1. Browse the Database
  2. View Redoxidase
Entry information : AlyPrx54
Entry ID 7504
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx54
Name AlyPrx54
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx54
start..stop		 S start..stop
AtPrx54 681 0 1..357 1..358
AruPrx54 659 0 1..357 1..358
BstrPrx43 657 0 1..357 1..358
NoffPrx54-1A 645 0 1..357 1..360
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7504' 'complement(join(2549212..2549696,2549784..2549946,2550156..2550347,2550452..2550685))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2550452..2550685 232 N° 2 2550156..2550347 190 N° 3 2549784..2549946 161 N° 4 2549212..2549696 483
complement(join(2549212..2549696,2549784..2549946,2550156..2550347,2550452..2550 685))


exon

Literature and cross-references AlyPrx54
DNA ref. Phytozome 12:   scaffold_6 (2550685..2549212)
Protein sequence: AlyPrx54
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (326)
PWM (Da):   %s   37085.16 (33907.6) Transmb domain:   %s   i13-35o
PI (pH):   %s   4.36 (4.34) Peptide Signal:   %s   cut: 32 range:32-357
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVTRSSSTCDGFFIISLIVIVSSLFGTSSAQLNATFYSGTCPNA
SAIVRSTIQQALQSDARIGASLIRLHFHDCFVNGCDGSLLLDDTGSTQSEKNAPANANSTRGFNVVDNIKTALENACPGIVSCSDVLALASEASVSLAGGPSWAVLLGRRDGLTANLSGANSLPSPFEGLNNITSKFVAVGLNTTDVVALSGA
HTFGRGQCVTFNNRLFNFNGTGNPDPTLNSTLLSSLQQLCPQNGSASGITNLDLSTPDAFDKNYFTNLQSNNGLLQSDQELFSNSGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPL
TGNSGEIRQDCKVVNGQSSATEAEDIQLQSDGPVSVADM

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 3 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGTAACAAGATCTTCTTCTACTTGTGATGGTTTCTTCATCATCAGCCTTATTGTTATCGTTTCTTCATTGTTTGGGACATCATCTGCGCAGTTAAACGCAACGTTTTACTCTGGG
ACGTGCCCTAACGCCTCTGCCATCGTACGCAGCACTATTCAGCAAGCTCTTCAATCCGATGCAAGAATCGGAGCAAGCCTAATCCGCCTTCATTTTCACGACTGCTTTGTTAATGTATAA
GAAGCTCTTTAAATAAGCTTCTTGATTTTTACTTTATCATTAAGCCTTCTAAATTTTGTTACACTAAACCGCTACTTTGCTTCTTTACATTGGAAAAGGGGGTTGCGACGGGTCGCTCTT
GCTTGACGATACTGGAAGCACCCAGAGCGAAAAGAACGCTCCTGCCAACGCAAACTCAACTAGAGGATTCAATGTTGTCGATAATATCAAGACTGCCCTCGAGAATGCTTGTCCTGGCAT
TGTCTCTTGCTCTGACGTTTTAGCTCTTGCATCAGAGGCCTCTGTGTCTTTGGTAATAACACCACTTTCTTCATAAAACATATCAAACACAAAATTACGATACCTAAAGGCCGATCCTGG
GCTTGGCGGACCTGTCCACGGGCCTAATCACAGGCCGGGCCGGGCCGGGCCGGATAAAAAATATCCCTAATATTACCTAAAAAGCATGTTTTTAATATTCCTAATCTTGATAACATGTAC
ATGTTTAATCATCTTCTTCAGGCGCAGGAGGGCCTTCATGGGCTGTGTTATTAGGAAGAAGAGATGGTCTCACTGCAAACTTGTCTGGAGCCAATTCTCTTCCCTCTCCCTTCGAAGGCC
TTAACAACATCACATCTAAATTTGTAGCTGTCGGGCTAAATACAACCGATGTAGTAGCCTTGTCTGGTAAATCATCGACATGTTCAATAACTTGCAGCTTAATTCAAACAAAACCCTAAT
TAGGTCATTTCTGTTGTGGTTCAATATGCATAGGAGAGCGCATACGTTTGGGCGTGGTCAATGTGTAACGTTCAACAATAGACTATTCAACTTCAACGGGACAGGAAACCCCGACCCGAC
TCTGAACTCAACACTTCTCAGCAGCCTTCAACAGCTATGTCCTCAAAACGGCAGCGCATCAGGGATCACCAATCTCGATCTGAGCACACCTGATGCGTTCGATAAAAATTACTTCACAAA
CCTTCAGAGTAACAATGGGCTTCTTCAGTCAGACCAGGAACTGTTCTCCAACAGCGGTTCAGCCACCGTCCCGATTGTTAATTCCTTTGCAAGTAACCAAACTCTGTTTTTTGAGGCGTT
TGTTCAGTCTATGATCAAGATGGGGAACATAAGTCCATTGACTGGGAATAGTGGAGAGATTAGACAAGATTGTAAGGTGGTCAATGGACAGTCATCAGCCACTGAAGCAGAGGACATTCA
GTTACAATCTGACGGACCAGTGAGTGTAGCAGATATGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGTAACAAGATCTTCTTCTACTTGTGATGGTTTCTTCATCATCAGCCTTATTGTTATCGTTTCTTCATTGTTTGGGACATCATCTGCGCAGTTAAACGCAACGTTTTACTCTGGG
ACGTGCCCTAACGCCTCTGCCATCGTACGCAGCACTATTCAGCAAGCTCTTCAATCCGATGCAAGAATCGGAGCAAGCCTAATCCGCCTTCATTTTCACGACTGCTTTGTTAATGGTTGC
GACGGGTCGCTCTTGCTTGACGATACTGGAAGCACCCAGAGCGAAAAGAACGCTCCTGCCAACGCAAACTCAACTAGAGGATTCAATGTTGTCGATAATATCAAGACTGCCCTCGAGAAT
GCTTGTCCTGGCATTGTCTCTTGCTCTGACGTTTTAGCTCTTGCATCAGAGGCCTCTGTGTCTTTGGCAGGAGGGCCTTCATGGGCTGTGTTATTAGGAAGAAGAGATGGTCTCACTGCA
AACTTGTCTGGAGCCAATTCTCTTCCCTCTCCCTTCGAAGGCCTTAACAACATCACATCTAAATTTGTAGCTGTCGGGCTAAATACAACCGATGTAGTAGCCTTGTCTGGAGCGCATACG
TTTGGGCGTGGTCAATGTGTAACGTTCAACAATAGACTATTCAACTTCAACGGGACAGGAAACCCCGACCCGACTCTGAACTCAACACTTCTCAGCAGCCTTCAACAGCTATGTCCTCAA
AACGGCAGCGCATCAGGGATCACCAATCTCGATCTGAGCACACCTGATGCGTTCGATAAAAATTACTTCACAAACCTTCAGAGTAACAATGGGCTTCTTCAGTCAGACCAGGAACTGTTC
TCCAACAGCGGTTCAGCCACCGTCCCGATTGTTAATTCCTTTGCAAGTAACCAAACTCTGTTTTTTGAGGCGTTTGTTCAGTCTATGATCAAGATGGGGAACATAAGTCCATTGACTGGG
AATAGTGGAGAGATTAGACAAGATTGTAAGGTGGTCAATGGACAGTCATCAGCCACTGAAGCAGAGGACATTCAGTTACAATCTGACGGACCAGTGAGTGTAGCAGATATGTAA

Retrieve as FASTA