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Entry information : BdiPrx46 (Bradi1g68900)
Entry ID 7841
Creation 2011-01-12 (Toky Ramarohetra)
Last sequence changes 2011-01-12 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2014-01-08 (Qiang Li)
Peroxidase information: BdiPrx46 (Bradi1g68900)
Name (synonym) BdiPrx46 (Bradi1g68900)
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiPrx46
start..stop		 S start..stop
TaPrx41-1B 571 0 22..331 27..336
TaPrx41-1D 562 0 22..331 27..336
TaPrx41-1A 555 0 22..331 27..336
OsPrx39 517 0 26..331 28..333
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7841' 'join(67352566..67352781,67352904..67353095,67353528..67353693,67353781..67354202)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 67352566..67352781 214 N° 2 67352904..67353095 190 N° 3 67353528..67353693 164 N° 4 67353781..67354202 420
join(67352566..67352781,67352904..67353095,67353528..67353693,67353781..67354202 )


exon

Literature and cross-references BdiPrx46 (Bradi1g68900)
DNA ref. Phytozome 12:   Bd1 (67352566..67354202)
Protein sequence: BdiPrx46 (Bradi1g68900)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (306)
PWM (Da):   %s   35580.24 (33237.9)  
PI (pH):   %s   9.31 (9.31) Peptide Signal:   %s   cut: 26 range:26-331
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQAIRAVLLGIAVVLGLGGVPGGEAQLDEKFYDGSCPGVHRIVRR
VLKEAHQADVRIYASLTRLHFHDCFVQGCDGSILLDNSTSIVSEKFAKPNNNSVRGYTVVDAVKAALEEACPGVVSCADILAVAAKISVELSGGPRWRVPLGRRDGTTANLTAANHVLPSPRDNITMLQRKFRAVGLDDTDLVALSG
AHTFGRAQCQFVTDRLYNFSKTGKPDPTMDAGYRVQLARSCPRRHGNRTALRDLDPATPDAFDKSYFTNLQASRGFLQSDQELLLAPGAPTAAIVARFAGSEKAFFRSFASSMVNMGNIR
PLTGGQGEVRKNCWKVNGS

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, intron 1, 2 and 3), no EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGGCAATTCGTGCCGTCCTTCTGGGCATCGCCGTCGTGCTCGGCCTGGGCGGCGTCCCCGGCGGCGAGGCGCAGCTGGACGAGAAGTTCTACGACGGCTCGTGCCCGGGCGTGCAC
AGGATCGTGCGGCGGGTGCTGAAGGAGGCGCACCAGGCCGACGTGCGCATCTACGCCAGCCTCACCCGCCTCCACTTCCACGACTGCTTCGTCCAGAGGCAATGCTCAAAACCAGAGTGC
TGCAGTGCAGCCTGCCGCCAACCTTGATGAATTTCGGCGTCCACATTTGCCGCGACGCTGACACTAGATTCCGTACGTGTTTCCGTCGTGTGTGTCTCAGGGATGCGACGGGTCGATCCT
GCTGGACAACAGCACGAGCATCGTGTCGGAGAAGTTCGCGAAGCCGAACAACAACTCGGTGCGGGGGTACACGGTGGTGGACGCCGTCAAGGCGGCGCTGGAGGAGGCCTGCCCCGGCGT
CGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCAAGATCTCTGTCGAACTGTGGTACGCACGCTAGCTCATCGATCGGAAGTTCCGTGCTTAGCATACAACTTTTCACGCGCGCACCGT
GGCAATCAATTAAGCTTCCAGCAACGTGCATGCGGTAGCTAGCTACAGCCTGATCGAGCCTACTACATATGCCCGAGCCTGCAGCAATAATTTGGAAACCGTCGGTGCAAAATAATTCAG
CATGCCTGGAGAGATCCATCCATCGCCTGATTTCTTAGAGCACAGAACCTAGTACGAGTACGAAGTGGATATTCAGGCGTCACGTCGTGTCGGGCATCGGTCGATCGGCACCACCAGATA
TGTCGTATCACACCAAACCCACCTTTCCGTGTGGCGGCCGGCAGGCACTTTAATCCAACACGGGCACATGCATCATCAACTTTACACATCTCACTGGTCTCACATGCATGTTTGTACGCA
ATGCAGTCCGGAGGCCCCCGGTGGCGCGTCCCGCTGGGCCGGCGCGACGGCACCACGGCCAACCTCACGGCCGCGAACCACGTCCTCCCGAGCCCGCGCGACAACATCACCATGCTCCAG
CGCAAGTTCCGCGCCGTGGGCCTCGACGACACCGACCTCGTCGCCCTCTCAGAGGTAAACAACCCAACTCAACACCCGATCGAGATATTGGAACACAGAGAAAAAACGGCGCCCTTGACA
AAATTACTCTGTGAACTCCAGGGGCGCACACGTTCGGGCGGGCGCAGTGCCAGTTCGTGACGGACAGGCTCTACAACTTCAGCAAGACGGGGAAGCCGGACCCGACCATGGACGCGGGCT
ACCGGGTGCAGCTGGCCAGGAGCTGCCCGCGGCGGCACGGGAACAGGACGGCGCTCCGCGACCTCGACCCGGCCACGCCCGACGCCTTCGACAAGAGCTACTTCACCAACCTCCAGGCCA
GCCGCGGGTTCCTCCAGTCCGACCAGGAGCTGTTGTTGGCGCCCGGCGCGCCCACGGCGGCCATCGTCGCCCGCTTCGCCGGCAGCGAGAAGGCCTTCTTCAGGAGCTTCGCTTCGTCCA
TGGTCAACATGGGGAACATCAGGCCGCTCACGGGTGGCCAGGGAGAGGTCCGGAAGAATTGCTGGAAGGTTAATGGAAGCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGGCAATTCGTGCCGTCCTTCTGGGCATCGCCGTCGTGCTCGGCCTGGGCGGCGTCCCCGGCGGCGAGGCGCAGCTGGACGAGAAGTTCTACGACGGCTCGTGCCCGGGCGTGCAC
AGGATCGTGCGGCGGGTGCTGAAGGAGGCGCACCAGGCCGACGTGCGCATCTACGCCAGCCTCACCCGCCTCCACTTCCACGACTGCTTCGTCCAGGGATGCGACGGGTCGATCCTGCTG
GACAACAGCACGAGCATCGTGTCGGAGAAGTTCGCGAAGCCGAACAACAACTCGGTGCGGGGGTACACGGTGGTGGACGCCGTCAAGGCGGCGCTGGAGGAGGCCTGCCCCGGCGTCGTC
TCCTGCGCCGACATCCTCGCCGTCGCCGCCAAGATCTCTGTCGAACTGTCCGGAGGCCCCCGGTGGCGCGTCCCGCTGGGCCGGCGCGACGGCACCACGGCCAACCTCACGGCCGCGAAC
CACGTCCTCCCGAGCCCGCGCGACAACATCACCATGCTCCAGCGCAAGTTCCGCGCCGTGGGCCTCGACGACACCGACCTCGTCGCCCTCTCAGGGGCGCACACGTTCGGGCGGGCGCAG
TGCCAGTTCGTGACGGACAGGCTCTACAACTTCAGCAAGACGGGGAAGCCGGACCCGACCATGGACGCGGGCTACCGGGTGCAGCTGGCCAGGAGCTGCCCGCGGCGGCACGGGAACAGG
ACGGCGCTCCGCGACCTCGACCCGGCCACGCCCGACGCCTTCGACAAGAGCTACTTCACCAACCTCCAGGCCAGCCGCGGGTTCCTCCAGTCCGACCAGGAGCTGTTGTTGGCGCCCGGC
GCGCCCACGGCGGCCATCGTCGCCCGCTTCGCCGGCAGCGAGAAGGCCTTCTTCAGGAGCTTCGCTTCGTCCATGGTCAACATGGGGAACATCAGGCCGCTCACGGGTGGCCAGGGAGAG
GTCCGGAAGAATTGCTGGAAGGTTAATGGAAGCTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGGCAA TTCGTGCCGT CCTTCTGGGC ATCGCCGTCG TGCTCGGCCT GGGCGGCGTC CCCGGCGGCG AGGCGCAGCT GGACGAGAAG TTCTACGACG GCTCGTGCCC GGGCGTGCAC  AGGATCGTGC GGCGGGTGCT GAAGGAGGCG CACCAGGCCG ACGTGCGCAT CTACGCCAGC CTCACCCGCC TCCACTTCCA CGACTGCTTC GTCCAGGGAT GCGACGGGTC GATCCTGCTG  GACAACAGCA CGAGCATCGT GTCGGAGAAG TTCGCGAAGC CGAACAACAA CTCGGTGCGG GGGTACACGG TGGTGGACGC CGTCAAGGCG GCGCTGGAGG AGGCCTGCCC CGGCGTCGTC  TCCTGCGCCG ACATCCTCGC CGTCGCCGCC AAGATCTCTG TCGAACTGTC CGGAGGCCCC CGGTGGCGCG TCCCGCTGGG CCGGCGCGAC GGCACCACGG CCAACCTCAC GGCCGCGAAC  CACGTCCTCC CGAGCCCGCG CGACAACATC ACCATGCTCC AGCGCAAGTT CCGCGCCGTG GGCCTCGACG ACACCGACCT CGTCGCCCTC TCAGGGGCGC ACACGTTCGG GCGGGCGCAG  TGCCAGTTCG TGACGGACAG GCTCTACAAC TTCAGCAAGA CGGGGAAGCC GGACCCGACC ATGGACGCGG GCTACCGGGT GCAGCTGGCC AGGAGCTGCC CGCGGCGGCA CGGGAACAGG  ACGGCGCTCC GCGACCTCGA CCCGGCCACG CCCGACGCCT TCGACAAGAG CTACTTCACC AACCTCCAGG CCAGCCGCGG GTTCCTCCAG TCCGACCAGG AGCTGTTGTT GGCGCCCGGC  GCGCCCACGG CGGCCATCGT CGCCCGCTTC GCCGGCAGCG AGAAGGCCTT CTTCAGGAGC TTCGCTTCGT CCATGGTCAA CATGGGGAAC ATCAGGCCGC TCACGGGTGG CCAGGGAGAG  GTCCGGAAGA ATTGCTGGAA GGTTAATGGA AGCTAGCTAG GGAGTGATCG AGATACATAT GTACCATCCA CTATATATAT GATGCATACA ATCATGCATG TACCGATGTA CGTAGTTAAA 
ACTCTTTAAT TTATGAATTT GATTGCGATT TATGCACTAG 

Retrieve as FASTA