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Entry information : BdiPrx56 (Bradi2g09690)
Entry ID 7824
Creation 2011-01-12 (Toky Ramarohetra)
Last sequence changes 2011-01-12 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2014-01-08 (Qiang Li)
Peroxidase information: BdiPrx56 (Bradi2g09690)
Name (synonym) BdiPrx56 (Bradi2g09690)
Class Class III peroxidase    [Orthogroup: Prx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer Abiotic stress
Repressor N/D
Best BLASTp hits
Perox score E-value BdiPrx56
start..stop		 S start..stop
HvPrx38 644 0 1..334 1..333
BdiPrx55 634 0 1..334 1..337
SiPrx17 628 0 1..334 1..334
TaPrx08-3D 627 0 1..334 1..335
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7824' 'join(7960580..7960807,7961409..7961600,7961693..7962277)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 7960580..7960807 226 N° 2 7961409..7961600 190 N° 3 7961693..7962277 583  
join(7960580..7960807,7961409..7961600,7961693..7962277)


exon

Literature and cross-references BdiPrx56 (Bradi2g09690)
Literature Lucas,S., Rokhsar,D., Wang,M., Lindquist,E.A., Fox,S.E., Vogel,J., Bragg,J.N., McKenzie,N., Bevan,M.W., Garvin,D., Michael,T., Hazen,S., Chang,J., Laudencia-Chingcuanco,D., Weng,Y. and Mockler,T. DOE Joint Genome Institute Brachypodium distachyon EST project. Unpublished (2009)
DNA ref. Phytozome 12:   Bd2 (7960580..7962277)
EST ref. GenBank:   GT772405.1 [5' end]  GT772406.1 [3' end]
Protein sequence: BdiPrx56 (Bradi2g09690)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   334 (309)
PWM (Da):   %s   35768.17 (33284.8) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.04 (7.99) Peptide Signal:   %s   cut: 26 range:26-334
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAISMGCLVVLCVVCPLLLAGAVRANPWYGLFPQFYDQSCPKAKE
IVQSIVAQAVAQETRMAASLVRLHFHDCFVKGCDASVLLDNSSSIVSEKGSNPNLNSLRGFEVVDQIKVALEMACPGTVSCADILALAARDSTVLVGGPYWDVPLGRRDSLGASIQGSNNDLPAPNNTLPTIITKFKRLGLNIVDVVALSG
GHTIGMSRCTSFRQRLYNQSGNGRADGTLDVSYAAQLRQGCPRSGGDNNLFPLDVVSPAKFDNLYFKNILAGKGLLSSDEVLLTKSAETAALVKAYADDVHLFFQHFAQSMVNMGNITPL
TGSQGEIRKNCRRLNNYH*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, introns 1 and 2), 2 ESTs. Strain="Bd21".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATTTCCATGGGTTGCTTGGTGGTGCTCTGTGTTGTCTGTCCTCTCCTCCTTGCAGGTGCTGTCCGTGCCAATCCATGGTACGGCTTGTTCCCACAGTTCTACGACCAATCGTGC
CCAAAGGCAAAGGAGATTGTGCAATCCATCGTGGCACAGGCTGTTGCCCAAGAGACCAGGATGGCAGCATCCTTGGTCAGGCTGCATTTCCATGACTGCTTTGTCAAGAGGTCTCTGCTT
CCTCTTTACTGCAGTATCCCTTACTTGTTTCTACAATGATATAATGATGCTTGCTGAACATAGTTCCTGTAATTTAGTACAGAAACATACATGCTTTAATGTTAGTGTATGAATAATACA
ATCAGCTAAACAATTTATTAGTTAAGTTCAGCAGTTTGAATCCTTAACGTGCAAAGTGTTCAGTTATAACTTAAGCTTTTGCTATAAATTTGTCCTTGCATTTGAAACCGTGTCCGGAGG
ACCAGAAAAGAATCTCTAGTTTTTAGGCTAACTTTTTAGTATTTACCAATGATAAGATAAGATAGCCTACCTACACAGCTACATTGCCCATGATGAGCACTACCTTATGTCTTCTTGACA
TGATCGAGTCTGTACGATGAATGCTTTTCCCCAACAAAAACAGATGGTGATTACTCAAATCAAATGCACAATAATTGGAGGTCTATGCAATGGTCGTCCTTCACTTAATGCATGTACCAA
TGTACCTGATCAATCGACACTATTTTGTTGCATGTGCCCAATCTATGTACTACCCACATGCCTGATTTATCCACCAACATTTTCTGACATCTTTTCTTCTTGTGAGTATAGGGGTGTGAT
GCATCCGTGCTGCTGGACAATAGCAGCAGCATAGTCAGCGAGAAGGGTTCCAATCCCAATCTAAACTCCCTCCGGGGGTTCGAGGTCGTCGACCAAATCAAGGTCGCCCTTGAGATGGCC
TGCCCCGGCACCGTCTCCTGTGCTGACATCCTTGCCCTCGCCGCCCGTGACTCCACTGTCCTCTCGTATGTGAACAACACAAGTAACTCTGTTCCTAGTTAGCAAGAACTAAACAATTCA
GTATGTTTGATTTTTCGGGACCCAAATTGACCTACAGGTTGGTGGCCCATACTGGGACGTGCCACTCGGCCGGAGGGACTCTCTTGGCGCGAGCATCCAGGGCTCCAACAATGACCTCCC
TGCCCCCAACAATACCCTCCCCACCATCATCACCAAGTTCAAGCGCCTTGGCCTCAACATCGTGGATGTCGTCGCCCTCTCAGGTGGCCACACCATCGGCATGTCCCGATGCACCAGCTT
TCGGCAGAGGCTGTACAACCAGTCGGGCAACGGCAGGGCCGACGGCACACTGGATGTGTCCTACGCGGCACAACTGAGGCAGGGGTGCCCCCGCTCTGGCGGCGACAACAACCTCTTCCC
ACTGGACGTCGTCAGCCCAGCCAAGTTTGACAACCTGTACTTCAAGAACATCCTGGCTGGCAAGGGCCTCCTCAGCTCTGACGAGGTCCTGCTCACCAAGAGCGCCGAGACAGCGGCGCT
CGTCAAGGCATACGCAGATGATGTGCACCTCTTCTTCCAGCACTTTGCACAGTCGATGGTGAACATGGGCAACATCACGCCACTGACTGGGTCACAGGGTGAGATCAGGAAGAACTGCAG
GAGGCTCAACAACTATCATTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATTTCCATGGGTTGCTTGGTGGTGCTCTGTGTTGTCTGTCCTCTCCTCCTTGCAGGTGCTGTCCGTGCCAATCCATGGTACGGCTTGTTCCCACAGTTCTACGACCAATCGTGC
CCAAAGGCAAAGGAGATTGTGCAATCCATCGTGGCACAGGCTGTTGCCCAAGAGACCAGGATGGCAGCATCCTTGGTCAGGCTGCATTTCCATGACTGCTTTGTCAAGGGGTGTGATGCA
TCCGTGCTGCTGGACAATAGCAGCAGCATAGTCAGCGAGAAGGGTTCCAATCCCAATCTAAACTCCCTCCGGGGGTTCGAGGTCGTCGACCAAATCAAGGTCGCCCTTGAGATGGCCTGC
CCCGGCACCGTCTCCTGTGCTGACATCCTTGCCCTCGCCGCCCGTGACTCCACTGTCCTCGTTGGTGGCCCATACTGGGACGTGCCACTCGGCCGGAGGGACTCTCTTGGCGCGAGCATC
CAGGGCTCCAACAATGACCTCCCTGCCCCCAACAATACCCTCCCCACCATCATCACCAAGTTCAAGCGCCTTGGCCTCAACATCGTGGATGTCGTCGCCCTCTCAGGTGGCCACACCATC
GGCATGTCCCGATGCACCAGCTTTCGGCAGAGGCTGTACAACCAGTCGGGCAACGGCAGGGCCGACGGCACACTGGATGTGTCCTACGCGGCACAACTGAGGCAGGGGTGCCCCCGCTCT
GGCGGCGACAACAACCTCTTCCCACTGGACGTCGTCAGCCCAGCCAAGTTTGACAACCTGTACTTCAAGAACATCCTGGCTGGCAAGGGCCTCCTCAGCTCTGACGAGGTCCTGCTCACC
AAGAGCGCCGAGACAGCGGCGCTCGTCAAGGCATACGCAGATGATGTGCACCTCTTCTTCCAGCACTTTGCACAGTCGATGGTGAACATGGGCAACATCACGCCACTGACTGGGTCACAG
GGTGAGATCAGGAAGAACTGCAGGAGGCTCAACAACTATCATTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ACCCACAAGA AGAGAAGTAG AAGCAAACAA GTAGCAAGTT GGCAACTCTC TTATATCACT TGTAACGAAG TGCAGCAAAG GAATTACTTA CATGGCGATT TCCATGGGTT GCTTGGTGGT  GCTCTGTGTT GTCTGTCCTC TCCTCCTTGC AGGTGCTGTC CGTGCCAATC CATGGTACGG CTTGTTCCCA CAGTTCTACG ACCAATCGTG CCCAAAGGCA AAGGAGATTG TGCAATCCAT  CGTGGCACAG GCTGTTGCCC AAGAGACCAG GATGGCAGCA TCCTTGGTCA GGCTGCATTT CCATGACTGC TTTGTCAAGG GGTGTGATGC ATCCGTGCTG CTGGACAATA GCAGCAGCAT  AGTCAGCGAG AAGGGTTCCA ATCCCAATCT AAACTCCCTC CGGGGGTTCG AGGTCGTCGA CCAAATCAAG GTCGCCCTTG AGATGGCCTG CCCCGGCACC GTCTCCTGTG CTGACATCCT  TGCCCTCGCC GCCCGTGACT CCACTGTCCT CGTTGGTGGC CCATACTGGG ACGTGCCACT CGGCCGGAGG GACTCTCTTG GCGCGAGCAT CCAGGGCTCC AACAATGACC TCCCTGCCCC  CAACAATACC CTCCCCACCA TCATCACCAA GTTCAAGCGC CTTGGCCTCA ACATCGTGGA TGTCGTCGCC CTCTCAGGTG GCCACACCAT CGGCATGTCC CGATGCACCA GCTTTCGGCA  GAGGCTGTAC AACCAGTCGG GCAACGGCAG GGCCGACGGC ACACTGGATG TGTCCTACGC GGCACAACTG AGGCAGGGGT GCCCCCGCTC TGGCGGCGAC AACAACCTCT TCCCACTGGA  CGTCGTCAGC CCAGCCAAGT TTGACAACCT GTACTTCAAG AACATCCTGG CTGGCAAGGG CCTCCTCAGC TCTGACGAGG TCCTGCTCAC CAAGAGCGCC GAGACAGCGG CGCTCGTCAA  GGCATACGCA GATGATGTGC ACCTCTTCTT CCAGCACTTT GCACAGTCGA TGGTGAACAT GGGCAACATC ACGCCACTGA CTGGGTCACA GGGTGAGATC AGGAAGAACT GCAGGAGGCT  CAACAACTAT CATTGAATTA CTGAAGCTGC TGTGTGTGCT AAATTCTGTG TGGAGTTGGT GCCATATTTT GTTTGAATAA GCAAGTGTGG TTGTAATTTT CAAAATTACT CAATCATTTG 
TGTTATGTCA TTGCGAAATG TGTATGTAAT AATAATTCAA TATGTAAGAT GAGTCGTTAC TTTACTTGG 

Retrieve as FASTA