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Entry information : SbAPx07 (Sobic.006G084400.1[2.1] / Sb06g017080[1.4])
Entry ID 7416
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2014-08-04 (Messaoudi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-10-15 (Christophe Dunand)
Peroxidase information: SbAPx07 (Sobic.006G084400.1[2.1] / Sb06g017080[1.4])
Name (synonym) SbAPx07 (Sobic.006G084400.1[2.1] / Sb06g017080[1.4])
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx07
start..stop		 S start..stop
ZmAPx07 579 0 34..344 32..339
SiAPx05 568 0 1..344 1..342
BdiAPx07 553 0 46..344 46..345
TaAPx02-1B 550 0 47..344 47..348
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 46255670..46255843 172 N° 2 46255428..46255544 115 N° 3 46253583..46253703 119 N° 4 46253393..46253493 99
N° 5 46253222..46253309 86 N° 6 46252731..46252798 66 N° 7 46252554..46252640 85 N° 8 46252074..46252148 73
N° 9 46251917..46251994 76 N° 10 46251725..46251829 103 N° 11 46251527..46251547 19  
complement(join(46251527..46251547,46251725..46251829,46251917..46251994,4625207 4..46252148,46252554..46252640,46252731..46252798,46253222..46253309,46253393..4 6253493,46253583..46253703,46255428..46255544,46255670..46255843))


exon

Literature and cross-references SbAPx07 (Sobic.006G084400.1[2.1] / Sb06g017080[1.4])
DNA ref. Phytozome 12:   chromosome_6 (46255843..46251527)
EST ref. GenBank:   BE356878.1 [5' end]
Protein sequence: SbAPx07 (Sobic.006G084400.1[2.1] / Sb06g017080[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   344
PWM (Da):   %s   37156.01 Transmb domain:   %s   i7-29o
PI (pH):   %s   9.21
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAERLAASAATLRASAAAAATPSARRAARASRAFFPPSPASSARARVGLRAAPSPLPQKARAVRCAAVAAASDVAQVKAAREDIRELLRTTHCHPILVRLGWHDAGTYDKNIEEWPQRGG
ANGSLRFDVELKHGANAGLINALKLIQPIKDKYPSITYADLFQLASATAIEAGGPKIPMKYGRVDVTGPEQCPPEGKLPDAGPSSPADHLREVFYRMGLDDEIVALSGAHTLGRSRPERS
GWGKPETKYTKNGPGAPGGQSWTVEWLRFDNSYFKDIKEKRDQDLLVLPTDAALFEDPNFKVYAEKYAEDQDAFFSDYAEAHAKLSNLGAKFQPPQGFSLDD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 10 introns) and 3 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGAGCGCCTCGCCGCATCCGCCGCCACCCTCCGCGCCTCGGCCGCCGCCGCCGCCACCCCGTCCGCGCGCCGCGCGGCGCGGGCCAGCCGCGCGTTCTTCCCGCCCTCGCCGGCG
TCGTCAGCTCGCGCGCGCGTTGGCCTCCGCGCCGCGCCGTCTCCGCTCCCGCAGGTCCGTGTACCGCCTCCGTTACGTATCTGATAGGGCGGGTGCGCCTTGATCTTGAGATCGAAATGG
TGCAGCAGCAGCAGCATACAGGCTGTTGACTCGTGTTTACGTGTGTTGTGTGATCGCAGAAAAGGCGAGGGCAGTGAGGTGCGCGGCTGTGGCGGCGGCGTCTGACGTGGCTCAGGTGAA
GGCCGCGCGCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTGCCACCCCATCCTGGTGCGTACGGTGACCCTTGTTCTGCGCTTTAAATTACGTTATTCATAAACTTCGTCAATTAT
GAATTCATGATGGTGATTTAGGATTTGACTAACCCCTTTGCGAGCTTACCATCACACTGCTACATTTTTTTTAAAAAAGGAGAATTAACTCTGCTTTTCAGAAAGCAATAAGGTTTTACA
CACTGGGGATACCAGTTTACCAAAGCGAGTACAAAAAAGACAGCCAGCCACCTTGCTGAGCTACAAAGCTAAAGATAGAGTAGAAAACTTATTACAATCACACTGCTACAGTAGAAGATG
CAAGGCTTTAAATTATGATCTTACTATGCTAAGATCACTGTTGGTGAACATAGTGGTAGTGATCACTTTTAATAACTCTGTTAGTGATGTCCATTCTTATATGCCTCTGCAGCATATGGT
TTGTGAGCAGACCAAGCAGGGTGCCCGTTTTGTGCCTGTTACCATGTAATCCACTATTCACTGTTGAGCAGTGGTGGATCCAGAAAAAAAATGTTACTAGGGCCACTTCTACTAGAACAT
GGGTCATTGCTCGGTTATAAATGATTTCCCTAGTTATGCTTAGAGATTTAATTAGCGCTTGCAACAAAGTGAATGGTTTCACTTGACACCAATGAGTGTATGCTGGAGCTGGCTCTTTTG
TAGCCCATATAGGCAAGCAAATAAGATTCGACATGAGTGGTTGGTTTGTTGTGAAATGGTATGAAATGTGTGAGAAAATTTACCATTACGAATTTCAAAAGACTTAGTGGTATGCTAGGG
AAGTTTGTTTGCTCATAAGATGGTATTAACTAATTCAAAGGGAATTGGCCAGTTCAAACTTAACGATGTAGTAATGACTAACGGTACTATGTTGATGAAGGGCATCATCCAATGCACGCT
TCAGGGTTATGTCAGAGTCTATTCATTTATTATGCTGCATTTTTAATCATTTTACATTTGCATGATCATATGACTTTTTGTCTTAAGTTTTAGAGGTTAAAGATACAACAGGACCGCCAT
TTGTTGAGATAAGAGCATCTTCAGGTGTTTGGTATAATTTACTTGCTAAACTAATAGAGCTAGCAAATTAACAGAAGAATAGCAATCTTAAATTTTGTCCATCTCCAACATTCTCTTCCT
AAACGATTTCACATTGGGAACCTGAACTATTTCTAACTAACAAAACCCTTTTTGTGTGTCTTACCACTTTCTCATCTGGAATCCTTTATTTTCTTAATTTACGCATGCGTCCAATTTACT
CCTATCTCCCGAGAAAAAAGCTGGGTGGGGAGCTGATATGGAATTCTTCTCGACTGCTAGTTGGAGAGAATATTTGGCAACTTTTTACTTTTAAGGACCTCTTTTACCAAACTGTTAGAC
ACTTTTTTTCTTTTTTGCTAAAATATTAAAACAAGGAGTTGTTTTACAAAACTCCTGCTGAATGAATTTCTGTGTATTTCGATTCAGCTAACAAATGCAATGCTCCCTCCGTTCCAAATT
ATAAGTCACTTTGACTTTTTTGTACATCGATTTTGCCATGTATCTGGATATAACATATGTCTAGATACATAACAAATTTTATGTACCAGAAAAGTCAAAGCGACTTATAATTTGGAATAG
AGGGAGTATTTTCTAAGACATATATGTATGGAGTCAGGTTACCTTTGGTCTTCAGTTTCTGTATGCAAGATGACTTATTGTTATATGTTTGATTGGATGAAGGTGTACGTCTAGGATGGC
ATGATGCTGGTACATATGACAAGAATATTGAGGAGTGGCCACAACGAGGTGGAGCTAATGGAAGCTTAAGATTTGATGTTGAGTTGAAACATGGAGCCAATGCTGGTACTGTTACTCAAC
TTCTCTCAGTATCATTGTTTTATTCTTCTAAAGTGTGCTATTAGTAATTGCAATCTCTGATTGGAATTTATAAGGTGTCTGATAAATGCTCTAAAGCTTATCCAACCAATTAAGGACAAG
TACCCGAGTATCACTTATGCAGATCTATTTCAGTTGGCAAGTGCTACAGCAATTGAGGTCTGACCTTTCCCTCATTGAAGTAGGCTATGTTATTTTTAATCATATGCTACCATGTTAAAT
ACGACTCAATTTCACTCCAGGAGAAGCTGGTGGCCCAAAGATTCCGATGAAATACGGACGAGTTGATGTTACAGGACCTGAGCAGTGCCCACCTGAAGGGAAGCTTCCTGGTTAGTAGAA
TTCCATGGGCTTTGCAGTGTTCTTCATCCAGTACCAATGCCCTTTGTTAGTTTGCAGGGAAGAATTTAGATGCCAAAGATATACTTAGAGATTTCCCTTATCTGCTGGGAATATCAACAG
GCTATGTTCTGTTCCCAGGGAATCACGTCCTGGAACCGTTCCGGCCAGGAACACTTATATAATTTGTATAGGCCAGACTTCACCAGGAATCATTCCCAGCAGGAATGACCCGAACCAAAC
GAGCCCTAAATGTATTTCACATTTTTTCAGAAATCACGGGAATACCTCCGCTGCCACATTGGTGTCAGAAAACTGTTGCTGTGTAGAGGGGAATAGATGCACCAGCATATAAGCCAATTC
CACTAATCTGATGCCTGCCAAATCTCAAGTTTTATTTATCTTGTGTTTCACAGATATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTGATGAC
AAGGTGTGCAGATCGCAACACTTAACCCATTGCAGTATATGTGTCTAATTGACTTTGTTGAGCTGTTTGGAATTCTAATTATTGTGTTTGTAGGAGAAATTGTTGCCTTGTCTGGAGCAC
ATACACTTGGAAGGTCCAGGCCTGAACGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTGTATGTTCTTATCTTCTTTATGTGAACATCAGTTGTTCTTTTCTGCAGGAAGTCTGTT
TTGAGCATGATCTGTTCCATCCAATTTGTCTTGATCATGGATTGCATTGCATTTATAATTTTGCAATAAGAGGAACATTGCAATTTCTTAATGCTTTGGTACATTGCACCTGCACAGCTC
CAAGGATTGTCTTTAACCTTTCTGGGATGCTTTTGTGCAATATTTATGTACCGACTAAGTTCTGTGCATCATGTATTGTCTCTTCATCTTCTTAATTCGCTCGCTTGACTTATATATAAA
TCCTCTCCAGACCATTGAAACATTGGGACATGAATTATGTGAATATAAATTGGGCTTGTCTTGTTAATCGTGTGAGTTCATCTACCATGTCTTGTTACTCTTTACAGAAAAAAATGGTCC
TGGTGCACCTGGTGGGCAATCATGGACAGTTGAGTGGCTGAGATTTGATAACAGTTACTTCAAGGTGCGTGCCTTTTGCCACATACTACATGCTGAAAAATCGATCCGAGTTCATCATCT
CTTATCTGGTACCAATACTTCAGGAGATATCAAAGAGAAACGAGATCAGGATCTTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAACTTCAAGGTGATCTCTGATGATCA
ACTGTATGATGTTGGTATCCTATGAAATTAATCGTTGAGCTTACTGTATGGGAATCCACAACACAACCAGGTGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGTGAC
TACGCTGAGGCTCATGCTAAACTGAGCAATTTGGGTGCGAAGTTCCAACCACCGCAGGTTAGTGTTAACATTTTTGTCCTTAGTTTTCTTACAAGTACACTTTGCTCTTCATTAAAACGG
CAATTTAATTGGTTCTGGGAAGGAAACTGGCTGCTCAAAAATCATTGTTTTTTTTTCTTTTTTCTCAAACAAGTTGGGGCAACCTTATCGTCCTTTTTAATATTGATTCTGCAGGGGGAT
TCTCTTTGGATGATTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGAGCGCCTCGCCGCATCCGCCGCCACCCTCCGCGCCTCGGCCGCCGCCGCCGCCACCCCGTCCGCGCGCCGCGCGGCGCGGGCCAGCCGCGCGTTCTTCCCGCCCTCGCCGGCG
TCGTCAGCTCGCGCGCGCGTTGGCCTCCGCGCCGCGCCGTCTCCGCTCCCGCAGAAGGCGAGGGCAGTGAGGTGCGCGGCTGTGGCGGCGGCGTCTGACGTGGCTCAGGTGAAGGCCGCG
CGCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTGCCACCCCATCCTGGTACGTCTAGGATGGCATGATGCTGGTACATATGACAAGAATATTGAGGAGTGGCCACAACGAGGTGGA
GCTAATGGAAGCTTAAGATTTGATGTTGAGTTGAAACATGGAGCCAATGCTGGTCTGATAAATGCTCTAAAGCTTATCCAACCAATTAAGGACAAGTACCCGAGTATCACTTATGCAGAT
CTATTTCAGTTGGCAAGTGCTACAGCAATTGAGGAAGCTGGTGGCCCAAAGATTCCGATGAAATACGGACGAGTTGATGTTACAGGACCTGAGCAGTGCCCACCTGAAGGGAAGCTTCCT
GATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTGATGACAAGGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
CGGAGTGGCTGGGGGAAACCAGAAACAAAATATACTAAAAATGGTCCTGGTGCACCTGGTGGGCAATCATGGACAGTTGAGTGGCTGAGATTTGATAACAGTTACTTCAAGGATATCAAA
GAGAAACGAGATCAGGATCTTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAACTTCAAGGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGTGACTAC
GCTGAGGCTCATGCTAAACTGAGCAATTTGGGTGCGAAGTTCCAACCACCGCAGGGATTCTCTTTGGATGATTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCCGAGCGCC TCGCCGCATC CGCCGCCACC CTCCGCGCCT CGGCCGCCGC CGCCGCCACC CCGTCCGCGC GCCGCGCGGC GCGGGCCAGC CGCGCGTTCT TCCCGCCCTC GCCGGCGTCG  TCGGCTCGCG CGCGCGTTGG CCTCCGCGCC GCGCCGTCTC CGCTCCCGCA GAAGGCGAGG GCAGTGAGGT GCGCGGCTGT GGCGGCGGCG TCTGACGTGG CTCAGGTGAA GGCCGCGCGC  GAGGACATCA GGGAGCTTCT CAGGACGACT CACTGCCACC CCATCCTGGT ACGTCTAGGA TGGCATGATG CTGGTACATA TGACAAGAAT ATTGAGGAGT GGCCACAACG AGGTGGAGCT  AATGGAAGCT TAAGATTTGA TGTTGAGTTG AAACATGGAG CCAATGCTGG TCTGATAAAT GCTCTAAAGC TTATCCAACC AATTAAGGAC AAGTACCCGA GTATCACTTA TGCAGATCTA  TTTCAGTTGG CAAGTGCTAC AGCAATTGAG GACGGAGTGG CTGGGGGAAA CCAGAAACAA AATATACTAA AAATGGTCCT GGTGCACCTG GTGGGCAATC ATGGACAGTT GAGTGGCTGA  GATTTGATAA CAGTTACTTC AAGGATATCA AAGAGAAACG AGATCAGGAT CTTCTGGTCC TACCTACAGA TGCTGCTTTA TTTGAGGACC CAAAGTTCAA GGTCTATGCG GAGAAATATG  CAGAGGACCA AGACGCATTC TTCAGTGACT ACGCTGAAGC GCATGCTAAA CTGAGCAATT TGGGTGCGAA GTTCCAACCA CCGCAGGGAT TCTCTTTGGA TGATTAGTGC AGCAACAGAG  CTCCAGTCCG TGAAACAGGA AAATGCTGTC CTTGAACAGG ATCAAGATTC AAGAGGAAAC ATACAATTCA TTGCTCTTCT CATATCATCA TCGTACAAGA TGGACTGGTC CCCGGCTTTC 
CATGATGCTA TATATGAGTC TTCCAATTTA GCAAGATTTT GGAACCATCG AGCTTGCAAA TAAAAGAACT GACACAGTGA CACTACATAA ATAATATCAG AGCCATTGTG 

Retrieve as FASTA