Entry information : AlyPrx46
Entry ID 7548
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx46
Name AlyPrx46
Class Class III peroxidase    [Orthogroup: Prx026]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx46
start..stop
S start..stop
AhalPrx48 652 0 1..326 1..326
AtPrx46 623 0 1..326 1..326
NoffPrx46-1B 600 0 3..326 6..329
TsPrx46 573 0 3..326 6..330
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7548' 'join(4194482..4194703,4194776..4194955,4195163..4195328,4195544..4195956)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4194482..4194703 220 N° 2 4194776..4194955 178 N° 3 4195163..4195328 164 N° 4 4195544..4195956 411
join(4194482..4194703,4194776..4194955,4195163..4195328,4195544..4195956)


exon

Literature and cross-references AlyPrx46
DNA ref. Phytozome 12:   scaffold_7 (4194482..4195956)
Protein sequence: AlyPrx46
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (189)
PWM (Da):   %s   35144.14 (19621.9) Transmb domain:   %s   i12-34o
PI (pH):   %s   4.55 (6.08) Peptide Signal:   %s   cut: 30 range:30-218
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSYKLNYSSILHLLLFLSSLLTSSANLSFNFYAGSCSVAEFLV
RNTVRSATSSDPTIPGKLVRLLFHDCFVQ
GCDASVLIQGNGTERSDPGNASLGGFSVIDTAKNAIEILCPDTVSCADIVALAARDAVEAAGGPVVKIPTGRRDGKESMAANVRPNIIDTDFTLDQMIDAFSSKGLSIQDLVVLSGAHTI
GASHCNAFNGRFQRDSKGNFELIDASLDNSYAETLMNKCSSSESSSLTVSNDPETSSIFDNQYYRNLETHKGLFQTDSALMEDNRTRTMVEELASDEESFYQRWSESFVRLSMVGVKVGE
DGEIRRSCSSIN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 7, 3 introns)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCTCTTACAAACTAAACTATTCCTCTATTCTTCATCTCCTTCTGTTTCTTTCTAGTCTTCTCACTTCCTCCGCCAACCTCTCATTTAATTTCTACGCCGGTTCTTGTTCTGTA
GCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCCGGGGAAACTCGTCCGTCTCCTCTTCCACGACTGTTTCGTCCAG
AGGTAAGACACACTCATT
ACGAATTACAAAGGAAAGTGAAACAATTTGGCTTGAGATTTGTTTGTTGTTGCAAGGGTTGTGATGCGTCAGTGTTGATACAAGGGAATGGCACAGAGAGAAGTGATCCCGGAAATGCCT
CTCTTGGAGGATTCTCAGTCATAGACACAGCCAAGAACGCCATCGAGATTTTATGTCCGGACACTGTTTCCTGCGCTGACATAGTCGCACTTGCTGCTAGAGACGCCGTCGAAGCT
CTGT
AACATTCACTTTACTTCAATCTACTGTATATTGCTCTAATCCGGTTTAACCAATCCCAACTGAACCGAAAGCATGAAATCGACAAAAAAACATATAAACCTATTCTGTATCATTTTCTAA
TAGAAAAGAAAATAACCGGACTTGGAGATACATAAAACCGGTTATCCTTCTTAAGGTTTGAATGTTTTCTTTTTTGGCGGGACAGGCAGGAGGACCGGTGGTTAAGATTCCGACAGGGAG
GAGAGACGGGAAAGAATCGATGGCTGCAAACGTAAGACCGAACATCATCGACACAGATTTCACTCTCGATCAAATGATCGATGCCTTCTCTTCTAAAGGCTTGTCCATTCAAGATCTCGT
TGTCCTCTCTG
TGGTATCAAACTATCAATCAATGTTTCTAAACGCTTTTTATCAATTTCCCCAAAATGTTTTGCTAAACTCTAACAGAGTATGAAACAGAGTTTGCTTCAAGCCTACACG
AATTGACTAAGCCGGATTGGTCATTCAATTTACTCTTTGGTTAAGTCAATTCTTGTTGTAGCAAACTCTGTTAAACTCCTCAGATTCTTCTTTTATACTTGCATTTAGGAGCACACACGA
TTGGAGCATCACACTGTAACGCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGCTAATCGACGCGTCTCTCGACAACTCCTACGCAGAGACACTAATGAACAAATGTT
CGTCCTCGGAATCCTCGTCATTGACAGTGAGCAACGATCCAGAGACATCTTCCATATTCGATAATCAGTACTATAGGAATCTGGAGACTCACAAGGGTTTGTTCCAGACGGATTCTGCTT
TGATGGAGGATAATCGGACGAGGACGATGGTGGAGGAATTAGCGAGTGATGAGGAAAGTTTTTATCAGAGATGGAGTGAGTCGTTTGTGAGACTGAGTATGGTTGGTGTGAAAGTTGGTG
AAGATGGTGAGATAAGACGTTCTTGTTCTTCCATTAATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCTCTTACAAACTAAACTATTCCTCTATTCTTCATCTCCTTCTGTTTCTTTCTAGTCTTCTCACTTCCTCCGCCAACCTCTCATTTAATTTCTACGCCGGTTCTTGTTCTGTA
GCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCCGGGGAAACTCGTCCGTCTCCTCTTCCACGACTGTTTCGTCCAG
GGTTGTGATGCGTCAGTG
TTGATACAAGGGAATGGCACAGAGAGAAGTGATCCCGGAAATGCCTCTCTTGGAGGATTCTCAGTCATAGACACAGCCAAGAACGCCATCGAGATTTTATGTCCGGACACTGTTTCCTGC
GCTGACATAGTCGCACTTGCTGCTAGAGACGCCGTCGAAGCT
GCAGGAGGACCGGTGGTTAAGATTCCGACAGGGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTAAGACCGAAC
ATCATCGACACAGATTTCACTCTCGATCAAATGATCGATGCCTTCTCTTCTAAAGGCTTGTCCATTCAAGATCTCGTTGTCCTCTCTG
GAGCACACACGATTGGAGCATCACACTGTAAC
GCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGCTAATCGACGCGTCTCTCGACAACTCCTACGCAGAGACACTAATGAACAAATGTTCGTCCTCGGAATCCTCGTCA
TTGACAGTGAGCAACGATCCAGAGACATCTTCCATATTCGATAATCAGTACTATAGGAATCTGGAGACTCACAAGGGTTTGTTCCAGACGGATTCTGCTTTGATGGAGGATAATCGGACG
AGGACGATGGTGGAGGAATTAGCGAGTGATGAGGAAAGTTTTTATCAGAGATGGAGTGAGTCGTTTGTGAGACTGAGTATGGTTGGTGTGAAAGTTGGTGAAGATGGTGAGATAAGACGT
TCTTGTTCTTCCATTAATTGA

Retrieve as FASTA