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Entry information : AlyDiOx01
Entry ID 7464
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyDiOx01
Name AlyDiOx01
Class Alpha-dioxygenase    [Orthogroup: DiOx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyDiOx01
start..stop		 S start..stop
AtDiOx01 1217 0 1..639 1..639
NoffDiOx01-1B 1203 0 1..639 1..639
TsDiOx01 1177 0 1..639 1..639
ThasDiOx01 1080 0 1..639 1..639
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 249841..249948 106 N° 2 250256..250519 262 N° 3 250932..251081 148 N° 4 251171..251304 132
N° 5 251531..251747 215 N° 6 251838..251983 144 N° 7 252081..252308 226 N° 8 252405..252607 201
N° 9 252685..252928 242 N° 10 253053..253278 224  
join(249841..249948,250256..250519,250932..251081,251171..251304,251531..251747, 251838..251983,252081..252308,252405..252607,252685..252928,253053..253278)


exon

Literature and cross-references AlyDiOx01
DNA ref. Phytozome 12:   scaffold_3 (249841..253278)
Protein sequence: AlyDiOx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   639 (309)
PWM (Da):   %s   72948.22 (34417.1)  
PI (pH):   %s   6.06 (5.24) Peptide Signal:   %s   cut: 21 range:21-329
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKAITSLISSVLLKFIHEDFHEIYSRMSLLDRFLLLIVHAVDKMVPWHKLPVFLGLAYLEVRRHLHQEYNLINVGQSPVGTRFDPANYPYRTADGKFNDPFNEGVGSQNSFFGRNCPPVDQITKLLRPDPMVVASKLLGRRKFIDTGKQFNMIAAS
WIQFMIHDWIDHLEDTRQIELVAPKEVANKCPLSSFSFFKTKEVPTGFFEIKTGSLNIRTPWWDSSVIYGSNSKILDRVRTYKDGKLKISEETGLLLHDEDGLAISGDIRNSWVGVSALQ
ALFIKEHNAVCDALDEDKDLEDEDLYRYARLVTSAVIAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGGVVGMKKPQNHGVPYSLTEDFTSVYRMHSLLPDHLQ
MRDIDDVPGANKSLPLIKEISMGNLIGRKGEETMSQIGFTKLMVSMGHQASGALELMNYPMWLRDIVPQDPNGQDRPDHVDLAALIYRDRERNVPRYNDFRRAMFMIPITKWEDLTDDEE
AIKVLDDVYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFIIMATRRLEADRFFTSDFNETIYSKKGLEWVNTTESLKDVFDRHYPEMTDKWMNSESAFSVWDSPPVTKNPIPLYLRIP
S

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 9 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAGCAATTACTTCTCTAATCTCTTCTGTTTTGCTTAAATTTATCCACGAAGACTTTCATGAGATTTACTCAAGAATGTCCCTCCTCGATCGTTTTCTACTTCTTTTGTAAGTAATT
GAACTTTCATATATATATATATATATGCACGTAGAAACACATCCACGACTTTTTTTTAATTTGGAAATGAATGAATTTAAATTGCTATGGATGGGTTTTCGTTTCTTTAATTCCACAAAA
CACTTTGCTATTAGTCTTAAATTTCAAAAGACTAATATTGGAAATTCGAGATGTTTTTTAATGTAACATATCACATATGTTCACGAGTCCTGGTGACACATTAATTTTGGATGATCTATA
ATGTTTATTTGATATATTGGAAAAATATTTATGATCCGATGTAAATGCATGGTGCAGATCGTGCATGCAGTGGATAAGATGGTTCCATGGCATAAGCTTCCGGTTTTCTTGGGTTTAGCC
TATCTTGAAGTACGTAGACATCTTCACCAAGAATACAATCTTATCAACGTGGGTCAAAGTCCGGTTGGGACCCGGTTTGATCCTGCTAATTATCCGTACCGGACTGCTGACGGAAAATTC
AATGATCCGTTTAATGAAGGCGTCGGCAGTCAAAATAGCTTCTTCGGAAGAAATTGTCCCCCCGTCGATCAGATAACAAAGAGGTAAATTCACATACATATATGTGTATTAAGGTTTCGA
ATTTGATTTGATTTTAATCCAGATATTTGGATTTTAGATTCATTAATTAGATGATCAAAGTATATACTAATTAAACTTTATTAATAAAACGTATATAAACTAAACTGAATAATTTATCAA
ATCATTTTTGATTTGGAGAAAAGAAAATACTTTACATATTTTGTTTCTAGTCTTGTATGAAAAATGAATTGCAAACCAATTAAAATTGGGTAATGAAGGAATTTACGTTATGCTAATATT
TTCGATTTGATAGCTAATATAAAAGAATAATTTATTGAGAAGTTTGTATATTTAAACACGTTTACCCATTTTTAGCAAGTTTTGAAATATTTTAAAACAAAAGAAATTAAGCCTGTTATA
ATGATTTTTTTGAAGTTACTGAGGCCAGACCCCATGGTGGTGGCGTCAAAACTATTAGGAAGGAGAAAGTTTATTGACACAGGAAAACAATTCAATATGATCGCAGCTTCTTGGATTCAA
TTCATGATCCATGATTGGATTGATCATCTTGAAGATACTCGCCAAAAGTAAATTTCAATTCACACACTTATAATTAATATGCTATATAACGAAACAATTAAGTTTGGTTTATTCCGGTTA
AATATTGGTAACTTAGATCGAGCTTGTGGCTCCGAAAGAAGTAGCGAACAAGTGTCCCTTAAGCTCCTTTAGCTTCTTCAAGACAAAGGAAGTCCCTACCGGTTTCTTCGAAATCAAGAC
TGGTTCGCTAAATATCCGTACACCTTGGTGTGGTAATTATTTTATTCTAGACCTATCATATAAAATCATTAAAATGTGTTGCTATACACGTTTTTTTCTGGCTTAAACATTTTTGTGGGA
TCGGTTAAGATCAAAAAAAAAAAAAATTCTTGTGTGGGGATATATGGACGACGTAAACACACATATTCATGCATACAAATCATACATTTAATTATATATGATGACTACAAATAATTCAAC
GAAATATTAATAAATTAGGGATTCGAGCGTCATCTATGGAAGCAACTCGAAAATATTGGATAGAGTAAGAACTTACAAAGATGGGAAACTGAAGATATCGGAGGAGACGGGTCTCCTTCT
CCATGACGAAGACGGGTTAGCTATCTCCGGCGATATTCGTAACAGTTGGGTTGGCGTCTCCGCTTTGCAAGCTCTCTTCATCAAAGAGCACAACGCTGTATGCGACGCCCTCAAGAGGTT
CAATATTTGTTTCTCTTTTTTTAGAAAATGTAAATTACGAAATTTGAATAATTTTTGTGCCAGTTTGAAAATTTTTATTCAAAATAGGATGAGGATAAGGATTTGGAAGACGAAGATTTG
TACCGGTACGCGAGGCTAGTGACTTCAGCGGTGATAGCCAAGATTCACACCATAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGAGAGCAAATTGTGGTCAA
TACCACATTTTTGTTCTTTTCCATCTATGATTTTCACGTTACGTATCACATATGTTGCAATATCTAACACTTTTAATATTTTGTGATTTTAGGTACGGACTACTAGGAAAGAAGTTTAAA
GATTCTTTCGGACATGCAGGAAGTTCGATCTTGGGAGGTGTCGTGGGAATGAAGAAACCGCAAAATCATGGGGTCCCTTACTCTCTAACCGAGGATTTCACTAGCGTCTATCGAATGCAC
TCTCTCTTACCTGATCATCTCCAGATGCGTGACATTGATGATGTACCAGGAGCTAATAAATCACTACCGTTGATTAAAGAGAGTATAACTCTATACTTTATACATCTCTCTCTCTCTCCT
ATTTTGAAGTTTTCAATTTTATAAAAGTTTTAGTGTTTTATTATTTCTTTGGATTTAGGATTTCTATGGGAAATTTGATTGGTCGTAAGGGAGAAGAAACCATGTCTCAGATTGGATTCA
CTAAGCTAATGGTCTCAATGGGTCACCAAGCAAGTGGTGCCCTTGAACTGATGAATTATCCAATGTGGTTAAGAGACATTGTTCCCCAAGACCCCAACGGCCAAGATCGTCCGGACCACG
TCGACTTAGCTGCTTTAGAGAGAGTAAGTCAATGTGATCCCAGCCGTTCATTGTGGTTTGACTTGATTCTCACGTGAATTCGGTTTGTCGATTATTTTAGTCTATAGGGACAGGGAGAGG
AACGTCCCACGGTACAACGATTTCAGGAGAGCCATGTTTATGATTCCGATAACCAAGTGGGAAGATCTAACGGATGATGAGGAAGCTATTAAAGTGTTGGATGACGTGTACGATGGTGAT
GTGGAGGAGCTTGATCTTCTCGTGGGACTTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCATCATCATGGCCACAAGAGGTATATATTTGGTT
CTTATAAATGAATTAAAGATTTAATATATAAAACCAAGTTTTCTTGAAGATATTATAGTAAACTAGAAACTAAAAGCTTAATTAATCTAATGCTAATTTTAACATTTCAGGCGATTAGAA
GCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTATTCGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGATGTGTTTGATCGTCATTATCCTGAAATGACT
GATAAATGGATGAACTCTGAAAGTGCATTTTCGGTATGGGATTCACCTCCAGTTACCAAAAATCCAATCCCTCTCTATCTCCGAATTCCTTCTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAGCAATTACTTCTCTAATCTCTTCTGTTTTGCTTAAATTTATCCACGAAGACTTTCATGAGATTTACTCAAGAATGTCCCTCCTCGATCGTTTTCTACTTCTTATCGTGCATGCA
GTGGATAAGATGGTTCCATGGCATAAGCTTCCGGTTTTCTTGGGTTTAGCCTATCTTGAAGTACGTAGACATCTTCACCAAGAATACAATCTTATCAACGTGGGTCAAAGTCCGGTTGGG
ACCCGGTTTGATCCTGCTAATTATCCGTACCGGACTGCTGACGGAAAATTCAATGATCCGTTTAATGAAGGCGTCGGCAGTCAAAATAGCTTCTTCGGAAGAAATTGTCCCCCCGTCGAT
CAGATAACAAAGTTACTGAGGCCAGACCCCATGGTGGTGGCGTCAAAACTATTAGGAAGGAGAAAGTTTATTGACACAGGAAAACAATTCAATATGATCGCAGCTTCTTGGATTCAATTC
ATGATCCATGATTGGATTGATCATCTTGAAGATACTCGCCAAATCGAGCTTGTGGCTCCGAAAGAAGTAGCGAACAAGTGTCCCTTAAGCTCCTTTAGCTTCTTCAAGACAAAGGAAGTC
CCTACCGGTTTCTTCGAAATCAAGACTGGTTCGCTAAATATCCGTACACCTTGGTGGGATTCGAGCGTCATCTATGGAAGCAACTCGAAAATATTGGATAGAGTAAGAACTTACAAAGAT
GGGAAACTGAAGATATCGGAGGAGACGGGTCTCCTTCTCCATGACGAAGACGGGTTAGCTATCTCCGGCGATATTCGTAACAGTTGGGTTGGCGTCTCCGCTTTGCAAGCTCTCTTCATC
AAAGAGCACAACGCTGTATGCGACGCCCTCAAGGATGAGGATAAGGATTTGGAAGACGAAGATTTGTACCGGTACGCGAGGCTAGTGACTTCAGCGGTGATAGCCAAGATTCACACCATA
GATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGAGAGCAAATTGGTACGGACTACTAGGAAAGAAGTTTAAAGATTCTTTCGGACATGCAGGAAGTTCGATCTTG
GGAGGTGTCGTGGGAATGAAGAAACCGCAAAATCATGGGGTCCCTTACTCTCTAACCGAGGATTTCACTAGCGTCTATCGAATGCACTCTCTCTTACCTGATCATCTCCAGATGCGTGAC
ATTGATGATGTACCAGGAGCTAATAAATCACTACCGTTGATTAAAGAGATTTCTATGGGAAATTTGATTGGTCGTAAGGGAGAAGAAACCATGTCTCAGATTGGATTCACTAAGCTAATG
GTCTCAATGGGTCACCAAGCAAGTGGTGCCCTTGAACTGATGAATTATCCAATGTGGTTAAGAGACATTGTTCCCCAAGACCCCAACGGCCAAGATCGTCCGGACCACGTCGACTTAGCT
GCTTTAGAGATCTATAGGGACAGGGAGAGGAACGTCCCACGGTACAACGATTTCAGGAGAGCCATGTTTATGATTCCGATAACCAAGTGGGAAGATCTAACGGATGATGAGGAAGCTATT
AAAGTGTTGGATGACGTGTACGATGGTGATGTGGAGGAGCTTGATCTTCTCGTGGGACTTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCATC
ATCATGGCCACAAGGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTATTCGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGATGTGTTT
GATCGTCATTATCCTGAAATGACTGATAAATGGATGAACTCTGAAAGTGCATTTTCGGTATGGGATTCACCTCCAGTTACCAAAAATCCAATCCCTCTCTATCTCCGAATTCCTTCTTAG

Retrieve as FASTA