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Entry information : BdiPrx84 (Bradi2g38660)
Entry ID 7867
Creation 2011-01-14 (Toky Ramarohetra)
Last sequence changes 2011-01-14 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2014-01-08 (Qiang Li)
Peroxidase information: BdiPrx84 (Bradi2g38660)
Name (synonym) BdiPrx84 (Bradi2g38660)
Class Class III peroxidase    [Orthogroup: Prx109]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type Leaves
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiPrx84
start..stop		 S start..stop
HvPrx59 597 0 21..342 20..341
TaPrx06-1B 589 0 26..342 24..340
TaPrx06-1D 589 0 26..342 24..340
PedPrx02 574 0 22..341 23..342
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 38941910..38942125 214 N° 2 38944344..38945156 811  
join(38941910..38942125,38944344..38945156)


exon

Literature and cross-references BdiPrx84 (Bradi2g38660)
Literature Vogel,J.P., Gu,Y.Q., Twigg,P., Lazo,G.R., Laudencia-Chingcuanco,D., Hayden,D.M., Donze,T.J., Vivian,L.A., Stamova,B. and Coleman-Derr,D.
EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon.
Theor Appl Genet 113 (2), 186-195 (2006).
DNA ref. Phytozome 12:   Bd2 (38941910..38945156)
EST ref. GenBank:   DV485440.1 [5' end]  GT805661.1 [3' end]
Protein sequence: BdiPrx84 (Bradi2g38660)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   342 (318)
PWM (Da):   %s   36855.89 (34565.8) Transmb domain:   %s   i7-24o
PI (pH):   %s   6.78 (6.78) Peptide Signal:   %s   cut: 25 range:25-342
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MMTKAAAVAVVLVMAAAMAAEAMGGELKVGYYEKSCKGVENVVKY
HVAKAIKANRKNGAALVRLIFHDCFVRGCDASVLLDPTPENPSTEKTAPINIGLAAFELIDEIKAAVEERCPGTVSCSDILIYAAHDASSLLSNGHVTFPVLAGRLDGVHSHAAEAQQDLPDSTFTIAQLIHNFARKNFTVEELVIL
SGAHAVGVGHCSSLRARLTAPPTQILPAYRGLLARKCAAGPDPLVPNNIRDEDKAAVAAAIPGFVPKLRKVNDFLDNSYYHNNLARIVTFNSDWELLTEKEALGHVKEYAENGTLWDEDF
SDSLVKLSKLPMPHGSQGEIRKQCRYVNHH*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, intron 1). 2 ESTs. Cultivar="Bd21".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGACGAAGGCGGCCGCGGTGGCCGTGGTGTTGGTGATGGCGGCGGCGATGGCGGCAGAGGCGATGGGGGGTGAGCTGAAGGTTGGGTACTACGAGAAGAGCTGCAAGGGGGTGGAG
AACGTGGTGAAGTACCACGTGGCAAAGGCCATCAAGGCCAACCGCAAGAACGGCGCCGCACTCGTCCGCCTCATCTTCCACGACTGCTTCGTCAGGGGGTACGTACGCCGCTCCTCCGTC
CGTCATCGGGTTTTTTTTCCGGAACGGAAGAGATTCCTGGATCGATGCACACAATCGTTTTCATTGGCTAGCTCTGGCAAAACCAAGTCCTTGACATGTTAATGCCGTAGCACTAAGCTA
GGTTTGCACTGGTTTTTACTCATCGTTTAAATCTTCTACTACTCGAATTGAGAGCAACATTTTTGAACTGGTAAATCCATTAAGCACAGGAAGTAGCATCGTACCTCCTCTAGTACGGGG
TTAGCTAGCTAGCTAGCTAACAAGAGAGCAAAATTTTACACGTAACTGTGGACTACAACAAGCACGGGGATAGCTAGCTAACAAAAACAGAGTAAAGAAATTACAAGTCTCTCTCCAGGT
CCAGCAAAGGACTGTCAATCGATCTACACCGTACCACATGCATGCACAGTACTGACACTGGCCCACTGCCACTTAATTAGCGTTTGCATAGCTCGTGATCAAATGTGTTTGCTAGTCTTT
TCCTCTGATGCTGACATGCATAACTCTCTGGCTAATTCTCTCTGCTGTTCGGAAGGCTGCACGACACTAACAAAACTTTAGTTAACCGACTGTTATGAAAAAAATGGTCAATATATTCTA
ATGGCGCCAATGAACAAGTTGGAAGCTAGCACTGGTACTAGTAGATTATTATAGTACCAAAGCTACCAAACCATATCCAACAGATAAGCTAGCACGGTAGTACGTGTGTCACATTAATCT
AGCTAGCACGGAGAATGTGCATGGAAATTAAGAGCAGTAGCTGCACGGGCCTGCCGCGCGTAACTTTCAAAGTTGTTGGGTTTTTTCTTTCTTTCTTTCTTTCATGCGACGAATTTCAAA
ATTGTTGGTTCCCGCGTCATTGTCACGCCCAGATGTTAATCATGGAAGCACGTTACTCCCTCCTGCACTTTCAATGGCTGCTAGCTAAGCTAGCTTAGGCTTAAGCTCAAGCTAGAAATC
CAGAATATGATCCTCGAGAATCGTGCGCTGGTTGCTCACTCACTCCCAGCCAGGCGAGCATGGAGAGCAGAAAGGAATTCGATACTTTCCTTGGACGTGTAGAGAACTGGAGACCAATAA
TTTGACATGGCTAATTAGCTAGCTATGCGATATCTTTGGCTCTCTTCGACTCTTCCTCTGCTTTTCTTCCACGCGCATGTCCTTGTCTTTAATTTTTATTCTTTTCACTTCATATTACCG
ATCCCCCATGTGCCTGATGATGATGCGTCTTAAAGCCTTAGGAATCCGCAGTTATGTGTCGTACTCCTGTTAGGGATGCAGAATTAATTCCCCTGGCAAGTGTTTGATTGGATAATCTTT
AATTCCTCACAAAAAAAAATTGCACTAGATTACAACCTAGCTACGATGCAATGCAACAAATATTGTGATGCATGCGTATGAAGATTGCATGGGTGTAAGTATAATTTAAGCTGACACTCT
TACCGGTGCCGTTCATTAATTGTTTACATAGAGAGTTGATGAACTTTGCATGCATGCATGCATATGGGTGTAACATAATCCACTCTTTTGAGAGAACCTGCATAATTAAGATTATCTTGT
ATTGTGTATAAATATCCTGGTCTAGACGGACAGGAGCTGGTTAGCTTTTTTTATCATGTTCTTTTGCCACCAAAAGGAAACAAAAGAAAAAACGAGAGAGCTACTGTAAAGAGAAAGAGA
AAGCATACCTATACCAAGATCAATCATTCGTTGCACCAGTAGTGCTCAGTCCATCGCCCACACAAATGGTCAATAGAAAGCCCCCTAATACTATTTGTGTTTAAAGTAATTGATGAGTGA
ATTCCAGGTTGGAAAACATAACTGTTTTGTTTTTATATGGTCACATTATCGGTCCATAAGCATAGACAATTATTGCCCAATAATGCACCACATTGCAGACAATACATATGTACATCTCTT
TCCAACAACTAAAGTTAACCATCACGTTTCAGATCTCCACATGGAGTTAAAATAATTATCATTAGCAAAATGACTTCCCAACCGATCCATGCACACTTACAGTGTACTTACACGTCTCAG
TTAACAGTACTGTACTTAGGGAAATGAAATAAATGCTTTGTCTGCTAACAATATCTTGTTAAGTTAGGTTAAGAATTTATCATTGATGATTGATTAGGCAGCTCAAGCAGAGTGATCATA
TGGATAATTAATGTGCTGTACGTGCGTATCGTGCAGGGTTGTGACGCGTCGGTGCTGCTGGACCCGACACCTGAGAACCCATCGACGGAGAAGACAGCGCCGATCAACATCGGCCTCGCC
GCCTTCGAGCTCATCGACGAGATCAAAGCGGCGGTGGAGGAGCGGTGCCCGGGCACGGTCTCCTGCTCGGACATCCTCATCTACGCTGCCCACGACGCGTCGTCCCTCCTGAGCAACGGC
CACGTCACCTTCCCGGTCCTGGCGGGCCGCCTCGACGGTGTCCACTCCCACGCGGCGGAGGCCCAGCAGGACCTCCCCGACTCCACCTTCACCATCGCCCAGCTCATCCACAACTTCGCG
CGCAAGAACTTCACGGTGGAGGAGCTGGTGATCCTCTCGGGGGCCCACGCGGTGGGCGTGGGCCACTGCTCGTCGCTCCGGGCCCGGCTCACGGCCCCGCCGACCCAGATCCTCCCGGCC
TACCGGGGCCTCCTGGCCCGGAAGTGCGCGGCGGGGCCGGACCCGCTGGTGCCCAACAACATCCGGGACGAGGACAAGGCGGCGGTGGCGGCGGCGATCCCGGGGTTCGTGCCGAAGCTG
AGGAAAGTGAATGACTTCCTGGACAACAGCTACTACCACAACAACCTTGCCAGGATCGTCACGTTCAACTCCGACTGGGAGCTGCTGACGGAGAAGGAGGCGCTGGGGCACGTCAAGGAG
TACGCCGAGAACGGCACGCTGTGGGATGAGGACTTCTCTGACTCCCTTGTGAAGCTCAGCAAGCTGCCCATGCCCCATGGCAGCCAGGGAGAGATCAGGAAGCAATGCCGCTACGTCAAC
CACCACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGACGAAGGCGGCCGCGGTGGCCGTGGTGTTGGTGATGGCGGCGGCGATGGCGGCAGAGGCGATGGGGGGTGAGCTGAAGGTTGGGTACTACGAGAAGAGCTGCAAGGGGGTGGAG
AACGTGGTGAAGTACCACGTGGCAAAGGCCATCAAGGCCAACCGCAAGAACGGCGCCGCACTCGTCCGCCTCATCTTCCACGACTGCTTCGTCAGGGGTTGTGACGCGTCGGTGCTGCTG
GACCCGACACCTGAGAACCCATCGACGGAGAAGACAGCGCCGATCAACATCGGCCTCGCCGCCTTCGAGCTCATCGACGAGATCAAAGCGGCGGTGGAGGAGCGGTGCCCGGGCACGGTC
TCCTGCTCGGACATCCTCATCTACGCTGCCCACGACGCGTCGTCCCTCCTGAGCAACGGCCACGTCACCTTCCCGGTCCTGGCGGGCCGCCTCGACGGTGTCCACTCCCACGCGGCGGAG
GCCCAGCAGGACCTCCCCGACTCCACCTTCACCATCGCCCAGCTCATCCACAACTTCGCGCGCAAGAACTTCACGGTGGAGGAGCTGGTGATCCTCTCGGGGGCCCACGCGGTGGGCGTG
GGCCACTGCTCGTCGCTCCGGGCCCGGCTCACGGCCCCGCCGACCCAGATCCTCCCGGCCTACCGGGGCCTCCTGGCCCGGAAGTGCGCGGCGGGGCCGGACCCGCTGGTGCCCAACAAC
ATCCGGGACGAGGACAAGGCGGCGGTGGCGGCGGCGATCCCGGGGTTCGTGCCGAAGCTGAGGAAAGTGAATGACTTCCTGGACAACAGCTACTACCACAACAACCTTGCCAGGATCGTC
ACGTTCAACTCCGACTGGGAGCTGCTGACGGAGAAGGAGGCGCTGGGGCACGTCAAGGAGTACGCCGAGAACGGCACGCTGTGGGATGAGGACTTCTCTGACTCCCTTGTGAAGCTCAGC
AAGCTGCCCATGCCCCATGGCAGCCAGGGAGAGATCAGGAAGCAATGCCGCTACGTCAACCACCACTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGCATCGATC GCTATATAGC ACACACAACG CTCCCAACGC CTTCCATGAA CTGAGCACCG CACTACGGCC CAACACACGC CACCAACAAC AAACACACAC ACTTGCAACT AGCAGTGTGC  GTGTGCCGGC CACTAGCTAG CTAGTTCAAA ATCGAGCTAG GCAGCTCTTG AGCTAGCTCT CAGCTGCTTC AATTCTGTCG GTGGAGTTAA TTAATTGGCC GGAGAGGATG ATGACGAAGG  CGGCCGCGGT GGCCGTGGTG TTGGTGATGG CGGCGGCGAT GGCGGCAGAG GCGATGGGGG GTGAGCTGAA GGTTGGGTAC TACGAGAAGA GCTGCAAGGG GGTGGAGAAC GTGGTGAAGT  ACCACGTGGC AAAGGCCATC AAGGCCAACC GCAAGAACGG CGCCGCACTC GTCCGCCTCA TCTTCCACGA CTGCTTCGTC AGGGGTTGTG ACGCGTCGGT GCTGCTGGAC CCGACACCTG  AGAACCCATC GACGGAGAAG ACAGCGCCGA TCAACATCGG CCTCGCCGCC TTCGAGCTCA TCGACGAGAT CAAAGCGGCG GTGGAGGAGC GGTGCCCGGG CACGGTCTCC TGCTCGGACA  TCCTCATCTA CGCTGCCCAC GACGCGTCGT CCCTCCTGAG CAACGGCCAC GTCACCTTCC CGGTCCTGGC GGGCCGCCTC GACGGTGTCC ACTCCCACGC GGCGGAGGCC CAGCAGGACC  TCCCCGACTC CACCTTCACC ATCGCCCAGC TCATCCACAA CTTCGCGCGC AAGAACTTCA CGGTGGAGGA GCTGGTGATC CTCTCGGGGG CCCACGCGGT GGGCGTGGGC CACTGCTCGT  CGCTCCGGGC CCGGCTCACG GCCCCGCCGA CCCAGATCCT CCCGGCCTAC CGGGGCCTCC TGGCCCGGAA GTGCGCGGCG GGGCCGGACC CGCTGGTGCC CAACAACATC CGGGACGAGG  ACAAGGCGGC GGTGGCGGCG GCGATCCCGG GGTTCGTGCC GAAGCTGAGG AAAGTGAATG ACTTCCTGGA CAACAGCTAC TACCACAACA ACCTTGCCAG GATCGTCACG TTCAACTCCG  ACTGGGAGCT GCTGACGGAG AAGGAGGCGC TGGGGCACGT CAAGGAGTAC GCCGAGAACG GCACGCTGTG GGATGAGGAC TTCTCTGACT CCCTTGTGAA GCTCAGCAAG CTGCCCATGC  CCCATGGCAG CCAGGGAGAG ATCAGGAAGC AATGCCGCTA CGTCAACCAC CACTAGCTAG CTGCAGCTTC TTCATTTTCG ATCTGCCGCT GAGGTTTAAT TTCCCTGGAT TAGTTAATTA  AATTGCATCG TCGTCGTTCA TGTCGCTCGA ATTTGATCAT TCGTTTGTTG TTATGTTTTA TTCTCCTTTT TTCTCTTGTT TCTTTTTTTG CGTGTGTGTG ATATTGATTT CTTTTCATGT 
ATGGTCTTTT AATCCGCTTG GAGTACCATC CAGATCATGT AATAAGAACA CAAACAAATT AATGAAGTAA ATTTTATATG TTGTTCCTCT TGTGAA 

Retrieve as FASTA