View Redoxidase 7149

Entry information : SbPrx23_BTx623 (Sobic.001G528100.1[2.1] / SB01G049140[1.4])

Entry ID	7149
Creation	2010-01-12 (Christophe Dunand)
Last sequence changes	2011-01-21 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbPrx23_BTx623 (Sobic.001G528100.1[2.1] / SB01G049140[1.4])

Name (synonym)

SbPrx23_BTx623 (Sobic.001G528100.1[2.1] / SB01G049140[1.4])

Class

Class III peroxidase [Orthogroup: Prx021]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrx23_BTx623 start..stop	S start..stop
SofPrx03	606	0	26..333	23..330
ZmPrx28	554	0	30..333	23..329
SiPrx154	529	0	1..333	1..331
OsPrx33	516	0	10..333	5..331

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7149' 'join(72125635..72125871,72126305..72126493,72128238..72128813)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	72125635..72125871	235	N° 2	72126305..72126493	187	N° 3	72128238..72128813	574
join(72125635..72125871,72126305..72126493,72128238..72128813)

Literature and cross-references SbPrx23_BTx623 (Sobic.001G528100.1[2.1] / SB01G049140[1.4])

DNA ref.	Phytozome 12: chromosome_1 (72125635..72128813)
EST ref.	GenBank: CN126734.1 [5' end]

Protein sequence: SbPrx23_BTx623 (Sobic.001G528100.1[2.1] / SB01G049140[1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	333 (307)
PWM (Da):	33866.88 (31459.6)	Transmb domain:	i7-29o
PI (pH):	5.73 (4.85)	Peptide Signal:	cut: 27 range:27-333

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGGRRSRGGGASGLLVWAVAIAAAAAAAVSRAQLQVGFYDTLCPA
AEIIVQEEVSKAASGNPGVAAGLLRLHFHDCFVRGCDGSVLLDSTAGNQAEKDAAPNASLRGFEVIDSAKTRLEQACFGVVSCADILAFAARDALALVGGNAYQVPAGRRDGNVSSAQEAGANLPPPTASVSRLNQVFGAKGLTQADMVALSGA
HTVGAARCSSFNGRLYSYGPSGAGQDPSMDPAYLAALTQQCPQVQGSDPAVPMDPVTPTTFDTNYYANLVAKRGLLASDQALLADPTTAAQVVGYTNSPATFQTDFVAAMLKMGNIEVLT
GTAGTIRTNCRVAS*

Retrieve as FASTA

Remarks

Complete sequence from 14 ESTs and genomic (chromo 1, introns 1 and 2). cultivar="BTx623". .

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGGGGACGACGCAGTAGAGGAGGAGGCGCGTCGGGCCTGCTAGTGTGGGCGGTGGCGATTGCGGCGGCGGCGGCGGCGGCGGTGTCGCGGGCGCAGCTGCAGGTGGGGTTCTACGAC
ACGCTGTGCCCGGCGGCGGAGATCATCGTGCAGGAGGAGGTCAGCAAGGCGGCGTCCGGCAACCCCGGCGTCGCCGCGGGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGG
TCAGTGCGCGCTCTCTCTTCGATCCATTATTGATGATGAATGACAGCACGGCATGCCGTACAGCTGCTTCGATTCACCTACTATCTGCTACAATTAGCAAGCACGCTGCTGCTGCGCCTT
GCGTACAAGAGGAGGAGAGAAGCTTCGAGTGATCCAATGCAACGTGGTGTCACCCTGCCTCGCTTGCATTGCGTAGTTGCATGTGAAGCTTGCCTGCCTGCCTCTCCTTCCTCTGTTCAT
TCATTCATTCCCCTCCACGCACATATTCGTATTTTTGTCTCCTCGACTTGTTTTACAGCGATAAAGCTATTCATCTGACACATGAGTCACATGCATGCAGTAGAAGCAACAGGAACATCA
TCGATCAGTTTTATTTTCTTCTACTGACTGATAGCGAGCTGTGTTGTACTGACGACGACGCATGCATTGCAGGGGTGCGACGGGTCGGTCCTGCTGGACTCGACGGCGGGCAACCAGGCG
GAGAAGGACGCGGCGCCGAACGCGAGCCTGCGCGGGTTCGAGGTGATCGACAGCGCCAAGACGCGGCTGGAGCAGGCCTGCTTCGGCGTCGTCTCCTGCGCCGACATCCTCGCCTTCGCC
GCCCGCGACGCCCTCGCGCTGTGGTACGCACTGCTCCCCCTCCCTCCCTCCCTGTGCACCAGTGTCAACTACCTCGCGCTCTCTCACTCTCTCAGTCCACCTACCTTCCAGCTGCTCTGC
TCATCCACTAGCTTCTCCTCCTATCCGGTGGTTCACTTGAGTCAGCAGTAGTAAATAACAAACACAAAACGACTCCCATCCCAAGATAGAACGCAGAGCTCGATATCGGTCTAGGATCAC
GCGCGCGACGCAGTGCAAGTGAAGAGGCATGGCCCGGCCGATTCGTCGGTGCCTCCTTGCCTTTCTGGACGTTTTTTTTTTCTTCCCCCTTCCTTTCTGGATGGGAGATGGATGGTTGCC
AGGACAGCAGCGTCTTTGGAATGGAAGCGTAAAAAATGGGGACTTTTTTGCTTGTGATTCAGCGATCGCAAGGCCGTCCAGGTCCAGCCTTTCGCGGAAAGCAAGCCCTGGTTGATTGGC
GACTCCACCGAATGATGATGCCCTGTACTGCACGTACGCGCACGTAGGCCGCGGTCGGGCATCGGGTGCGGCCTGCCTGCCTGCCTCCGAAGCAAGCGCACGCACGGTGGCCGTGCAGTG
CAGTGCAGCTAGCAGCCGGCAGGGTGATGCTCCGGCAGAGAGGAGAGGCGTTCGTTTCTTTAGGTGCACGTCTCGGTTTTGTTTGGTTGTTCGGTTCGTTACCGTGCGCATGCACGGGCC
TACCGGTGGGTCGGCGGTGTCCGTAGCAGCAGCAACGGCACATGGTTGTGTCGTGTCGCCCTCCAAAGGCTCAGCGTAGGAGAGGGAGAGAAGCCCAGGACCCCTTTCCCTTAAAACTTT
CTTCTGGAGGTGAAGATGGCATTAAGGAAGTACTTTGTTCAGTTCAGGAATAATAGGAATAGTACTCCATTTGCCTTGGGCTGGGGCCAATTTAGCACTGCAAAAACAAGAAGAATGCTC
GTCTGCCGAATGCCGTTAGGGTCACTGGATTCCATATCGCTATATTTACTGCTCACATGACGGTTGTTTCACACTGTAATGTTTGGCTTGGGACGATATATGGATTGGTCCTATGTGGTC
TGTGCTAACTTGGTCAGCTACATTCTGAACTAGGAGAACCTGGGCACAATTACTAGTGCTGACAACCCGAAAAACACATTGATACGATACCATTAAGTCAACTGATCACGTTCAGCATTA
AACATGCTGGTCGAGCCTGACTGAGGTGCTGCATCCCCGTTCTAGTATTTGGACAAGCAGCATCTTGTGCACGCGCCGGCAGTATCACCAGCTGGTGAGACGACTGTGAAGTCGGCGTCA
CACTGTCACTCATGGTCGTTGCAGCTAGCCAGGGAGCGTAGCGTACGAAACAGAACTTTCCATTACGCAGCTGCAAAACAGAGCACGACGCTGCTAAGAGCCGTCGAGGCAGCATCAAAA
TCCGGCGGCGGTTTGACGTCCATGTCTCGACGAGGCGGCCAGCCTTGGGAACGCGGCGTGGGGCACGCCAGGACACGTTCGTGGGCGCATGGTTTTTCGTGGATCCGACGCGCACCCCAT
GTGCACTGCCCCGGGCCCGGCACGTCCACATGGCCTTGTTGCTCTGCCGTCGCAGTCTCCCGCACCCGCCCACCACCCGGAGGGTGGCGACCGGACGTTCCGGGTTCGCAGGCATGTGCC
AGCTCAGCTCGCGTTCGCTGGCTGGCGTGGCGGTTACTGACGAAAGCTCCGGCTAAAAGTGTTCTGTTCTGTCTGATGATAATGCAGGTCGGGGGCAACGCGTACCAGGTGCCGGCTGGT
CGGAGGGACGGCAACGTCTCGTCGGCGCAGGAGGCGGGCGCGAACCTGCCGCCGCCGACGGCGAGCGTGAGCCGGCTGAACCAGGTGTTCGGCGCCAAGGGGCTGACCCAGGCGGACATG
GTGGCGCTGTCGGGCGCGCACACGGTGGGCGCCGCGCGCTGCAGCTCCTTCAACGGCCGGCTCTACTCGTACGGTCCCAGCGGCGCCGGGCAGGACCCGTCCATGGACCCCGCGTACCTG
GCGGCGCTCACGCAGCAGTGCCCGCAGGTGCAGGGGAGCGACCCGGCGGTGCCCATGGACCCCGTCACGCCCACCACCTTCGACACCAACTACTACGCCAACCTGGTCGCCAAGCGCGGC
CTGCTCGCCTCCGACCAGGCGCTGCTCGCCGACCCGACCACCGCCGCGCAGGTGGTCGGATACACCAACAGCCCCGCCACGTTCCAGACCGACTTCGTCGCCGCCATGCTCAAGATGGGC
AACATCGAGGTGCTCACCGGCACCGCCGGCACCATCCGGACCAACTGCAGGGTGGCTAGCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA