCAAAAACAATGGGCTGCTCCAGACGGATCAAGAGCTCCTGTTTGATCAGGAGACCAGCGCG
ACTATCCGTAGCTTTGCCAAGGATAATCTCAGCTTCTTGAAGCAATTCTCTCAGTCCATGATCAACATGGGGGCGATCGAGGTTAAAACTGCAAAGGATGGAGAGATCCGGAGGAAGTGT
AATGTTCCAAACAGTGGGCGCATATCCAGCCATGCAACTGAGTAA

Retrieve as FASTA