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Entry information : AlyAPx01
Entry ID 7516
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyAPx01
Name AlyAPx01
Class Ascorbate peroxidase    [Orthogroup: APx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyAPx01
start..stop		 S start..stop
AhalAPx02 517 0 1..250 1..250
AtAPx01 514 0 1..250 1..250
CagraAPx01 506 0 1..250 1..250
BstrAPx01 506 0 1..250 1..250
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7516' 'join(2909897..2910015,2910112..2910286,2910425..2910490,2910705..2910839,2910928..2911007,2911081..2911183,2911263..2911321,2911404..2911419)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2909897..2910015 117 N° 2 2910112..2910286 173 N° 3 2910425..2910490 64 N° 4 2910705..2910839 133
N° 5 2910928..2911007 78 N° 6 2911081..2911183 101 N° 7 2911263..2911321 57 N° 8 2911404..2911419 14
join(2909897..2910015,2910112..2910286,2910425..2910490,2910705..2910839,2910928 ..2911007,2911081..2911183,2911263..2911321,2911404..2911419)


exon

Literature and cross-references AlyAPx01
DNA ref. Phytozome 12:   scaffold_1 (2909897..2911419)
Protein sequence: AlyAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   250 (310)
PWM (Da):   %s   27472.76 (35118.9)  
PI (pH):   %s   6.24 (8.38) Peptide Signal:   %s   cut: 27 range:27-336
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTKNYPTVSEDYKKAIEKCKRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGLHIALRLLDPIREQFPTISFADFHLAGVVAVEVTGGPEIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALS
GAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYADEDAFFADYAEAHMKLSELGFADA

Retrieve as FASTA  
Remarks complete sequence from genomic (chromo 1, 7 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACGAAGAACTACCCAACCGTGAGCGAGGATTACAAGAAAGCTATTGAGAAGTGCAAGCGGAAGCTCAGAGGTTTGATCGCTGAGAAGAACTGTGCACCCATCATGGTCCGACTCGCG
CGTAAGTAACTAACTATATCAGCGTGTGGTTGGTTTCTTCTAAAGTATTTAGGATGTGCAACACTTATCATGGTTGATTTGTTTGGCTAAACTGCAGGTGGCATTCTGCTGGAACTTTCG
ATTGTCAATCGAGGACTGGAGGTCCATTCGGAACAATGAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTCTCCACATTGCTCTTAGGTTGTTGGACCCCATCAGGGAGCAAT
TCCCTACCATCTCTTTTGCTGATTTCCATCAGAGGTACATGATCTTAGATTTTAAAAAGAACTATTTGGTTAACTGTCATCACTTTAGAAAAGAAAACAACCGCATCGTTGATTACTCCT
GTGTTTGGAATCTTACTCATGATGACCTTTTTCTGTGAAATTGATCATTCAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCCACCCTGGAAGAGAGAG
GTTAGTCATTGCTGTAGATTTGTTTGCCGCCTCTAAGGTTACCATGTACTCAATTTGGTCGAGAGAATGTGTTTTGCTTTCTTTGTAGAGATGGCTGATTGATAATGTAGCTGTTCTCTC
AATACTTGTAATACTGAAACACGAGATAGAATTTGAAGGAGGAAACACCGTGGGACTTGATTGTTCGTTTCTAACATGCATATCTTGCTTTCAGGACAAGCCCCAGCCACCTCCTGAGGG
TCGTCTTCCTGATGCTACCAAGGGTTGTGATCACTTGAGAGACGTCTTTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGGTGCCCACACTCTGTGGTTTGATTC
TCTCCAACTGCTTAAACACTTAATTTTTTGCCCCAATCTTACAAATTTTGATGAATACTTGCAAAATATGAAACCGCAGGGAAGATGCCACAAGGATAGGTCTGGCTTCGAAGGTGCCTG
GACTTCAAACCCTCTAATCTTCGACAACTCTTACTTCAAAAGTGAGTATCCCAAGTTCCCTTGTAGGAAGATTCAATGGCTGATATGGTTATTAATAAAATTATATATGATCAGGGAACT
CTTGAGCGGAGAGAAGGAAGGCCTTCTTCAGCTTGTCTCTGACAAGGCGCTATTGGATGACCCTGTTTTCCGTCCTTTAGTCGAGAAATACGCTGCTCTGTATGCATCCTTTCTCTTTTC
CCTGTTCTTCACTTGGTAGAGAGAGAGAGCTCATGATTTCTTGTGACATTGTGAACAGGATGAAGATGCCTTTTTCGCTGATTATGCCGAGGCCCACATGAAGCTTTCTGAGCTTGGGGG
TACTTCTCTTGAATCTATTAATCATTCGAAAGTAAATATTAATGTAGTCGTGTGATTTGAATTTGTATCTGTTGATTGCAGGTTTGCTGATGCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACGAAGAACTACCCAACCGTGAGCGAGGATTACAAGAAAGCTATTGAGAAGTGCAAGCGGAAGCTCAGAGGTTTGATCGCTGAGAAGAACTGTGCACCCATCATGGTCCGACTCGCG
TGGCATTCTGCTGGAACTTTCGATTGTCAATCGAGGACTGGAGGTCCATTCGGAACAATGAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTCTCCACATTGCTCTTAGGTTG
TTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTGCTGATTTCCATCAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCCACCCTGGAAGAGAG
GACAAGCCCCAGCCACCTCCTGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGATCACTTGAGAGACGTCTTTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCT
GGTGCCCACACTCTGGGAAGATGCCACAAGGATAGGTCTGGCTTCGAAGGTGCCTGGACTTCAAACCCTCTAATCTTCGACAACTCTTACTTCAAGGAACTCTTGAGCGGAGAGAAGGAA
GGCCTTCTTCAGCTTGTCTCTGACAAGGCGCTATTGGATGACCCTGTTTTCCGTCCTTTAGTCGAGAAATACGCTGCTGATGAAGATGCCTTTTTCGCTGATTATGCCGAGGCCCACATG
AAGCTTTCTGAGCTTGGGTTTGCTGATGCTTAA

Retrieve as FASTA