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Entry information : SmAPx05-1_109 (SmAPx05a_109)
Entry ID 7202
Creation 2010-02-10 (Christophe Dunand)
Last sequence changes 2010-02-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmAPx05-1_109 (SmAPx05a_109)
Name (synonym) SmAPx05-1_109 (SmAPx05a_109)
Class Ascorbate peroxidase    [Orthogroup: APx2018]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx05-1_109
start..stop		 S start..stop
SmAPx05-2_59 583 0 1..286 1..286
CescAPx01 386 1.08e-136 1..246 1..244
HargAPx03 386 1.28e-136 5..246 3..244
LsaAPx02 385 2.88e-136 5..280 3..274
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7202' 'complement(join(503960..504145,504196..504298,504369..504448,504498..504580,504656..504704,504759..504824,504892..504941,504999..505123,505184..505302))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 505184..505302 117 N° 2 504999..505123 123 N° 3 504892..504941 48 N° 4 504759..504824 64
N° 5 504656..504704 47 N° 6 504498..504580 81 N° 7 504369..504448 78 N° 8 504196..504298 101
N° 9 503960..504145 184  
complement(join(503960..504145,504196..504298,504369..504448,504498..504580,5046 56..504704,504759..504824,504892..504941,504999..505123,505184..505302))


exon

Literature and cross-references SmAPx05-1_109 (SmAPx05a_109)
DNA ref. Phytozome 12:   scaffold_109 (505302..503960)
mRNA ref. JGI transcript:   131845
Protein sequence: SmAPx05-1_109 (SmAPx05a_109)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   286
PWM (Da):   %s   31625.75 Transmb domain:   %s   o263-285i
PI (pH):   %s   4.67
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAEVPLVDDEYVMEIEEARQELRGMIVEKQCAPIMLRLAWHDAGTYDRETKTGGPNGSIRLEGEYNHFANRGIKAAIDLEEIKEKCPKISYADLYLAGVTAVEVTGGPTINFVSGRKDS
SVIPPEGRLPDASQGANHLRDVFGRMGLNDKDIVALSGGHTGRAHKDRSGFDGPWTSNPLTFDNSYFIELIEGEKTGLLKLPTDTCLMDDKVFRQYVETYADKDTFFRDYAWSHKKLSEL
GFIDHPDETQENTYDSSFTSITILIGVVITAAAVGLVAMIWS*

Retrieve as FASTA  
Remarks Complete sequence from geneomic (8 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGCTGAAGTTCCCCTTGTTGATGATGAGTATGTCATGGAAATCGAGGAGGCCAGGCAAGAGCTCCGTGGAATGATTGTTGAGAAGCAATGTGCTCCGATCATGCTAAGGCTAGCG
TAAGTGAATATATGGAGCTTGGTTTATTTGTATGATCTTGAAACATTTTTTTCTTTAAGGTGTGGCATGATGCAGGAACCTATGATCGGGAAACAAAAACAGGAGGTCCAAATGGATCAA
TTCGACTAGAGGGTGAATATAATCATTTTGCAAATAGGGGCATTAAGGCTGCTATTGATCTTTGTGGTGAGTAGAGTTTACTTTTGGCTGAATTCTGCGGTAATCATGATTTATTTTTTC
TAGAGAGGAAATCAAAGAGAAGTGCCCCAAAATAAGCTATGCAGATCTTTACCAGGTTTGCATATTGAAATAAAAAGATAAATAATGTATCTGGCTCATATATATGTTGTTTGGATAATT
AGCTCTAGCAGGAGTTACAGCAGTGGAAGTCACTGGAGGACCAACAATCAATTTTGTTTCAGGAAGAAAAGTATGGTAAAACATTAATCTTTGAACACCATGCATTTTCTTTTTTTTCTT
ACAGGAGATTCTTCAGTAATACCCCCTGAAGGGCGTTTACCAGATGCTTCTCAAGGTCATTGATAATTTCTAAATACTTTTCTTATTGATATGATAATTTTCATTTATGATCTCTAAATT
TGCAATTTAGGTGTGCAAATCACTTGAGAGATGTTTTTGGTAGGATGGGCTTAAATGACAAAGATATAGTTGCATTATCTGGTGGTCATACACTGGTGAGACCTTTGGGATTTATAAAGT
TTTTTTTAAAGACATTTTTGGCAGGGGGAAGAGCTCACAAGGACAGATCAGGATTTGATGGACCATGGACATCAAATCCTCTGACCTTTGACAATTCTTATTTCATGTATAAGTCTTTCT
TCCTGTTCAAGTCTTTTTTTTTACCATTTTTTTTTTCTTCTATCCCATGTGAATAGTGTGAGCTGATTGAAGGAGAAAAAACTGGACTTTTAAAGCTACCAACAGATACGTGTTTGATGG
ATGACAAAGTATTTCGTCAATATGTTGAAACTTATGCCAAGGTAATCGATCACAAGGTTTGTGGAGATGATTATAATAATTTCGAGAGCAGGAGATAAAGACACATTTTTCCGTGATTAT
GCGTGGTCTCATAAGAAATTATCTGAGCTCGGTTTCATCGATCACCCAGATGAAACCCAAGAGAACACATATGATAGCTCATTCACATCAATCACCATATTAATTGGAGTGGTGATCACA
GCAGCAGCAGTGGGTTTAGTTGCAATGATATGGTCATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGCTGAAGTTCCCCTTGTTGATGATGAGTATGTCATGGAAATCGAGGAGGCCAGGCAAGAGCTCCGTGGAATGATTGTTGAGAAGCAATGTGCTCCGATCATGCTAAGGCTAGCG
TGGCATGATGCAGGAACCTATGATCGGGAAACAAAAACAGGAGGTCCAAATGGATCAATTCGACTAGAGGGTGAATATAATCATTTTGCAAATAGGGGCATTAAGGCTGCTATTGATCTT
TGTGAGGAAATCAAAGAGAAGTGCCCCAAAATAAGCTATGCAGATCTTTACCAGCTAGCAGGAGTTACAGCAGTGGAAGTCACTGGAGGACCAACAATCAATTTTGTTTCAGGAAGAAAA
GATTCTTCAGTAATACCCCCTGAAGGGCGTTTACCAGATGCTTCTCAAGGTGCAAATCACTTGAGAGATGTTTTTGGTAGGATGGGCTTAAATGACAAAGATATAGTTGCATTATCTGGT
GGTCATACACTGGGAAGAGCTCACAAGGACAGATCAGGATTTGATGGACCATGGACATCAAATCCTCTGACCTTTGACAATTCTTATTTCATTGAGCTGATTGAAGGAGAAAAAACTGGA
CTTTTAAAGCTACCAACAGATACGTGTTTGATGGATGACAAAGTATTTCGTCAATATGTTGAAACTTATGCCAAGGATAAAGACACATTTTTCCGTGATTATGCGTGGTCTCATAAGAAA
TTATCTGAGCTCGGTTTCATCGATCACCCAGATGAAACCCAAGAGAACACATATGATAGCTCATTCACATCAATCACCATATTAATTGGAGTGGTGATCACAGCAGCAGCAGTGGGTTTA
GTTGCAATGATATGGTCATGA

Retrieve as FASTA