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Entry information : AlyRboh[P]B
Entry ID 7582
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2010-08-11 (Christophe Dunand)
Peroxidase information: AlyRboh[P]B
Name AlyRboh[P]B
Class Respiratory burst oxidase homolog     [Orthogroup: AhpD002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyRboh[P]B
start..stop		 S start..stop
CsRboh03 1073 0 21..777 49..889
CclRboh03 1073 0 21..777 49..889
EglRboh04 1053 0 4..777 12..889
CcajRboh02 1052 0 24..777 56..889
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7582' 'join(3476054..3476423,3476576..3476736,3476845..3476892,3476990..3477103,3477242..3477677,3477830..3478216,3478343..3478441,3478458..3478490,3478583..3478656,3478734..3479233,3479315..3479421)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3476054..3476423 368 N° 2 3476576..3476736 159 N° 3 3476845..3476892 46 N° 4 3476990..3477103 112
N° 5 3477242..3477677 434 N° 6 3477830..3478216 385 N° 7 3478343..3478441 97 N° 8 3478458..3478490 31
N° 9 3478583..3478656 72 N° 10 3478734..3479233 498 N° 11 3479315..3479421 105  
join(3476054..3476423,3476576..3476736,3476845..3476892,3476990..3477103,3477242 ..3477677,3477830..3478216,3478343..3478441,3478458..3478490,3478583..3478656,34 78734..3479233,3479315..3479421)


exon

Literature and cross-references AlyRboh[P]B
DNA ref. Phytozome 12:   scaffold_1 (3476054..3479421)
Protein sequence: AlyRboh[P]B
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   776 (310)
PWM (Da):   %s   88501.13 (33831.2) Transmb domain:   %s   o292-311i433-455o475-497i596-613o
PI (pH):   %s   9.79 (9.12) Peptide Signal:   %s   cut: 32 range:32-341
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MESWSEEEKIKISRCKATGPENSEEDDVEITLEVRDESISTTKAKATLRSVLSGRLKTMVKTLSFASRRLDRSK*SGAMFALRGLRFIAKTDAVGRGWDEVATRFDQLAVEGKLPKSKFG
HCIGMVESSEFVNELFETLVRRRGTSSSSITKTELFEFWEQITGNSFDARLQIFFDMVDKNLDGRITGDEVKEIIALSASANKLSKIKENVDEYAALIMEELDRNNLGYIELHNLETLLL
QVPSQSNNSPSSANKRALNKMLSQKLIPTKDRNPVKRFARNISYYFLENWKRIWVLTLWISICIALFTWKFLQYKRKTVFEVLGYCVSVAKGSxETLKFNMALILLPVCRNTITWLRTKS
KLIGSVVPFDDNINFHKVIAFGIAIGTGLHAISHLACDFPRLLHAKNVEYEPVKRFFGDERPDNYGWFMKGTDGWTGVTMVVLMVVAYVLAQSWFRRNRANLPKSLKRLTGFNAFWYSHH
LFVIVYVLLIVHGYFIYLSKEWYHKTTWMYLAVSVLLYASERLIRAFRPGAKAVKILKVWTSQLKSLFSKVCQLPSTSQSGLFIADIGQANNITRFPRLLIDGPYGAPAQDYRHYDVLLL
VGLGIGATPLISIIRDVLNNIKNQKSIEQGTNQHIKNYVATKRAYFYWVTREQGSLEWFSEVMNEVAEYDSEGMIELHNYCTSVYEEGDARSALITMLQSLHHAKSGIDIVSGTRVRTHF
ARPDWRSVFKHVAVNHVNQRVGVFYCGNTCIIGELKRLAQDFSRKTTTKFEFHKENF

Retrieve as FASTA  
Remarks Pseudogene. Sequence from genomic (chromo 1). Codon in frame and missing sequence between KILKV and WTSQL.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAATCTTGGTCAGAAGAAGAGAAAATCAAGATTTCCCGATGCAAAGCCACTGGTCCAGAAAATTCTGAAGAGGACGACGTCGAGATCACACTCGAAGTGCGAGACGAAAGCATCAGC
ACAACGAAGGCCAAGGCGACACTTCGGTCTGTTCTTTCCGGGAGACTAAAAACGATGGTGAAGACGTTGTCGTTTGCTTCACGCCGGCTCGACCGTAGTAAGTAATCCGGTGCTATGTTT
GCTCTTCGAGGTTTGAGGTTCATTGCCAAAACCGACGCCGTTGGCAGAGGCTGGGATGAGGTTGCAACGAGGTTCGATCAGTTGGCCGTTGAAGGGAAGCTCCCTAAATCCAAATTTGGA
CATTGCATAGAGGTGAAAAATCTCTAAATAATATACTTTTTGGTTTTTTTAATTTTGTTTTTGGTAATTACACTCCAATGTAAGGCTCAACTTATTTCCCATATAATATTATATATTTGT
TATCTTTTAACGTAAATTTTAAAAGAATTATTTCAACTAAATAGGAATGGTTGAATCTAGCGAATTTGTGAACGAGCTTTTTGAGACGTTGGTCCGAAGGAGAGGGACTTCGTCATCGTC
AATCACCAAAACTGAATTGTTTGAATTTTGGGAGCAGATCACAGGCAATAGCTTTGATGCTAGACTGCAAATCTTTTTTGATATGTGTAAGCATATTTATTTCTAGTATTTGAATAGTAT
AATGCATGATTATCATTTATTATAAAATATGGTAAGTTGAGTAGTTATTTCTTTGTGTTTATGTAAATATATAAGGTGGACAAAAATTTGGACGGACGTATTACTGGAGATGAGGTTAAG
GAGAGGTGAAAGATAAATTAATAGCGATACCTAATTATATTTCGTTAGAGTCCTAATAAAAAGAAAAGTTAGAATCTAAGTTTTGTTTCGGCTTAATCGTAGATAATTGCTTTAAGTGCT
TCGGCGAACAAACTATCAAAGATTAAGGAAAATGTAGATGAATATGCTGCCTTGATCATGGAAGAACTCGATCGCAACAACCTCGGATATATTGAGAGGTTCGTTGTCTACTATCTAATG
GTTACACTTGTTTAACATCATTATAAAAAAGACAGGTTTAAATCCTTATAATCAATTAAATGTTTTTGTTATTTCAATGTGTTCACAAATATAGTTGAGCAATGGTTTATTTGCAGCTAC
ACAACTTGGAAACATTGCTTCTCCAAGTTCCAAGCCAATCAAACAACAGTCCATCTTCCGCGAACAAACGTGCACTCAACAAGATGTTGAGTCAGAAGCTGATACCAACGAAAGATCGGA
ACCCGGTGAAAAGATTTGCTAGGAATATTTCATACTACTTCTTGGAAAATTGGAAAAGGATTTGGGTGTTAACATTGTGGATATCCATTTGCATCGCTCTCTTCACTTGGAAATTTCTCC
AGTATAAACGCAAAACCGTATTCGAGGTGTTGGGCTACTGTGTTTCAGTGGCCAAAGGCAGTGGAGACCTTGAAATTCAACATGGCTCTCATCCTCTTGCCCGTTTGTAGGAACACTATA
ACTTGGCTAAGGACCAAGTCAAAGCTTATTGGGTCCGTTGTTCCATTTGATGACAACATCAATTTCCACAAGAGGTAAATTATTATGCATATTAATATCATATCTATACACATTATATAA
TTTTCATTAGCCAATAAATATCGGTGTATTTTTTTTATAGAAGAATACAAAAAGGCATACGATTGTGGTAAAAATTTGGTTATGCTTAATCTTTATTTCCATGCAGGTTATTGCGTTTGG
GATCGCAATTGGAACTGGCTTACACGCCATATCTCACCTGGCATGCGATTTCCCGCGTTTGTTGCATGCAAAAAATGTAGAATATGAGCCAGTAAAAAGGTTTTTCGGAGACGAGAGGCC
GGACAATTACGGATGGTTCATGAAAGGGACAGATGGTTGGACCGGAGTCACCATGGTGGTTCTAATGGTAGTGGCCTACGTCTTGGCGCAGTCTTGGTTCAGACGCAACCGGGCAAACCT
ACCAAAATCGTTGAAACGATTGACGGGTTTCAACGCGTTTTGGTACTCGCACCATTTGTTTGTCATCGTTTATGTGCTTCTAATCGTGCATGGCTATTTTATCTATCTCTCCAAGGAATG
GTACCACAAGACGCGGTACGTATATATACATATATCCTTTCTTGCGTCTTAATTAATCATGGAAATTTTCAGAAAATTAGAAAGATCATAATAGTTTTTTTGATGAAAGTATCGTTTGTT
ATTATTACGTACATTTGACAGACGTGGATGTATCTGGCTGTTTCCGTTCTACTATATGCATCTGAACGATTGATTCGTGCATTTAGACCAGGTGCCAAGGCTGTCAAGATTTTAAAGGTG
TGTTTCTACAATCTGTTTTGGACATCGCAACTCAAATCCTTATTTTCCAAGAGGTTACTAGTTTTCAAGAGTAATAACATTTATGAATTGATGATATATACGTGATTAGTTAGCTTTATA
ATTTGTTTTAATTACAAAACCATAGGTTTGTCAACTTCCCTCGACAAGTCAAAGTGGGCTCTTCATAGCTGACATAGGTCAAGCCAACAATATAACTAGAGGTACAGTATTTGGTATATA
TAATCATGTTTTAAAAACATGAGCATACAAATTTTTCTAATGAATTTTACATGGAAAGGTTTCCGAGGCTGTTAATCGATGGTCCATATGGAGCACCAGCACAAGATTACCGGCACTACG
ATGTATTGCTTCTGGTAGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCTTAACAACATCAAGAACCAGAAATCGATCGAACAAGGCACTAACCAACACATAA
AAAACTATGTTGCCACAAAACGAGCTTATTTCTATTGGGTAACAAGAGAGCAAGGATCATTGGAATGGTTCAGTGAGGTCATGAACGAGGTAGCTGAGTACGATAGCGAGGGGATGATTG
AACTACATAATTACTGTACGAGCGTGTATGAGGAAGGAGACGCGAGGTCAGCACTAATCACAATGTTGCAGTCATTGCACCATGCCAAGAGCGGCATTGACATCGTATCGGGCACGCGGG
TCCGAACCCATTTCGCTCGTCCCGATTGGCGTAGCGTCTTCAAGCACGTTGCTGTCAACCACGTCAATCAACGAGTTGTGGTATGTCATTATCACAACGATTACATAGCTATTGTAGAAT
CTTTCTAGTAACTGATTTTACTTTTTCTATTTTGTTGGTAGGGGTTTTCTACTGTGGTAATACATGCATCATAGGAGAGTTAAAGAGACTAGCTCAAGATTTCTCTAGGAAAACTACGAC
CAAGTTTGAGTTCCACAAGGAGAATTTT

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAATCTTGGTCAGAAGAAGAGAAAATCAAGATTTCCCGATGCAAAGCCACTGGTCCAGAAAATTCTGAAGAGGACGACGTCGAGATCACACTCGAAGTGCGAGACGAAAGCATCAGC
ACAACGAAGGCCAAGGCGACACTTCGGTCTGTTCTTTCCGGGAGACTAAAAACGATGGTGAAGACGTTGTCGTTTGCTTCACGCCGGCTCGACCGTAGTAAGTAATCCGGTGCTATGTTT
GCTCTTCGAGGTTTGAGGTTCATTGCCAAAACCGACGCCGTTGGCAGAGGCTGGGATGAGGTTGCAACGAGGTTCGATCAGTTGGCCGTTGAAGGGAAGCTCCCTAAATCCAAATTTGGA
CATTGCATAGGAATGGTTGAATCTAGCGAATTTGTGAACGAGCTTTTTGAGACGTTGGTCCGAAGGAGAGGGACTTCGTCATCGTCAATCACCAAAACTGAATTGTTTGAATTTTGGGAG
CAGATCACAGGCAATAGCTTTGATGCTAGACTGCAAATCTTTTTTGATATGGTGGACAAAAATTTGGACGGACGTATTACTGGAGATGAGGTTAAGGAGATAATTGCTTTAAGTGCTTCG
GCGAACAAACTATCAAAGATTAAGGAAAATGTAGATGAATATGCTGCCTTGATCATGGAAGAACTCGATCGCAACAACCTCGGATATATTGAGCTACACAACTTGGAAACATTGCTTCTC
CAAGTTCCAAGCCAATCAAACAACAGTCCATCTTCCGCGAACAAACGTGCACTCAACAAGATGTTGAGTCAGAAGCTGATACCAACGAAAGATCGGAACCCGGTGAAAAGATTTGCTAGG
AATATTTCATACTACTTCTTGGAAAATTGGAAAAGGATTTGGGTGTTAACATTGTGGATATCCATTTGCATCGCTCTCTTCACTTGGAAATTTCTCCAGTATAAACGCAAAACCGTATTC
GAGGTGTTGGGCTACTGTGTTTCAGTGGCCAAAGGCAGTGGAGACCTTGAAATTCAACATGGCTCTCATCCTCTTGCCCGTTTGTAGGAACACTATAACTTGGCTAAGGACCAAGTCAAA
GCTTATTGGGTCCGTTGTTCCATTTGATGACAACATCAATTTCCACAAGGTTATTGCGTTTGGGATCGCAATTGGAACTGGCTTACACGCCATATCTCACCTGGCATGCGATTTCCCGCG
TTTGTTGCATGCAAAAAATGTAGAATATGAGCCAGTAAAAAGGTTTTTCGGAGACGAGAGGCCGGACAATTACGGATGGTTCATGAAAGGGACAGATGGTTGGACCGGAGTCACCATGGT
GGTTCTAATGGTAGTGGCCTACGTCTTGGCGCAGTCTTGGTTCAGACGCAACCGGGCAAACCTACCAAAATCGTTGAAACGATTGACGGGTTTCAACGCGTTTTGGTACTCGCACCATTT
GTTTGTCATCGTTTATGTGCTTCTAATCGTGCATGGCTATTTTATCTATCTCTCCAAGGAATGGTACCACAAGACGACGTGGATGTATCTGGCTGTTTCCGTTCTACTATATGCATCTGA
ACGATTGATTCGTGCATTTAGACCAGGTGCCAAGGCTGTCAAGATTTTAAAGGTGTGGACATCGCAACTCAAATCCTTATTTTCCAAGGTTTGTCAACTTCCCTCGACAAGTCAAAGTGG
GCTCTTCATAGCTGACATAGGTCAAGCCAACAATATAACTAGGTTTCCGAGGCTGTTAATCGATGGTCCATATGGAGCACCAGCACAAGATTACCGGCACTACGATGTATTGCTTCTGGT
AGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCTTAACAACATCAAGAACCAGAAATCGATCGAACAAGGCACTAACCAACACATAAAAAACTATGTTGCCAC
AAAACGAGCTTATTTCTATTGGGTAACAAGAGAGCAAGGATCATTGGAATGGTTCAGTGAGGTCATGAACGAGGTAGCTGAGTACGATAGCGAGGGGATGATTGAACTACATAATTACTG
TACGAGCGTGTATGAGGAAGGAGACGCGAGGTCAGCACTAATCACAATGTTGCAGTCATTGCACCATGCCAAGAGCGGCATTGACATCGTATCGGGCACGCGGGTCCGAACCCATTTCGC
TCGTCCCGATTGGCGTAGCGTCTTCAAGCACGTTGCTGTCAACCACGTCAATCAACGAGTTGGGGTTTTCTACTGTGGTAATACATGCATCATAGGAGAGTTAAAGAGACTAGCTCAAGA
TTTCTCTAGGAAAACTACGACCAAGTTTGAGTTCCACAAGGAGAATTTT

Retrieve as FASTA