View Redoxidase 7915

Entry information : BdiPrx96 (Bradi3g09080)

Entry ID	7915
Creation	2011-01-17 (Toky Ramarohetra)
Last sequence changes	2011-01-17 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2014-01-08 (Qiang Li)

Peroxidase information: BdiPrx96 (Bradi3g09080)

Name (synonym)

BdiPrx96 (Bradi3g09080)

Class

Class III peroxidase [Orthogroup: Prx138]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium

Organism

Brachypodium distachyon [TaxId: 15368 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BdiPrx96 start..stop	S start..stop
TaPrx81-1B	529	0	18..322	21..325
TaPrx81-1D	528	0	18..322	21..325
TaPrx81-1A	528	0	18..322	21..325
SofPrx08	478	1.63e-171	20..322	22..324

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7915' 'join(7186250..7186468,7186579..7186770,7187100..7187657)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	7186250..7186468	217	N° 2	7186579..7186770	190	N° 3	7187100..7187657	556
join(7186250..7186468,7186579..7186770,7187100..7187657)

Literature and cross-references BdiPrx96 (Bradi3g09080)

DNA ref.	Phytozome 12: Bd3 (7186250..7187657)
EST ref.	GenBank: DV481478.1 [Fragment] DV483889.1 [Fragment]

Protein sequence: BdiPrx96 (Bradi3g09080)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	322 (296)
PWM (Da):	33396.81 (30879.3)	Transmb domain:	i7-26o
PI (pH):	8.4 (7.98)	Peptide Signal:	cut: 27 range:27-322

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAAMRRVLVAAVALATASLLVPAAVAQLSPSFYGASCTSLESIVR
SGMVSAVQSEPRMGASILRLFFHDCFVNGCDASVLLDDSSTLTGEKNAGPNANSLRGYEVIDAIKSRVEAACPGTVSCADILAVAARDGVNLLGGPTWAVPLGRRDARTTTQQAANANLPSPSSAIGTLISSFASKGLDSQDLVALSG
GHTIGAARCASFRSRVYNDSNILAGFAQRRRQVCPAQGPNGDGNLAPLDAFSSVKFDNGYFRNLQGRFGLLHSDQELFNGGPVDSIVQRYARDGGAFAGDFVNAMIKMGNISPLTGANGE
IRANCRKPN*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 3, intron 1 & 2), 2 ESTs. Cultivar="Bd21".

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCAGCGATGAGGAGAGTGTTGGTGGCCGCAGTAGCGCTGGCCACGGCCTCGCTGCTCGTCCCCGCCGCCGTGGCTCAGCTCTCGCCGTCGTTCTACGGCGCCAGCTGCACGAGCCTG
GAGTCCATCGTGCGGTCGGGGATGGTTTCCGCTGTCCAGAGCGAGCCCCGGATGGGCGCCTCCATACTCCGCCTCTTCTTCCACGACTGCTTCGTCAACACGTACGCACATACATACTCT
CTGCTCCCTCGATCAAAAACTCTTCCTTGCTACTCTGCTCTGTAGTCTGTACTCATTGGAATGGCCTGGGGGCATCCATCGATTTTGGCAGGGCTGCGACGCGTCGGTGCTGCTGGACGA
CTCGTCGACGCTGACGGGGGAGAAGAACGCCGGGCCGAACGCCAACTCGCTGCGCGGCTACGAGGTGATCGACGCCATCAAGTCCCGGGTCGAGGCAGCCTGCCCCGGCACCGTCTCCTG
CGCCGACATCCTCGCCGTCGCCGCCCGCGACGGCGTCAACCTGTGGTGAGTGTCAGCGCGAGCGCGAACTTATTACCGTGCATCATTGCCCCCACCAGTCAAAATACATATGGATTTACC
GTACGTCATCCTGCCGACACCCAGTACAACGAACTCGCTGTCCGAAAAAAAAAAGGTTTGCTCCATTTCTAACAACCGCGCATGCACGCGCGACAAATTAGTCCGCACACGTTCTCTGAC
ACGTGGGCCGGGTTTCTTTCCGCAACCGCCTGCACTTTCTCTGGTGGATCTCATTCTCATGAGAATGGCACCGCTGCTGGCTGTGTCTATCAATTTGTTCACATGACAACGATGACGACG
TTGTAATAATGCAGCTAGGTGGGCCGACTTGGGCGGTGCCGCTGGGCCGGCGCGACGCGCGGACGACGACGCAGCAGGCCGCGAACGCCAACCTACCCTCGCCGTCATCGGCAATCGGCA
CGCTCATCTCGTCGTTCGCGTCCAAGGGGCTCGACAGCCAGGACCTGGTGGCGCTGTCGGGCGGGCACACGATCGGCGCGGCCCGGTGCGCGAGCTTCCGTTCCCGCGTGTACAACGACA
GCAACATCCTGGCCGGGTTCGCGCAGCGGCGGCGGCAGGTGTGCCCGGCCCAGGGGCCCAACGGCGACGGCAACCTGGCCCCGCTGGACGCCTTCAGCTCCGTCAAGTTCGACAACGGCT
ACTTCCGCAACCTGCAGGGCCGCTTCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAACGGCGGGCCCGTCGACTCCATCGTGCAGCGGTACGCGCGCGACGGGGGCGCCTTCGCGGGCG
ACTTCGTCAACGCCATGATCAAGATGGGCAACATCAGCCCGCTCACGGGAGCCAACGGCGAGATCCGGGCCAACTGCAGGAAACCCAACTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GAGGCAGGGG CCTGGCCGGA GCTCTCGCTA TACTGCCATT AGCCAGTAAG AGCTTGCAAT GGCAGCGATG AGGAGAGTGT TGGTGGCCGC AGTAGCGCTG GCCACGGCCT CGCTGCTCGT CCCCGCCGCC GTGGCTCAGC TCTCGCCGTC GTTCTACGGC GCCAGCTGCA CGAGCCTGGA GTCCATCGTG CGGTCGGGGA TGGTTTCCGC TGTCCAGAGC GAGCCCCGGA TGGGCGCCTC CATACTCCGC CTCTTCTTCC ACGACTGCTT CGTCAACGGC TGCGACGCGT CGGTGCTGCT GGACGACTCG TCGACGCTGA CGGGGGAGAA GAACGCCGGG CCGAACGCCA ACTCGCTGCG CGGCTACGAG GTGATCGACG CCATCAAGTC CCGGGTCGAG GCAGCCTGCC CCGGCACCGT CTCCTGCGCC GACATCCTCG CCGTCGCCGC CCGCGACGGC GTCAACCTGC TAGGTGGGCC GACTTGGGCG GTGCCGCTGG GCCGGCGCGA CGCGCGGACG ACGACGCAGC AGGCCGCGAA CGCCAACCTA CCCTCGCCGT CATCGGCAAT CGGCACGCTC ATCTCGTCGT TCGCGTCCAA GGGGCTCGAC AGCCAGGACC TGGTGGCGCT GTCGGGCGGG CACACGATCG GCGCGGCCCG GTGCGCGAGC TTCCGTTCCC GCGTGTACAA CGACAGCAAC ATCCTGGCCG GGTTCGCGCA GCGGCGGCGG CAGGTGTGCC CGGCCCAGGG GCCCAACGGC GACGGCAACC TGGCCCCGCT GGACGCCTTC AGCTCCGTCA AGTTCGACAA CGGCTACTTC CGCAACCTGC AGGGCCGCTT CGGCCTGCTC CACTCCGACC AGGAGCTCTT CAACGGCGGG CCCGTCGACT CCATCGTGCA GCGGTACGCG CGCGACGGGG GCGCCTTCGC GGGCGACTTC GTCAACGCCA TGATCAAGAT GGGCAACATC AGCCCGCTCA CGGGAGCCAA CGGCGAGATC CGGGCCAACT GCAGGAAACC CAACTAAAGG ACGGACACAC CGATGGCATC GAGATTCATG GTCGGGACGT CGGGTCGCTT GACATCGCCA GCTAGTAATT AAGATGGAAC ATTTTGCGAG ATGCGTGGCT TTTTTCTCTG GTGTGGCTGG CGCGAGACGG TGGAGTGCGT GTGAAGGCAA GGGTTGTGAC GAAATAATTA GGTGGAGTGG CGCTGTCAAG TTGAGGAGAA GGGGGCTAGC TAGCTCGTGC GTGCATGCAT GCATTGTCGC GGCCGGCGAC ACGTACATCA CGGGCGGCAC CGCACCACCT ATTGGCATCG GCATTTGCTT CGTTGATTAT TTGGTTGCAT TCTTTTTTTG TACCATATGA TGATGGTTAT AGTTTCAGAT GAACGATGAT TGTTTTGCAA GGGAACACAT GAATAATAAA CGCACTGTAT
GTCCAT

Retrieve as FASTA