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Entry information : OsPrx5556(LOC_Os04g42100 / OsPrx55-56)
Entry ID 7444
Creation 2010-07-16 (Christophe Dunand)
Last sequence changes 2010-07-16 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2022-02-28 (Christophe Dunand)
Peroxidase information: OsPrx5556(LOC_Os04g42100 / OsPrx55-56)
Name OsPrx5556(LOC_Os04g42100 / OsPrx55-56)
Class Class III peroxidase    [Orthogroup: Prx026]
Taxonomy Viridiplantae (green plants); Streptophyta; Angiospermae; Monocotyledons
Organism Oryza sativa ssp japonica cv Nipponbare    [TaxId: 39947 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value OsPrx5556
start..stop		 S start..stop
SiPrx57 522 0 155..508 19..371
ZmPrx95 512 6.75e-180 196..508 159..472
BdiPrx130 506 2.56e-177 201..508 194..496
TaPrx185-1D 499 7.89e-175 205..508 183..481
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7444' 'complement(join(24895923..24896347,24896462..24896627,24897777..24897956,24898779..24899534))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 24898779..24899534 754 N° 2 24897777..24897956 178 N° 3 24896462..24896627 164 N° 4 24895923..24896347 423
complement(join(24895923..24896347,24896462..24896627,24897777..24897956,2489877 9..24899534))


exon

Literature and cross-references OsPrx5556(LOC_Os04g42100 / OsPrx55-56)
DNA ref. GenBank:   NC_008397.1 (24899534..24895926)
EST ref. GenBank:   CI311200.1 [5' end]
Cluster/Prediction ref. UniGene:   Os.5796
Protein sequence: OsPrx5556(LOC_Os04g42100 / OsPrx55-56)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   508 (482)
PWM (Da):   %s   51450.89 (48327.3) Transmb domain:   %s   i12-34o
PI (pH):   %s   8.93 (8.66) Peptide Signal:   %s   cut: 27 range:27-508
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDQMRRQRRRECIGVLCSALFFSVLAVAVAAGSGSSSQPPSSSPAPAASSATPAARAPSQRTPPTPATPAKAASPPATNSSSSPRTPAAPAPRPPQPPPATSPAPTKPSSPPAPKPPSPP
APSPSTTPSSPPAPKPSSPPPAATPTTKPSPPPSSPPAPRPSPPLPPRTPPPPPPAAAPKPSPSPPPAPTNSTTNSSSPSTSTPVQLSPNFYAQSCPSVELAVRDVVRSASTLDSTIPGK
LLRMLFHDCFVEGCDASVMIEGSGTERTDPANLSLGGFNVIDAAKRLLEAVCPVTVSCSDILVLAARDAVTFTGGPLVPVSLGRLDGLVSLASNVRANIIDTGFSVDAMARSFSAKGLTL
DDLVTLSGGHTIGSAHCTTFGERFRVDANGSTVPADAAMNADYAGGLIRACSAVNNTVSSTAAVDCDEGSASRFDNAYFANLLAGRGLLRTDAVLVQNATTRATVEAFARSEGSFFASWA
ASFARLTSLGVRTGADGEVRRTCSRVNG*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 3 introns) and 50 ESTs. Very long PS confirmed with ESTs. Similar sequence found in indica.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCAGATGAGGCGGCAGCGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTCCTGGCAGTGGCCGTCGCCGCAGGCTCCGGCTCGTCGTCGCAGCCGCCG
TCTTCGTCTCCGGCGCCAGCTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCGACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCG
TCGTCCTCTCCACGGACACCCGCGGCGCCAGCCCCGAGGCCTCCACAGCCGCCACCGGCGACGTCGCCGGCGCCAACAAAGCCGTCGTCTCCACCCGCGCCGAAGCCACCTTCCCCTCCT
GCGCCGTCGCCGTCCACAACGCCGTCGTCTCCACCCGCGCCGAAGCCATCTTCTCCTCCTCCTGCGGCGACGCCGACCACAAAGCCGTCTCCTCCACCGTCCTCGCCACCGGCTCCGAGA
CCGTCTCCTCCTCTTCCTCCTCGGACGCCACCGCCACCGCCGCCGGCAGCGGCACCGAAACCATCTCCTTCTCCTCCTCCGGCTCCAACGAATTCCACGACGAACTCCTCCTCGCCGTCG
ACGTCCACGCCGGTCCAGCTCTCGCCAAATTTCTACGCGCAGTCCTGCCCGAGCGTGGAGCTGGCGGTGAGGGATGTCGTCAGGTCGGCCTCCACATTGGATTCCACCATCCCCGGCAAG
CTTCTCAGGATGCTCTTCCATGACTGCTTTGTTGAGGTAAGAAACTACTGATGCCATGACTGTTTATCTCAGAATCTAGTAGTATACTGCTTGCATTTGTCAAATGCGTCACATTGGCTG
CAATTTGCAACAATGGAAGTTCTTGTGCATGCAAGCAAATGGTGAAATGGCTGTCTGCAATGTAGATGGTTATATGAATCACATCCAAGTGTGTAGATCTAGCCATCAACAATTCCTGTT
CCATCACACTGGATTGGGGTATTGCCATTTGCCGTCTCAGTTTTTCATATTCTCAGAAATAACAATGGTGGGGTGGAAATATAATGCAGTAATGTGTTTTTGTTCAATTTTATGATGATA
TATAGTTCCTTCGGCCCAATTTACTAGCAGCTGAATAATAGTTATTTTCATCCGTTTTCTTAGTTTGAAATGCTGAAGACCTGAAGAACTAATCAAATGCTCATTCTACTAGTTAGTTTA
GGATATTCCTTTTCTCACCCTAGTTTTCCCCAGAATAGTTATGACATGTGTGGCACTAATTGCATCGGCTAATAATCTGGCATTATTCGAATATAATGTATATCTTGTCGATTGAATGGT
CCAGTCTAGAATAGTTATTGATCACTAAGCTATGTGGTGGCTAAAATTAAGACCCTAATCCATTATGCACGCTTGGTATAACCAAACATAATGTAGTTTTCCACAGCTTGCACATTGTCA
CTGCCACAATTATGGGAACAATTGTATTTGTCTTGCATTTGCATCTCATCGGGTTTAAGAATTGTGAAAACATCCACGCTTGCACAATAACAGAAAGTGAGAAAGTCATTCTTAGAGTAC
ATTTTTTCTTGGTCTCAGGGGGATGTGATGCATCAGTGATGATTGAAGGTAGCGGCACGGAGAGGACCGATCCTGCAAACCTCTCACTTGGTGGGTTCAATGTCATAGATGCTGCCAAGA
GGCTGCTTGAAGCCGTGTGCCCTGTAACTGTTTCCTGCAGCGACATTTTAGTCCTTGCCGCAAGAGATGCTGTTACATTTGTAAGTATGATGGCACTATGTGATTTCTCTTTTCTAGTTG
CTACAATCCACTCAAAGGTAAATGTGCCAAATATTTAAATTGTTGCCTGAGATGAATTTTCCTAGAAATGTTGCTACTAAATATAGTTAAGCAGATGTAGTACTCTTCATAAGCATAGGA
CATCAGAAATAATCCACATTAATGCTGCAACAGTTAGATCTTTAATCATCCAATGAATTGAGTGCTCCTGGTCCATGCATACGTTACACGACTATACCTTGGAAAATAATTAGAACTACT
ATGGTTACACCCAAATAAAATCAGACAGGTAGACCATCATGAACTTAACTAAGTGAACACAATTCCGTTTCCATTAGTTTCATGATTGTCATCTTATGTCGTTGGACCACAATATTTTAT
GTGCGTAATTCTGTGGGGGACATGATTAATGGTCCTAAGGGGATTGATGAAATGAGCTAATGAAGGGGGGCACAACTGGAATAGTTTTTCATTGTTTAGTAGCTTCTTCTTTCCTCTCTC
TTTCTCTCTTTCACTGTTTTGGTGATCTTGTAAATACTTTTTTTCTCCCCTGCTTAATATAACACCAGCTTTGCTGGCTTCGGTTTTTTTATAAAAAAAACAACTGGAATAGTGAAACTT
AAGAACAGATATGCTTTGAAACTACATTCCTCTGTATCTAGAAATACAGAGTTTGCAGTAACATTCACACTCACATTCACCTTCACCATTTCACCCACATCATATAGATGTTGATTCGGC
ATAGACTTGGTAACAAAAAAGAAATACAGCAAGACTTATAATATGGTTGTTTCTACGGAAATGTTTCTCTAAACTTCAACACCCTCGTTTTCCATTAGCATATGCTTCCCAAACTGCTAA
ACCGTGTTTTTTTTTTGCAAAAACTTTTTATATAAAAGTTTCTTTAAAAATTCAAATGAACCCTTTTTCAATTTTATATTAATTAATAATTAATTAATCTTGTGTTAATTGCTTGCTCCG
GTTTCTGTGCCACTTAAAAGCTCAATTTTTAGTCTTGGCACAAAATCCTATTGGCATGTTAGGGCAGATTGGTTTACAAAGCAGATAAACTACCAATGTAAAATGAGTGACATTCATGAA
CTAACATGCATTCACCTGCTGCAAACCAGACACCGGAGGACCGTTGGTGCCAGTCTCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACAC
CGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGTACACACACACACGCTCTTGAATGCTGGAGGATCAACTGCGA
TTTTCACTTTTCACCTGGTCTCACCGTGAGCACACGGCTGTCGATCGCCGGCGTGGCGCACTGGCGCGCAGGGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGG
TTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAACGCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCG
GTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCCAACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCC
ACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCGGCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGC
TCCCGCGTCAACGGCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCAGATGAGGCGGCAGCGGCGGCGGGAGTGCATTGGTGTTCTTTGCTCGGCGCTGTTTTTCTCTGTCCTGGCAGTGGCCGTCGCCGCAGGCTCCGGCTCGTCGTCGCAGCCGCCG
TCTTCGTCTCCGGCGCCAGCTGCTAGCTCAGCAACGCCGGCTGCGAGGGCGCCTTCTCAACGGACGCCGCCGACGCCAGCAACGCCGGCAAAGGCGGCATCCCCACCGGCGACGAACTCG
TCGTCCTCTCCACGGACACCCGCGGCGCCAGCCCCGAGGCCTCCACAGCCGCCACCGGCGACGTCGCCGGCGCCAACAAAGCCGTCGTCTCCACCCGCGCCGAAGCCACCTTCCCCTCCT
GCGCCGTCGCCGTCCACAACGCCGTCGTCTCCACCCGCGCCGAAGCCATCTTCTCCTCCTCCTGCGGCGACGCCGACCACAAAGCCGTCTCCTCCACCGTCCTCGCCACCGGCTCCGAGA
CCGTCTCCTCCTCTTCCTCCTCGGACGCCACCGCCACCGCCGCCGGCAGCGGCACCGAAACCATCTCCTTCTCCTCCTCCGGCTCCAACGAATTCCACGACGAACTCCTCCTCGCCGTCG
ACGTCCACGCCGGTCCAGCTCTCGCCAAATTTCTACGCGCAGTCCTGCCCGAGCGTGGAGCTGGCGGTGAGGGATGTCGTCAGGTCGGCCTCCACATTGGATTCCACCATCCCCGGCAAG
CTTCTCAGGATGCTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCATCAGTGATGATTGAAGGTAGCGGCACGGAGAGGACCGATCCTGCAAACCTCTCACTTGGTGGGTTCAATGTC
ATAGATGCTGCCAAGAGGCTGCTTGAAGCCGTGTGCCCTGTAACTGTTTCCTGCAGCGACATTTTAGTCCTTGCCGCAAGAGATGCTGTTACATTTACCGGAGGACCGTTGGTGCCAGTC
TCTCTCGGGAGGCTCGACGGCCTGGTCTCGCTGGCCTCCAACGTCAGGGCGAACATCATCGACACCGGCTTCTCCGTCGACGCCATGGCGAGGAGCTTCTCCGCCAAAGGGCTCACCCTG
GACGACCTCGTCACCCTCTCAGGGGGGCACACCATCGGGTCGGCGCACTGCACGACGTTCGGGGAGCGGTTCCGGGTGGACGCGAACGGGAGCACGGTGCCCGCGGACGCGGCGATGAAC
GCGGACTACGCCGGGGGGCTGATCAGGGCGTGCTCGGCGGTGAACAACACGGTGTCGTCGACGGCGGCGGTGGACTGCGACGAGGGGTCGGCGTCGCGGTTCGACAACGCCTACTTCGCC
AACCTGCTCGCCGGGCGCGGGCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGCGGGCCACGGTGGAGGCGTTCGCGCGGAGCGAGGGGAGCTTCTTCGCCAGCTGGGCG
GCCTCGTTCGCCAGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGA

Retrieve as FASTA