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Entry information : BdiPrx42 (Bradi1g63060)
Entry ID 7840
Creation 2011-01-12 (Toky Ramarohetra)
Last sequence changes 2011-01-12 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2014-01-08 (Qiang Li)
Peroxidase information: BdiPrx42 (Bradi1g63060)
Name (synonym) BdiPrx42 (Bradi1g63060)
Class Class III peroxidase    [Orthogroup: Prx209]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiPrx42
start..stop		 S start..stop
TaPrx238-1B 516 0 34..321 29..320
SbPrx17 463 7.16e-166 28..321 23..318
SiPrx122 447 2.95e-159 15..321 27..338
TaPrx60-1A 440 1.01e-156 30..321 26..321
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7840' 'join(62268571..62268792,62269218..62269409,62269600..62269765,62271243..62271628)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 62268571..62268792 220 N° 2 62269218..62269409 190 N° 3 62269600..62269765 164 N° 4 62271243..62271628 384
join(62268571..62268792,62269218..62269409,62269600..62269765,62271243..62271628 )


exon

Literature and cross-references BdiPrx42 (Bradi1g63060)
DNA ref. Phytozome 12:   Bd1 (62268571..62271628)
Protein sequence: BdiPrx42 (Bradi1g63060)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   321 (292)
PWM (Da):   %s   32520.08 (29913.6) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.5 (4.50) Peptide Signal:   %s   cut: 30 range:30-321
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGFSGGSVVPPAVATAILLLLGLAAAASAQLSATFYDASCPSALA
TIKSAVTAAVSKEPRMGASLLRLHFHDCFGCDASVLLADTANFTGEQTAFPNANSIRGLDVIDTVKAQVEAVCTQIVSCADILAVAARDSVVTLGGPSYTVPLGRRDSTTASLSLANNDLPPPTSDLADLVGNFSRKGLSTTDMVALSG
AHTIGQAACTNFQSRIYGESNINAAYAASLQANCPQSGGDGNFAPLDVATPNAFDNAYYGNLVSQQGLLHSDQQLLNGGSTDALVSTYASSATQFSADFAAAMVSMGNIGVLTGSQGQIR
LNCAKVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, intron 1, 2 and 3), No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGTTTTCCGGCGGCAGCGTCGTTCCTCCAGCTGTGGCGACGGCGATCCTGCTGCTGCTGGGCCTGGCCGCGGCGGCGTCGGCTCAGCTGTCGGCGACGTTCTACGACGCGTCCTGC
CCGAGCGCGCTTGCGACGATCAAGAGCGCCGTGACGGCGGCGGTGAGCAAGGAGCCACGCATGGGGGCTTCCCTGCTCAGGCTTCACTTCCACGACTGCTTTTTGTCCAAGCAAGTCACC
TTACATCTCTCTCTGTTTCTCGCCCTCTGGCCTCTGCTTCCGTACAAATCCAGTATGTAGTGATTCAGATAAAGTGCGACCCTTGTATCTGCTTGCATAAATCAGTACTGCTGCTGCTGT
TGAATTTTTCCAACGTACTCTCTCCGTTCCAAATTAACTGTCATGGATTACATGATGTTGATCATGCATGCCACGTCAAATTAACGGCTAATTTGCATTCGCTGGCTTTTATCTTGTACG
TTACGTTATTAACACCGGTAGCTGGCTGCTGGCGGCCCGATCGACGTGTATCTATTTTGTAGCTGCACGTACGTACGCAAACTAGCTATCACGTCGATTTACACACTGTAGTGTCGACGG
TGGGTTCTAAGCTGGCTTGCATATACATGCATGTCGTGGTGTGTGACAGGGATGCGACGCGTCGGTGCTGCTTGCCGACACCGCCAACTTCACCGGTGAGCAGACCGCTTTCCCCAACGC
CAACTCCATCAGAGGCCTCGACGTCATCGACACCGTCAAGGCGCAGGTCGAGGCCGTCTGCACGCAGATCGTCTCCTGCGCCGATATCCTCGCCGTCGCCGCCCGTGACTCGGTCGTCAC
GCGGTAATTAATGGCAAGCTTCATGTCCTAGCCAATGCAACCAAAAGACCGATTTTATGAAAGTGGCTAAACAATCCATTTATATTTCAACAATTAACTCTACTTCTAAACCAAATATGA
TGAATATATAGAATTATATATAGATCAACCGTAGTTTTTGAGAACTAAAGGTCGATTGATTATTTACTTGCAGCTAGGAGGGCCGTCGTATACGGTTCCATTGGGGAGGAGGGACTCCAC
CACGGCGAGCCTCTCCCTGGCGAACAACGACCTCCCTCCGCCCACCTCCGACCTTGCCGATCTCGTCGGCAACTTCTCCAGGAAGGGGCTCAGCACCACCGACATGGTTGCACTATCAGA
GGTAATTATTCGGGACCTCTGCTGATTTGCTTCAGTTAAGTTTCGGGGCGCAATGTATAGGCAGCAGACTTAACAAGTGAAGACGTTTCAGTTTTTCACGTGCTCGTTTAGAAAGTAGAA
CATGCCTCCTCGATCACAGATCATTGTTCACAGAAAAATGACACGCATTTTTTTTTCTTTTACATCAGAAAATGACATGATGCTAACAACCCTACAATTGATATGACGAGCAATGACACG
TATGTTTTTTCTCTTTAATTTACACCAGAGAAATGACATGTATGCTAACAACCCAACAATTTGATATGACGACAATGACACGTATGTTTTTTTCTTTTTCACCAGAGAAATGACATGTAT
GCTAACAACCCTACAATTTGATATGACGAGCAATACCTACATGGCTACATAGTTAGTAACCGGCGAGTGACAAGTGACCAGACGGTGGCATCTATAGCAGATGATCAGACCTTACATTTA
TTTATAATTACTTTGCTACAAAATGCTCCATCCGTTCCTCATTTTTTTTACGTTGTTTTAGTTCAAATTTGCACTAAAATCGCGACAAGAATTTAGAGACGGAGGGAACAGTATTTGTTA
TATATGTGCATTTTTCACATTAGGGTGTCTAATTTTTTCCAAGAGTCTAAAAAACATGTGCGCATAAGAGATACGTGTATTTTTTCGTCCTTCAACTAAAATTTGGACTTTGTCTGTCAA
CTATATTTTGGTACACATTTTGTCCCTCAACTATTGGCATCGGTTAAATTTGGTCTCATGTCGGTTTAGGATGATCAAAACTGGATTTGACCTGACCAGCTGATGGATGGACTGATCAGT
GCCATGATGTCGCAATTTTTTGTGGACCTCACCCTACCATCCCATGAAAAATCATCACATCATGTGCCAACATGGTTAAAAGTCAACCATTCATCCGTCATGTCAGGTCAATTTTGGTTT
GACGTACCATGCTAAACTAGCATGTGGACCAAATTTGCCCAATATTGAAAATTGAATGACCAAGTTCGTGCAAATAGGTGTTGAGGAACAAAGTCTGTACTTTCTCAAGAGTTGAGAGAC
GAAGTCTGTACTTCCGCAATTATTGAGAGACGAAACTACACTTAGCCATGGACTAATTAATCCCATTTAAAAGGATAGCTGAGCTGGAACCATCAAAAGAGAAATCACGTCGTCCACGAG
ACCAGGACAGCTTAACAAACATTTTTGGGGTAGGCAGCCAGCAGACTTCTTCCAGCCAGTCTGCATGCTGCTCCTTACGCAGTCCGCCGTCGCCACACGGATCCCAGCCGTGGCATGCAT
GCACCGCTCAAAGCTGCACGATCCGGTGCACCCAGCCCTTGTTGCGTAGGGCAACAAGGCATGCAGCACCAGGGTTTTGAGAATTCCAAAAGTATACATGGCTCTTAATTTCAACATTAT
CTTTTCTCAAATTCTAAATATGTGACCCATGCATGCAGGAGCCCACACGATCGGGCAGGCGGCGTGCACCAACTTCCAGAGCCGAATCTACGGCGAGTCCAACATCAATGCGGCGTACGC
GGCGTCACTGCAGGCCAACTGCCCTCAGTCCGGCGGCGACGGCAACTTCGCGCCGCTTGACGTGGCGACCCCCAACGCCTTCGACAATGCTTACTACGGCAACCTGGTCTCGCAGCAAGG
GCTCCTCCACTCCGACCAGCAGCTCCTCAACGGCGGATCCACCGACGCCCTTGTCAGCACCTACGCGTCCAGTGCCACTCAGTTCAGCGCCGACTTCGCAGCGGCCATGGTGAGCATGGG
CAATATCGGCGTGCTCACGGGCTCTCAAGGGCAGATCAGGCTCAACTGCGCCAAGGTAAATTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGTTTTCCGGCGGCAGCGTCGTTCCTCCAGCTGTGGCGACGGCGATCCTGCTGCTGCTGGGCCTGGCCGCGGCGGCGTCGGCTCAGCTGTCGGCGACGTTCTACGACGCGTCCTGC
CCGAGCGCGCTTGCGACGATCAAGAGCGCCGTGACGGCGGCGGTGAGCAAGGAGCCACGCATGGGGGCTTCCCTGCTCAGGCTTCACTTCCACGACTGCTTTGGATGCGACGCGTCGGTG
CTGCTTGCCGACACCGCCAACTTCACCGGTGAGCAGACCGCTTTCCCCAACGCCAACTCCATCAGAGGCCTCGACGTCATCGACACCGTCAAGGCGCAGGTCGAGGCCGTCTGCACGCAG
ATCGTCTCCTGCGCCGATATCCTCGCCGTCGCCGCCCGTGACTCGGTCGTCACGCTAGGAGGGCCGTCGTATACGGTTCCATTGGGGAGGAGGGACTCCACCACGGCGAGCCTCTCCCTG
GCGAACAACGACCTCCCTCCGCCCACCTCCGACCTTGCCGATCTCGTCGGCAACTTCTCCAGGAAGGGGCTCAGCACCACCGACATGGTTGCACTATCAGGAGCCCACACGATCGGGCAG
GCGGCGTGCACCAACTTCCAGAGCCGAATCTACGGCGAGTCCAACATCAATGCGGCGTACGCGGCGTCACTGCAGGCCAACTGCCCTCAGTCCGGCGGCGACGGCAACTTCGCGCCGCTT
GACGTGGCGACCCCCAACGCCTTCGACAATGCTTACTACGGCAACCTGGTCTCGCAGCAAGGGCTCCTCCACTCCGACCAGCAGCTCCTCAACGGCGGATCCACCGACGCCCTTGTCAGC
ACCTACGCGTCCAGTGCCACTCAGTTCAGCGCCGACTTCGCAGCGGCCATGGTGAGCATGGGCAATATCGGCGTGCTCACGGGCTCTCAAGGGCAGATCAGGCTCAACTGCGCCAAGGTA
AATTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGTTTT CCGGCGGCAG CGTCGTTCCT CCAGCTGTGG CGACGGCGAT CCTGCTGCTG CTGGGCCTGG CCGCGGCGGC GTCGGCTCAG CTGTCGGCGA CGTTCTACGA CGCGTCCTGC  CCGAGCGCGC TTGCGACGAT CAAGAGCGCC GTGACGGCGG CGGTGAGCAA GGAGCCACGC ATGGGGGCTT CCCTGCTCAG GCTTCACTTC CACGACTGCT TTGGATGCGA CGCGTCGGTG  CTGCTTGCCG ACACCGCCAA CTTCACCGGT GAGCAGACCG CTTTCCCCAA CGCCAACTCC ATCAGAGGCC TCGACGTCAT CGACACCGTC AAGGCGCAGG TCGAGGCCGT CTGCACGCAG  ATCGTCTCCT GCGCCGATAT CCTCGCCGTC GCCGCCCGTG ACTCGGTCGT CACGCTAGGA GGGCCGTCGT ATACGGTTCC ATTGGGGAGG AGGGACTCCA CCACGGCGAG CCTCTCCCTG  GCGAACAACG ACCTCCCTCC GCCCACCTCC GACCTTGCCG ATCTCGTCGG CAACTTCTCC AGGAAGGGGC TCAGCACCAC CGACATGGTT GCACTATCAG GAGCCCACAC GATCGGGCAG  GCGGCGTGCA CCAACTTCCA GAGCCGAATC TACGGCGAGT CCAACATCAA TGCGGCGTAC GCGGCGTCAC TGCAGGCCAA CTGCCCTCAG TCCGGCGGCG ACGGCAACTT CGCGCCGCTT  GACGTGGCGA CCCCCAACGC CTTCGACAAT GCTTACTACG GCAACCTGGT CTCGCAGCAA GGGCTCCTCC ACTCCGACCA GCAGCTCCTC AACGGCGGAT CCACCGACGC CCTTGTCAGC  ACCTACGCGT CCAGTGCCAC TCAGTTCAGC GCCGACTTCG CAGCGGCCAT GGTGAGCATG GGCAATATCG GCGTGCTCAC GGGCTCTCAA GGGCAGATCA GGCTCAACTG CGCCAAGGTA  AATTGAGTGA AAGTGACAAA ACCCATATAT ATAAATTTGT GGAGCATTTG CGACTGCCAG TTAGTTGGGA TGGCAACTTT ACAAGAATTG AGTAACAATG AAAGTCTTTT TTTCCCGAGT 
AATA 

Retrieve as FASTA