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Entry information : AlyAPx05
Entry ID 7525
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-08-12 (Christophe Dunand)
Peroxidase information: AlyAPx05
Name AlyAPx05
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyAPx05
start..stop		 S start..stop
NoffAPx05-1A 610 0 1..366 1..362
BstrAPx05 610 0 1..370 1..367
CagraAPx05 610 0 1..370 1..373
BnAPx04-1Aa_other 602 0 1..370 1..354
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 18534569..18534793 223 N° 2 18534868..18535014 145 N° 3 18535095..18535215 119 N° 4 18535299..18535399 99
N° 5 18535471..18535558 86 N° 6 18535662..18535729 66 N° 7 18535814..18535900 85 N° 8 18536007..18536081 73
N° 9 18536176..18536253 76 N° 10 18536339..18536443 103 N° 11 18536688..18536703 14  
join(18534569..18534793,18534868..18535014,18535095..18535215,18535299..18535399 ,18535471..18535558,18535662..18535729,18535814..18535900,18536007..18536081,185 36176..18536253,18536339..18536443,18536688..18536703)


exon

Literature and cross-references AlyAPx05
DNA ref. Phytozome 12:   scaffold_6 (18534569..18536703)
Protein sequence: AlyAPx05
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   370 (293)
PWM (Da):   %s   40459.62 (30821.1) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.95 (6.10) Peptide Signal:   %s   cut: 27 range:27-319
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTERVFLTLNGTLLSRPKTTATTMSSSLRSTTAASRLLRSSSSTRSTLTLSAFTSLSFARSLVSSPLLSSSPLDFQKKYRVSSVNRSFNSTAATTKCSASDPDQLKNAREDIKELLNTKF
CHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFEIELKHAANAGLVNALNLIKDIKEKYSGITYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEEGRLPDAGPPSPANHLR
EVFYRMGLDDKDIVALSGAHTLGRSRPERSGWGKPETKYTKEGPGAPGGQSWTPEWLKFDNSYFKEIKEKRDEDLLVLPTDAAIFEDSSFKVYAEKYAADQDAFFKDYAVAHAKLSNLGA
KFDPPEGIVI

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 10 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACAGAGCGTGTGTTTCTCACACTCAACGGAACCCTCCTATCTCGTCCCAAAACCACCGCAACAACAATGTCTTCTTCTCTCCGTTCTACCACCGCCGCTTCTCGTCTCCTCCGCTCC
TCCTCCTCCACCAGATCCACTCTCACTCTCTCCGCTTTCACTTCTCTCTCCTTCGCCAGATCTCTCGTCTCTTCTCCACTTCTCTCTTCTTCACCCCTTTCTCAGAGGTATATATATCCT
TCTAAAGCCTGATTTTCGAAATAATCCGATCTGATTTTTGATTCTTCTGTTGGATTTCCAGAAGAAATATCGAGTTTCGTCGGTGAATCGGAGCTTCAACTCCACCGCCGCAACTACTAA
ATGTTCAGCTTCAGATCCTGATCAGTTAAAAAATGCTAGAGAAGATATCAAAGAGCTTCTCAACACCAAATTCTGCCATCCAATTTTGTGGTTCGTTTGATTCCACTAATCACTTCTCTG
ATTCGTTTTATCGGTTTTTTGATATTATGTTGCGTTGTGTTGAATCATAGGTTCGATTAGGTTGGCATGATGCTGGTACATACAATAAGAACATTAAGGAATGGCCACAGAGAGGTGGAG
CTAATGGAAGTTTGAGATTTGAGATTGAGCTTAAGCATGCTGCGAATGCTGTGGTATAATATCACTTTATACGAATACGAATTAACGTCGTTTACTTGTGTTTGTTTCTATAAGCTTTGT
TTGTTGTGTGGTTTAGGTCTTGTGAATGCTTTAAACTTGATTAAGGATATCAAAGAGAAGTACTCTGGGATCACTTATGCTGATTTATTCCAATTGGCTAGTGCTACTGCTATAGAGAGG
TGAGGTTGATGATTCTTAACCTAGTTTTTACTGGTTATGAAAAGATTTACTAAAGTTTTGGTAGTTTTAGGAAGCTGGAGGACCTAAAATACCGATGAAATATGGAAGAGTTGATGCCTC
TGGTCCTGAGGATTGTCCTGAAGAAGGAAGGCTCCCTGTGGTAAAGTTTCTTCATTTACTGGTGTTTTCGGGCGTTCTTTGGTTATATTATTTGGGGGTATTAAAGTTGTACTGATTACA
AATATCGCATGTTTGTTCTATAGATGCTGGTCCTCCTTCACCTGCTAATCATCTCAGAGAAGTTTTTTACAGAATGGGACTAGACGACAAGAGGTGATTGCGGTCGTAATTTTATCATAG
TTATGGAAGATCAGTGAGTTAATTATCCATATTGATTTTTTTTTTTTGTAAATGCAGGACATAGTTGCGTTGTCTGGGGCTCACACGTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGG
GGGAAGCCAGAGACGAAATACACGCGGTATTATCCAGTTCTATTACGTATTGTCATGTTTGGGATTGCAGAACGTCAATGGAATAGAACATTTCGAATGTTAAGTTCTTAATGTGTTTTT
TTCGCATTATAGAAAGAGGGACCAGGCGCACCAGGAGGACAGTCATGGACACCAGAGTGGCTGAAGTTTGACAATTCTTACTTCAAGAGGTTGCATTTTCAGAAGATAACTTTTACTTTA
CACTTTGTAATAATAGTCTTCATTTTTCGATTTTGATGTCTATTAATATAATTATGATAACAGGAAATCAAGGAAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATC
TTTGAAGATTCTTCTTTCAAGAGGTAACAAACCGAGGTTGAAACATATCAATTCGAAGAAACTTTCTGAGTCTTTGCCTTTAAAACTGAAACTGCATTGCAATTGCAGGTCTATGCTGAG
AAGTATGCTGCTGATCAGGATGCATTCTTCAAGGATTACGCTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAAAATTTGACCCTCCTGAGAGGTTAGCATTCTTTAGATTTCTGTCA
TGTGAATAGCATCAAAACCATTATCACTCTTGACCTTATCATCTTTAACCGAAAACGACCTTGAAATCAATCTTTTGGTCTACATAGAGAATTTACAAATTTGGCGAATCTAGAGCTGTG
GAAATTAGATATCATCTTTTTGACATTGGATGAGTCTCCACTCCATTGATGAATAAATTTGCAGAGGCTTAAGAACTGATTATCTGAATCTTTTGTGTAGGGTATCGTTATCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACAGAGCGTGTGTTTCTCACACTCAACGGAACCCTCCTATCTCGTCCCAAAACCACCGCAACAACAATGTCTTCTTCTCTCCGTTCTACCACCGCCGCTTCTCGTCTCCTCCGCTCC
TCCTCCTCCACCAGATCCACTCTCACTCTCTCCGCTTTCACTTCTCTCTCCTTCGCCAGATCTCTCGTCTCTTCTCCACTTCTCTCTTCTTCACCCCTTTCTCAGAAGAAATATCGAGTT
TCGTCGGTGAATCGGAGCTTCAACTCCACCGCCGCAACTACTAAATGTTCAGCTTCAGATCCTGATCAGTTAAAAAATGCTAGAGAAGATATCAAAGAGCTTCTCAACACCAAATTCTGC
CATCCAATTTTGGTTCGATTAGGTTGGCATGATGCTGGTACATACAATAAGAACATTAAGGAATGGCCACAGAGAGGTGGAGCTAATGGAAGTTTGAGATTTGAGATTGAGCTTAAGCAT
GCTGCGAATGCTGGTCTTGTGAATGCTTTAAACTTGATTAAGGATATCAAAGAGAAGTACTCTGGGATCACTTATGCTGATTTATTCCAATTGGCTAGTGCTACTGCTATAGAGGAAGCT
GGAGGACCTAAAATACCGATGAAATATGGAAGAGTTGATGCCTCTGGTCCTGAGGATTGTCCTGAAGAAGGAAGGCTCCCTGATGCTGGTCCTCCTTCACCTGCTAATCATCTCAGAGAA
GTTTTTTACAGAATGGGACTAGACGACAAGGACATAGTTGCGTTGTCTGGGGCTCACACGTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGGGGGAAGCCAGAGACGAAATACACGAAA
GAGGGACCAGGCGCACCAGGAGGACAGTCATGGACACCAGAGTGGCTGAAGTTTGACAATTCTTACTTCAAGGAAATCAAGGAAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGAT
GCTGCCATCTTTGAAGATTCTTCTTTCAAGGTCTATGCTGAGAAGTATGCTGCTGATCAGGATGCATTCTTCAAGGATTACGCTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAAAA
TTTGACCCTCCTGAGGGGTATCGTTATCTAA

Retrieve as FASTA