1. Browse the Database
  2. View Redoxidase
Entry information : SmDiOx-1_0 (SmDiOxa_0)
Entry ID 7410
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmDiOx-1_0 (SmDiOxa_0)
Name (synonym) SmDiOx-1_0 (SmDiOxa_0)
Class Alpha-dioxygenase    [Orthogroup: DiOx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmDiOx-1_0
start..stop		 S start..stop
SmDiOx-2_8 1155 0 1..574 1..571
PabDiOx01 711 0 42..574 97..623
CclDiOx02 702 0 7..574 62..623
PsDiOx01 694 0 48..572 107..625
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3393093..3393209 115 N° 2 3393286..3393378 91 N° 3 3393432..3393590 157 N° 4 3393652..3393785 132
N° 5 3393832..3394045 212 N° 6 3394102..3394247 144 N° 7 3394313..3394549 235 N° 8 3394614..3394816 201
N° 9 3394888..3395131 242 N° 10 3395188..3395365 176  
join(3393093..3393209,3393286..3393378,3393432..3393590,3393652..3393785,3393832 ..3394045,3394102..3394247,3394313..3394549,3394614..3394816,3394888..3395131,33 95188..3395365)


exon

Literature and cross-references SmDiOx-1_0 (SmDiOxa_0)
DNA ref. Phytozome 12:   scaffold_0 (3393093..3395364)
mRNA ref. JGI transcript:   229898 [Incorrect prediction]
Protein sequence: SmDiOx-1_0 (SmDiOxa_0)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   574
PWM (Da):   %s   64349.08  
PI (pH):   %s   7.39
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MIPDRPFRRQTHGVAQAPACVLAVLSRHPEDTPPKLQLEKKSSGEHVNVKSGDYGSFIGRNAFAPASGSEELLDPHPSVVATKFLSRKESEFADTGKQFNMIAASWIQFMIHDWVDHQED
TKEQEIVAPESVAAQCPLKEFRFLRTKEDETGSQDIPLGHRNMRTSWWDGSVLYGSHDGALARVRTGKDGKLKIGQNGLLERDDHGVAISGDVKNTWAGVSILQALFVKEHNAVCDMLKR
THPEFGDEELYLHARLVVAAVIAKIHTIDWTVELLKTKALDIGMHANWYGLLGKRIKSWIGHTGSSLLSGFIGMKEPINHGVPYALTEEFTCVYRLHPLLPDDIVLRDITGSGEEKQTKT
PRATGKRIPMIELIGSEGEKTLVAxGNERMIASLGHQACGALVLFNYPQWMRDLPQTGTDGINRPNHVDMAALEIYRDRERKVARYNAFRRNMLMIPIKKWEDLTDDKQTLALLREVYGE
DVEKLDLLVGLLAEKKIKGFAISETSFFIFLLMATRRLEADRFFTSNFNAKSYTKEGLAWVNNTESLKDVLQRHHGNLVDKWLNARSAFSVWSA

Retrieve as FASTA  
Remarks Complete sequence from genomic (
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATACCAGATCGTCCATTTCGTCGACAAACACACGGCGTGGCACAAGCTCCCGCTTGTGTTCTCGCTGTTTTATCTCGACATCCGGAGGACACTCCACCAAAACTACAACTTGAAAAG
TACGTCGGACCTCCAATCTCAGAAGAAGAGAAAAAAGCCGCGCAGGATGACTGCATAGCTCCGCCTTTCCGGAAGAAAAAATCCAGTGGCGAGCACGTCAATGTCAAAAGTGGCGACTAT
GGATCATTCATTGGGAGAAATGCCTTTGCTCCAGCATCCGGATCCGAGAGGTCTCTCTTCTCTCTCTCTCTCTCTCTCATGAGATTCGATTTGCGTCGAGCAGGAACTTTTGGATCCACA
TCCCAGTGTTGTGGCGACCAAATTTCTGTCGAGAAAGGAATCCGAATTCGCGGACACGGGCAAGCAGTTCAACATGATCGCGGCGTCCTGGATCCAGTTTATGATCCACGACTGGGTCGA
CCACCAGGAAGACACAAAAGAGAGGTATGATTCGTGTGATCGAAGCCAAGGATTCTTCTCACGGATGATTTTGTTTTCGATCCAGCAAGAGATTGTAGCTCCGGAATCAGTCGCAGCGCA
GTGTCCCTTGAAGGAATTTCGGTTCCTCCGCACGAAAGAGGACGAAACGGGCTCGCAAGACATCCCTTTGGGGCATAGGAACATGAGAACATCGTGGTGTGGTATGAAACTCTTGTAATT
GGAGGGAAGTTTCATTTTACATTTTAGGGATGGGAGTGTTCTATACGGGAGCCACGACGGTGCGCTGGCGAGGGTGCGCACTGGCAAAGATGGAAAACTTAAGATCGGCCAAAATGGCCT
CCTTGAGCGCGACGATCACGGCGTCGCCATCTCCGGCGATGTCAAGAACACCTGGGCCGGGGTTTCGATTCTCCAGGCGCTTTTCGTCAAGGAGCACAATGCCGTGTGTGACATGCTCAA
GAGGTGCGTGTGCCTCGATCGATCTCTAGCTCTGGATTGCCGCTAAATCGTCGCTCCAGAGGACGCATCCGGAATTCGGGGACGAAGAGCTCTACCTTCATGCGAGATTGGTCGTCGCTG
CCGTGATTGCCAAGATTCACACCATCGACTGGACTGTGGAGCTGCTCAAGACGAAAGCGCTCGACATTGGAATGCATGCAAACTGTGGTGAGCTTTTCTTCTTTACGTCCACCTTTTCTA
GCGATTTCGACTGACTTCGAGAGTGCATCCAGGTATGGTTTACTGGGGAAGAGAATCAAGAGCTGGATCGGGCACACTGGATCCTCGCTGCTGAGTGGATTTATTGGAATGAAGGAGCCA
ATAAACCACGGCGTTCCTTACGCCTTGACGGAGGAGTTTACGTGCGTTTATCGCCTCCATCCTTTGCTACCAGACGACATTGTGCTGAGAGACATCACTGGCAGTGGGGAAGAGAAACAA
ACCAAGACTCCTCGAGCCACTGGAAAGAGAGGTACCTCCATCTCTTTTTTTTTAATTTTACCACTCCTGACTAAACTTTTTCTTGTGATCTATAGAATTCCCATGATCGAGCTCATTGGA
AGTGAGGGAGAAAAAACGCTGGTAGCATTNGGAAACGAGAGAATGATCGCGTCGCTTGGGCATCAAGCTTGTGGAGCGCTCGTTCTTTTCAACTATCCGCAGTGGATGAGGGACCTTCCC
CAGACTGGAACCGACGGCATAAACCGCCCGAATCACGTCGACATGGCCGCCCTCGAGAGAGTAAGTTCTGTTCTTGCCAGACGCTTGTTTTCCTCGATCTTATCTTTGCATCTCTGCACT
TTTTGTCCCAGTTTACCGTGATCGCGAAAGAAAAGTTGCAAGATACAATGCCTTTCGGAGAAACATGTTGATGATTCCAATCAAGAAGTGGGAGGATCTCACCGATGACAAACAAACACT
CGCCTTGCTGAGGGAGGTATACGGCGAGGACGTGGAGAAGCTCGACTTGCTCGTCGGCTTGCTGGCGGAGAAGAAGATCAAAGGCTTCGCCATTAGCGAGACGTCGTTTTTCATCTTTCT
CCTCATGGCCACCAGAGGTAAAAACTGCTAGAACCAAGTCACAGTTTTAACACATTGCATTGCTTTCCCACAGGAGGCTAGAAGCTGATCGATTCTTTACCTCAAACTTTAACGCCAAGA
GCTACACCAAGGAGGGACTGGCGTGGGTGAACAACACCGAGAGCCTCAAAGACGTCCTCCAGAGGCACCACGGCAACTTGGTTGATAAGTGGCTAAACGCACGCAGCGCATTCAGCGTGT
GGAGTGCGTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATACCAGATCGTCCATTTCGTCGACAAACACACGGCGTGGCACAAGCTCCCGCTTGTGTTCTCGCTGTTTTATCTCGACATCCGGAGGACACTCCACCAAAACTACAACTTGAAAAA
AAATCCAGTGGCGAGCACGTCAATGTCAAAAGTGGCGACTATGGATCATTCATTGGGAGAAATGCCTTTGCTCCAGCATCCGGATCCGAGGAACTTTTGGATCCACATCCCAGTGTTGTG
GCGACCAAATTTCTGTCGAGAAAGGAATCCGAATTCGCGGACACGGGCAAGCAGTTCAACATGATCGCGGCGTCCTGGATCCAGTTTATGATCCACGACTGGGTCGACCACCAGGAAGAC
ACAAAAGAGCAAGAGATTGTAGCTCCGGAATCAGTCGCAGCGCAGTGTCCCTTGAAGGAATTTCGGTTCCTCCGCACGAAAGAGGACGAAACGGGCTCGCAAGACATCCCTTTGGGGCAT
AGGAACATGAGAACATCGTGGTGGGATGGGAGTGTTCTATACGGGAGCCACGACGGTGCGCTGGCGAGGGTGCGCACTGGCAAAGATGGAAAACTTAAGATCGGCCAAAATGGCCTCCTT
GAGCGCGACGATCACGGCGTCGCCATCTCCGGCGATGTCAAGAACACCTGGGCCGGGGTTTCGATTCTCCAGGCGCTTTTCGTCAAGGAGCACAATGCCGTGTGTGACATGCTCAAGAGG
ACGCATCCGGAATTCGGGGACGAAGAGCTCTACCTTCATGCGAGATTGGTCGTCGCTGCCGTGATTGCCAAGATTCACACCATCGACTGGACTGTGGAGCTGCTCAAGACGAAAGCGCTC
GACATTGGAATGCATGCAAACTGGTATGGTTTACTGGGGAAGAGAATCAAGAGCTGGATCGGGCACACTGGATCCTCGCTGCTGAGTGGATTTATTGGAATGAAGGAGCCAATAAACCAC
GGCGTTCCTTACGCCTTGACGGAGGAGTTTACGTGCGTTTATCGCCTCCATCCTTTGCTACCAGACGACATTGTGCTGAGAGACATCACTGGCAGTGGGGAAGAGAAACAAACCAAGACT
CCTCGAGCCACTGGAAAGAGAATTCCCATGATCGAGCTCATTGGAAGTGAGGGAGAAAAAACGCTGGTAGCATTNGGAAACGAGAGAATGATCGCGTCGCTTGGGCATCAAGCTTGTGGA
GCGCTCGTTCTTTTCAACTATCCGCAGTGGATGAGGGACCTTCCCCAGACTGGAACCGACGGCATAAACCGCCCGAATCACGTCGACATGGCCGCCCTCGAGATTTACCGTGATCGCGAA
AGAAAAGTTGCAAGATACAATGCCTTTCGGAGAAACATGTTGATGATTCCAATCAAGAAGTGGGAGGATCTCACCGATGACAAACAAACACTCGCCTTGCTGAGGGAGGTATACGGCGAG
GACGTGGAGAAGCTCGACTTGCTCGTCGGCTTGCTGGCGGAGAAGAAGATCAAAGGCTTCGCCATTAGCGAGACGTCGTTTTTCATCTTTCTCCTCATGGCCACCAGGAGGCTAGAAGCT
GATCGATTCTTTACCTCAAACTTTAACGCCAAGAGCTACACCAAGGAGGGACTGGCGTGGGTGAACAACACCGAGAGCCTCAAAGACGTCCTCCAGAGGCACCACGGCAACTTGGTTGAT
AAGTGGCTAAACGCACGCAGCGCATTCAGCGTGTGGAGTGCGTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATACCAG ATCGTCCATT TCGTCGACAA ACACACGGCG TGGCACAAGC TCCCGCTTGT GTTCTCGCTG TTTTATCTCG ACATCCGGAG GACACTCCAC CAAAACTACA ACTTGAAAAA  AAATCCAGTG GCGAGCACGT CAATGTCAAA AGTGGCGACT ATGGATCATT CATTGGGAGA AATGCCTTTG CTCCAGCATC CGGATCCGAG GAACTTTTGG ATCCACATCC CAGTGTTGTG  GCGACCAAAT TTCTGTCGAG AAAGGAATCC GAATTCGCGG ACACGGGCAA GCAGTTCAAC ATGATCGCGG CGTCCTGGAT CCAGTTTATG ATCCACGACT GGGTCGACCA CCAGGAAGAC  ACAAAAGAGC AAGAGATTGT AGCTCCGGAA TCAGTCGCAG CGCAGTGTCC CTTGAAGGAA TTTCGGTTCC TCCGCACGAA AGAGGACGAA ACGGGCTCGC AAGACATCCC TTTGGGGCAT  AGGAACATGA GAACATCGTG GTGGGATGGG AGTGTTCTAT ACGGGAGCCA CGACGGTGCG CTGGCGAGGG TGCGCACTGG CAAAGATGGA AAACTTAAGA TCGGCCAAAA TGGCCTCCTT  GAGCGCGACG ATCACGGCGT CGCCATCTCC GGCGATGTCA AGAACACCTG GGCCGGGGTT TCGATTCTCC AGGCGCTTTT CGTCAAGGAG CACAATGCCG TGTGTGACAT GCTCAAGAGG  ACGCATCCGG AATTCGGGGA CGAAGAGCTC TACCTTCATG CGAGATTGGT CGTCGCTGCC GTGATTGCCA AGATTCACAC CATCGACTGG ACTGTGGAGC TGCTCAAGAC GAAAGCGCTC  GACATTGGAA TGCATGCAAA CTGGTATGGT TTACTGGGGA AGAGAATCAA GAGCTGGATC GGGCACACTG GATCCTCGCT GCTGAGTGGA TTTATTGGAA TGAAGGAGCC AATAAACCAC  GGCGTTCCTT ACGCCTTGAC GGAGGAGTTT ACGTGCGTTT ATCGCCTCCA TCCTTTGCTA CCAGACGACA TTGTGCTGAG AGACATCACT GGCAAGAGAA TGATCGCGTC GCTTGGGCAT  CAAGCTTGTG GAGCGCTCGT TCTTTTCAAC TATCCGCAGT GGATGAGGGA CCTTCCCCAG ACTGGAACCG ACGGCATAAA CCGCCCGAAT CACGTCGACA TGGCCGCCCT CGAGATTTAC  CGTGATCGCG AAAGAAAAGT TGCAAGATAC AATGCCTTTC GGAGAAACAT GTTGATGATT CCAATCAAGA AGTGGGAGGA TCTCACCGAT GACAAACAAA CACTCGCCTT GCTGAGGGAG  GTATACGGCG AGGACGTGGA GAAGCTCGAC TTGCTCGTCG GCTTGCTGGC GGAGAAGAAG ATCAAAGGCT TCGCCATTAG CGAGACGTCG TTTTTCATCT TTCTCCTCAT GGCCACCAGG  AGGCTAGAAG CTGATCGATT CTTTACCTCA AACTTTAACG CCAAGAGCTA CACCAAGGAG GGACTGGCGT GGGTGAACAA CACCGAGAGC CTCAAAGACG TCCTCCAGAG GCACCACGGC 
AACTTGGTTG ATAAGTGGCT AAACGCACGC AGCGCATTCA GCGTGTGGAG TGCGTGA 

Retrieve as FASTA