View Redoxidase 7817

Entry information : BdiPrx08 (Bradi1g17870)

Entry ID	7817
Creation	2011-01-06 (Toky Ramarohetra)
Last sequence changes	2011-01-06 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2014-01-08 (Qiang Li)

Peroxidase information: BdiPrx08 (Bradi1g17870)

Name (synonym)

BdiPrx08 (Bradi1g17870)

Class

Class III peroxidase [Orthogroup: Prx066]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium

Organism

Brachypodium distachyon [TaxId: 15368 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BdiPrx08 start..stop	S start..stop
TaPrx20-1B	494	3.26e-178	1..315	1..314
TaPrx20-1D	493	4.56e-178	1..315	1..313
TaPrx20-2D	488	9.49e-176	1..315	1..314
HvPrx29	487	1.01e-175	23..315	21..313

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7817' 'complement(join(14471614..14472177,14472942..14473325))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	14472942..14473325	382	N° 2	14471614..14472177	562
complement(join(14471614..14472177,14472942..14473325))

Literature and cross-references BdiPrx08 (Bradi1g17870)

DNA ref.	Phytozome 12: Bd1 (14473325..14471614)

Protein sequence: BdiPrx08 (Bradi1g17870)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	315 (293)
PWM (Da):	32789.52 (30672.4)
PI (pH):	7.28 (7.31)	Peptide Signal:	cut: 23 range:23-315

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASSSLLPSVMLLLCLAASASAQLSPTFYATSCPKALDTIKAAVT
AAVKKENRMGASLLRLHFHDCFVQGCDASVLLSGNEQNALPNVGSLRGFEVIDSIKAQVEALCKQTVSCADILTL
AARDSVVALGGPSWTVPLGRRDSLTANEALANSDLPPPFFDLVNLTKSFGDKGFSLTEMVALSGAHTIGQAQCLNFRDRLYNETTSIDAAFAASLKPNCPRPTGAPGDGNLAALDVSTPY
YFDNKYYVNLQAKKGLLHSDQVLFNGGGADNIVSNFASSAAAFSGAFASAMVKMGNLGPLTGSQGQVRLSCSKVN*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 1, intron 1), no EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCTCTTCATCTCTATTACCATCAGTCATGTTGCTCCTGTGTCTAGCGGCATCGGCGTCGGCGCAGCTTTCGCCGACTTTCTACGCCACGTCGTGCCCGAAGGCTCTGGACACCATC
AAGGCCGCCGTGACAGCCGCCGTGAAGAAGGAGAACCGCATGGGTGCCTCCCTGCTCCGGCTCCACTTCCACGACTGCTTCGTCCAGGGCTGCGACGCCTCCGTCCTGCTCTCCGGCAAC
GAGCAGAACGCGCTCCCCAACGTTGGCTCCCTCCGAGGCTTCGAGGTCATCGACAGCATCAAGGCCCAAGTCGAGGCCCTCTGCAAGCAGACCGTCTCCTGCGCCGACATCCTCACCCTC
GCCGCCCGGGACTCCGTCGTCGCCGTAAATAAGCTCAAACACCTTACATGCATACTTAATGTTCCCTCCGTTTCTAAATGTTCCCTCCGTTTCTAAATTGTTGTCGTGGTTTTAATTCAA
ATTTGAACTAAAACCATGACAAAAAATAAATTAGGAACGTAGAGAGTACAATAGCTAGGAAGCACGGATACGTTGATACGTATCTGATACGCGATACAGGGATACCACGATACGTCAATT
TTTTTAAAACATAGATACGGGGATACGTTTCTATATATATGTTAAATAAAAAAATACAGAAAGTACAAATTTTTATATGAGAAGCAGTCAAAAATTTAACTCCATTGCAAGATTGTTGCC
CAGTTTCCTGCAGTGCTCGAGCTCAAGCTCCCAACTGAAGCTGATGCTCTTCTTGCTATGGCTGACCTGGGCAGAGAAGGAGAGAACTGGAGAAAGAAGTCATGAAATCAATCACCCATT
CCGCGTGAACAGAGAAGGGAGATGGGTAGGATAAATCGATGGCCGATGGGCTTCTTCTGATGTTTAGTTTCCCGTATCCCACAAGTATCGGGAAGTATCCCTCACGTATCGGATATTTAA
AAAAAAAAATTAGATCGAAAAATTATCCGATACGGGCAAAATATGTATCGGGGAGTATCCAGGCGTATCCATGCAGTATCCGATACGGATACGCCAGCTCAGAGTCGTATCCGTGTTTCG
TACTACAACAGTACATTGCTCCCAAGGAGATCATTAATAATCTTGTTTTTTGCTCTTCTGGTGCACAGTTTTGGGAGGGCCATCTTGGACGGTGCCGCTGGGCAGGCGAGACTCGCTGAC
GGCAAACGAGGCATTGGCCAACAGCGACCTTCCGCCGCCGTTCTTCGACCTTGTCAACCTCACAAAGTCCTTCGGCGACAAAGGATTCTCGCTCACAGAAATGGTGGCACTTTCAGGCGC
TCACACAATCGGGCAAGCTCAGTGCCTCAACTTCAGGGACAGGCTCTACAACGAGACCACGAGCATCGACGCCGCCTTCGCGGCGTCCCTGAAGCCCAACTGCCCGCGGCCCACGGGCGC
CCCCGGCGACGGCAACCTGGCTGCGCTGGACGTGAGCACGCCCTACTACTTCGACAACAAGTACTATGTGAATTTGCAGGCCAAGAAGGGGCTGCTGCACTCGGACCAGGTGCTGTTTAA
CGGCGGGGGAGCTGATAACATTGTCAGCAACTTCGCGTCCAGCGCGGCGGCGTTCAGTGGCGCATTCGCGTCGGCGATGGTGAAGATGGGGAACCTTGGCCCGTTGACTGGGTCGCAGGG
CCAGGTCAGGCTCAGCTGCTCCAAGGTGAACTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATAGGTCAAC CGATCAAATC AATCTTCACA AGAGTGCCTT AATTCTAGCT CGATCGATCA CCACAAGCTA AGCTTAATTA AGCTAGCTAT AGCAGCCATG GCCTCTTCAT CTCTATTACC ATCAGTCATG TTGCTCCTGT GTCTAGCGGC ATCGGCGTCG GCGCAGCTTT CGCCGACTTT CTACGCCACG TCGTGCCCGA AGGCTCTGGA CACCATCAAG GCCGCCGTGA CAGCCGCCGT GAAGAAGGAG AACCGCATGG GTGCCTCCCT GCTCCGGCTC CACTTCCACG ACTGCTTCGT CCAGGGCTGC GACGCCTCCG TCCTGCTCTC CGGCAACGAG CAGAACGCGC TCCCCAACGT TGGCTCCCTC CGAGGCTTCG AGGTCATCGA CAGCATCAAG GCCCAAGTCG AGGCCCTCTG CAAGCAGACC GTCTCCTGCG CCGACATCCT CACCCTCGCC GCCCGGGACT CCGTCGTCGC CTTGGGAGGG CCATCTTGGA CGGTGCCGCT GGGCAGGCGA GACTCGCTGA CGGCAAACGA GGCATTGGCC AACAGCGACC TTCCGCCGCC GTTCTTCGAC CTTGTCAACC TCACAAAGTC CTTCGGCGAC AAAGGATTCT CGCTCACAGA AATGGTGGCA CTTTCAGGCG CTCACACAAT CGGGCAAGCT CAGTGCCTCA ACTTCAGGGA CAGGCTCTAC AACGAGACCA CGAGCATCGA CGCCGCCTTC GCGGCGTCCC TGAAGCCCAA CTGCCCGCGG CCCACGGGCG CCCCCGGCGA CGGCAACCTG GCTGCGCTGG ACGTGAGCAC GCCCTACTAC TTCGACAACA AGTACTATGT GAATTTGCAG GCCAAGAAGG GGCTGCTGCA CTCGGACCAG GTGCTGTTTA ACGGCGGGGG AGCTGATAAC ATTGTCAGCA ACTTCGCGTC CAGCGCGGCG GCGTTCAGTG GCGCATTCGC GTCGGCGATG GTGAAGATGG GGAACCTTGG CCCGTTGACT GGGTCGCAGG GCCAGGTCAG GCTCAGCTGC TCCAAGGTGA ACTAGGTTGA ATTTGAATCC TCGCCGTTGT TTCAAGGGGA TGAGTGAGTG AATCGATTAA TAAGGCTCGC TATATATGTG GCCATTATAT TCCTCAATCA TAGTATGTTT ACAAGATTGG GAAAACTGAG AAAGGTGCAT GTATGTACTG AAGATGGTGT GTATGTGTAC GTATCACAAG GAAGGACCTC ATGCAAAGGC ATGGAGGATT CCACTATTAT ACATACGGAG TATGAGTTAC TTCTTGGCTA AAAATTAAAC GCTCTGTGTT TAGTGATGTA
GTAATATTAA CGTGCTACCT ATGTATCCAA TGTGGACCGA GCAATGCTAG GACGGCTTGA GTGTGCGTCC GCATGAGGTT GGTTGCTTCT CCTT

Retrieve as FASTA