1. Browse the Database
  2. View Redoxidase
Entry information : VpaKat01
Entry ID 7268
Creation 2010-02-25 (Marcel Zamocky)
Last sequence changes 2015-11-03 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-03 (Achraf Jemmat)
Peroxidase information: VpaKat01
Name VpaKat01
Class Catalase    [Orthogroup: Kat001]
Taxonomy Bacteria Proteobacteria Betaproteobacteria Comamonadaceae Variovorax
Organism Variovorax paradoxus    [TaxId: 34073 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VpaKat01
start..stop		 S start..stop
POsKat01 1115 0 3..728 2..724
PnaKat01 988 0 1..728 3..729
PhepKat01 869 0 11..728 4..718
CHpiKat01 854 0 36..728 31..728
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7268' 'join(540697..542883)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 540697..542883 2185  
join(540697..542883)


exon

Literature and cross-references VpaKat01
Literature Lucas S., et al. (2009) Complete sequence of chromosome 1 of Variovorax paradoxus S110. Submitted to the EMBL/GenBank/DDBJ databases
Protein ref. UniProtKB:   C5CJG4
DNA ref. GenBank:   CP001635.1 (540697..542883)
Protein sequence: VpaKat01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   728 (304)
PWM (Da):   %s   79722.31 (33145.8)  
PI (pH):   %s   6.8 (8.72) Peptide Signal:   %s   cut: 27 range:27-330
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MTPQNKAAAG RRSKATDGSN AKQQQLDGFA TDHAPNLTTN QGLQIPDNHN SLKAGVRGPT LLEDFILREK ITHFDHERIP ERAVHARGSA AHGYFQVYKS MSQFTCADFL QDPDAKTPVF  VRFSTVAGSR GSADTVRDVR GFAVKFYTRE GNYDLVGNNI PVFFIQDAMK FPDLIHAVKP EPHHEMPQAA SAHDTFWDFV SLMPESTHML MWAMSDRAIP RSLRMMEGFG VHTFRFVNLR  GESHFVKFHW KPKLGIHGLA WDEAQKVAGK DPDFHRRDLW EAIEQGDFPE WELGVQLVPP DKADSLGFDL LDPTKLIPEE MVPVQRIGRL VLNRNPENFF AETEQVAFHP GHVVPGIDFS  NDPLLQGRLF SYTDTQISRL GGANFHELPI NKSVCPFHNF QRDGMHRQTI ARGQVAYEPN SLGDGKEFRV DGGSVGFQPH PDELESPKVR RRSPSFDDHF TQARLFFNSQ SAAEKEHIVA  AFRFELSKVD VPAIRQRMVD NLAHVDEKLA RRVAEPLGIG APDAKAAAGR AGYREHRMTL PIEESPALSM ADSGDGSIRT RKIAILAADG IDSASLKPIR DALEQAGGKC KVVGARLGTI  ASASKRQIDV DMTFANGPSV VFDAVLIPGG AQGVAALAGM GDAVHFVLEA YKHCKAICTV GDGVQLLSTL GIGANAQQGD APAGIIVAAT PVTNLGDTSE ATQIAQAFIA AIARHRHWDR 
ANIDAIPA 

Retrieve as FASTA  
Remarks strain="S110"
DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACGCCTC AGAACAAGGC CGCCGCCGGA CGCCGCTCGA AGGCCACGGA CGGCAGCAAC GCCAAGCAGC AGCAGCTCGA TGGATTCGCA ACCGATCATG CGCCCAATCT GACGACCAAC  CAGGGTCTTC AGATCCCCGA CAACCACAAT TCGCTCAAGG CCGGGGTGCG CGGGCCCACG CTGCTCGAAG ATTTCATCCT GCGCGAGAAG ATCACGCACT TCGACCACGA GCGCATCCCG  GAGCGCGCGG TGCATGCGCG CGGCTCGGCG GCGCATGGCT ATTTCCAGGT CTACAAGTCG ATGTCGCAGT TCACCTGCGC CGACTTCCTG CAGGACCCGG ACGCAAAGAC GCCCGTTTTC  GTGCGCTTTT CCACCGTGGC CGGCTCGCGC GGCTCGGCCG ACACGGTGCG CGACGTGCGC GGCTTTGCCG TCAAGTTCTA CACCCGCGAG GGCAACTACG ACCTCGTGGG CAACAACATC  CCGGTGTTCT TCATCCAGGA CGCGATGAAG TTTCCCGACC TGATCCACGC CGTCAAGCCC GAGCCGCACC ACGAGATGCC GCAGGCCGCC AGCGCGCACG ACACCTTCTG GGATTTCGTC  TCGCTCATGC CCGAGAGCAC CCACATGCTG ATGTGGGCGA TGAGCGACCG CGCCATCCCG CGCAGCCTGC GCATGATGGA AGGCTTCGGC GTGCACACCT TCCGCTTCGT CAACCTGCGC  GGCGAGAGCC ACTTCGTGAA GTTCCACTGG AAGCCCAAGC TCGGCATCCA TGGCCTCGCA TGGGACGAGG CACAGAAGGT CGCGGGCAAG GACCCCGACT TCCACCGCCG CGACCTGTGG  GAGGCGATCG AGCAGGGCGA CTTTCCCGAG TGGGAGCTCG GCGTGCAGCT GGTGCCGCCC GACAAGGCCG ATTCGCTCGG CTTCGACCTG CTCGACCCCA CCAAGCTGAT CCCCGAGGAG  ATGGTGCCCG TGCAGCGCAT CGGCCGGCTG GTGCTCAACC GCAACCCCGA GAACTTCTTT GCCGAGACCG AGCAGGTGGC CTTCCACCCG GGGCACGTGG TGCCCGGCAT CGACTTCAGC  AACGACCCGC TGCTGCAGGG GCGCCTGTTC TCCTATACCG ACACGCAGAT CTCGCGCCTG GGCGGGGCCA ACTTCCACGA GCTGCCCATC AACAAGAGCG TGTGCCCGTT CCACAACTTC  CAGCGCGACG GCATGCACCG CCAGACCATC GCGCGCGGCC AGGTGGCCTA CGAGCCCAAC TCGCTCGGCG ACGGCAAGGA GTTCAGGGTG GACGGCGGCA GCGTCGGCTT CCAGCCGCAT  CCCGACGAGC TCGAGTCGCC CAAGGTGCGC CGGCGCAGCC CGAGCTTCGA CGACCACTTC ACGCAGGCGC GGCTGTTCTT CAACAGCCAG AGCGCGGCCG AGAAGGAGCA CATCGTTGCG  GCCTTCCGCT TCGAGCTTTC GAAGGTCGAC GTGCCGGCCA TCCGCCAGCG CATGGTCGAC AACCTGGCGC ACGTCGACGA GAAGCTCGCG CGCCGCGTGG CCGAGCCGCT GGGCATCGGC  GCGCCGGACG CCAAGGCGGC CGCGGGCCGC GCGGGCTACC GCGAGCACCG CATGACCCTG CCCATCGAGG AGTCGCCCGC GCTCAGCATG GCCGACAGCG GCGACGGCTC GATCCGCACG  CGAAAGATCG CGATCCTCGC GGCCGACGGC ATCGACTCCG CCTCGCTCAA GCCGATCCGC GATGCGCTCG AGCAGGCCGG CGGCAAGTGC AAGGTGGTGG GCGCCCGCCT GGGCACCATC  GCCAGCGCAT CGAAGCGGCA GATCGACGTC GACATGACCT TCGCCAACGG GCCGTCGGTC GTGTTCGATG CCGTGCTGAT CCCCGGCGGC GCCCAGGGCG TGGCGGCGCT GGCGGGCATG  GGCGATGCGG TGCACTTCGT GCTTGAGGCG TACAAGCACT GCAAGGCCAT CTGCACCGTG GGCGACGGCG TGCAGCTGCT CTCCACGCTC GGCATCGGCG CCAACGCGCA GCAGGGCGAT  GCGCCCGCCG GCATCATCGT GGCGGCCACG CCGGTCACCA ACCTCGGCGA CACCAGCGAG GCGACGCAGA TCGCGCAGGC CTTCATCGCC GCGATTGCCA GGCACCGCCA CTGGGACCGC 
GCCAACATCG ATGCGATTCC CGCCTGA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACGCCTC AGAACAAGGC CGCCGCCGGA CGCCGCTCGA AGGCCACGGA CGGCAGCAAC GCCAAGCAGC AGCAGCTCGA TGGATTCGCA ACCGATCATG CGCCCAATCT GACGACCAAC  CAGGGTCTTC AGATCCCCGA CAACCACAAT TCGCTCAAGG CCGGGGTGCG CGGGCCCACG CTGCTCGAAG ATTTCATCCT GCGCGAGAAG ATCACGCACT TCGACCACGA GCGCATCCCG  GAGCGCGCGG TGCATGCGCG CGGCTCGGCG GCGCATGGCT ATTTCCAGGT CTACAAGTCG ATGTCGCAGT TCACCTGCGC CGACTTCCTG CAGGACCCGG ACGCAAAGAC GCCCGTTTTC  GTGCGCTTTT CCACCGTGGC CGGCTCGCGC GGCTCGGCCG ACACGGTGCG CGACGTGCGC GGCTTTGCCG TCAAGTTCTA CACCCGCGAG GGCAACTACG ACCTCGTGGG CAACAACATC  CCGGTGTTCT TCATCCAGGA CGCGATGAAG TTTCCCGACC TGATCCACGC CGTCAAGCCC GAGCCGCACC ACGAGATGCC GCAGGCCGCC AGCGCGCACG ACACCTTCTG GGATTTCGTC  TCGCTCATGC CCGAGAGCAC CCACATGCTG ATGTGGGCGA TGAGCGACCG CGCCATCCCG CGCAGCCTGC GCATGATGGA AGGCTTCGGC GTGCACACCT TCCGCTTCGT CAACCTGCGC  GGCGAGAGCC ACTTCGTGAA GTTCCACTGG AAGCCCAAGC TCGGCATCCA TGGCCTCGCA TGGGACGAGG CACAGAAGGT CGCGGGCAAG GACCCCGACT TCCACCGCCG CGACCTGTGG  GAGGCGATCG AGCAGGGCGA CTTTCCCGAG TGGGAGCTCG GCGTGCAGCT GGTGCCGCCC GACAAGGCCG ATTCGCTCGG CTTCGACCTG CTCGACCCCA CCAAGCTGAT CCCCGAGGAG  ATGGTGCCCG TGCAGCGCAT CGGCCGGCTG GTGCTCAACC GCAACCCCGA GAACTTCTTT GCCGAGACCG AGCAGGTGGC CTTCCACCCG GGGCACGTGG TGCCCGGCAT CGACTTCAGC  AACGACCCGC TGCTGCAGGG GCGCCTGTTC TCCTATACCG ACACGCAGAT CTCGCGCCTG GGCGGGGCCA ACTTCCACGA GCTGCCCATC AACAAGAGCG TGTGCCCGTT CCACAACTTC  CAGCGCGACG GCATGCACCG CCAGACCATC GCGCGCGGCC AGGTGGCCTA CGAGCCCAAC TCGCTCGGCG ACGGCAAGGA GTTCAGGGTG GACGGCGGCA GCGTCGGCTT CCAGCCGCAT  CCCGACGAGC TCGAGTCGCC CAAGGTGCGC CGGCGCAGCC CGAGCTTCGA CGACCACTTC ACGCAGGCGC GGCTGTTCTT CAACAGCCAG AGCGCGGCCG AGAAGGAGCA CATCGTTGCG  GCCTTCCGCT TCGAGCTTTC GAAGGTCGAC GTGCCGGCCA TCCGCCAGCG CATGGTCGAC AACCTGGCGC ACGTCGACGA GAAGCTCGCG CGCCGCGTGG CCGAGCCGCT GGGCATCGGC  GCGCCGGACG CCAAGGCGGC CGCGGGCCGC GCGGGCTACC GCGAGCACCG CATGACCCTG CCCATCGAGG AGTCGCCCGC GCTCAGCATG GCCGACAGCG GCGACGGCTC GATCCGCACG  CGAAAGATCG CGATCCTCGC GGCCGACGGC ATCGACTCCG CCTCGCTCAA GCCGATCCGC GATGCGCTCG AGCAGGCCGG CGGCAAGTGC AAGGTGGTGG GCGCCCGCCT GGGCACCATC  GCCAGCGCAT CGAAGCGGCA GATCGACGTC GACATGACCT TCGCCAACGG GCCGTCGGTC GTGTTCGATG CCGTGCTGAT CCCCGGCGGC GCCCAGGGCG TGGCGGCGCT GGCGGGCATG  GGCGATGCGG TGCACTTCGT GCTTGAGGCG TACAAGCACT GCAAGGCCAT CTGCACCGTG GGCGACGGCG TGCAGCTGCT CTCCACGCTC GGCATCGGCG CCAACGCGCA GCAGGGCGAT  GCGCCCGCCG GCATCATCGT GGCGGCCACG CCGGTCACCA ACCTCGGCGA CACCAGCGAG GCGACGCAGA TCGCGCAGGC CTTCATCGCC GCGATTGCCA GGCACCGCCA CTGGGACCGC 
GCCAACATCG ATGCGATTCC CGCCTGA 

Retrieve as FASTA