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Entry information : SbPrx[P]08
Entry ID 7932
Creation 2011-01-19 (Toky Ramarohetra)
Last sequence changes 2014-08-05 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2014-08-05 (Christophe Dunand)
Peroxidase information: SbPrx[P]08
Name SbPrx[P]08
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx[P]08
start..stop		 S start..stop
OsPrx125 224 5.5e-74 1..176 99..283
ZmPrx34 217 3.32e-71 2..176 101..284
SiPrx152 212 3.95e-69 1..176 99..283
SiPrx149 210 2.09e-68 1..176 101..289
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 47036011..47036136 124 N° 2 47037868..47038028 159 N° 3 47039484..47039727 242  
join(47036011..47036136,47037868..47038028,47039484..47039727)


exon

Literature and cross-references SbPrx[P]08
DNA ref. Phytozome 12:   chromosome_1 (47036011..47039797)
Protein sequence: SbPrx[P]08
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   176
PWM (Da):   %s   19059.16  
PI (pH):   %s   4.72
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
PPNNKSARGFPAVDAAKAALEDACPAVVSCESAIAAEISVELLGGPSWGVLLGRLDSKTSDYNGSLNHTAPTDNLTIFSYVQQPQPQRCRPCRPFSECQSVVNRLYNFSNTGLLDPTMDF
ANLEFLSQRCPRNGNGSALNDVDPTTPDTFHTNHYYTNIEVNRGFLNSDQELKSSP

Retrieve as FASTA  
Remarks Pseudogene from genomic (chromo 1). Part of exon 2, 3 and 4 including several frame shift.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCGCCCAACAACAAATCGGCGCGTGGGTTCCCGGCGGTGGACGCCGCCAAGGCCGCGTTAGAGGACGCCTGCCCTGCGGTTGTCTCCTGCGAGTCNGCCATCGCCGCTGAGATCTCCGTC
GAGCTGTGGTACGTACACGTACGTACCTGCATGCATGCAGTGCAGCGATACAAAATTCATGGCATATACATGAAGCAATACTGTGATAGTATAGAGGACGTAGCGGTAGCCGGTAGCTGC
ACCATGGCTTTCAAATTAAGGGGCATGCATAGTGATTTAACCGTTAACAGCATGCAATTACTTCATTATTGGCACCTTTTCGTTTAATTTGGAGGATGAATGATTTGATGGGCGCCCACA
CGGTGCATATTGCTGTGCTATAGTAACATGTCATGTCAGGTCGTTTTTCATGATTATATATGCATGGTTCTGGTATGTACACCTTCGATAACAAAAAGCGTCAAAATATTTCTAGTGAAA
TGACGTCAATATTTTTAAAAAACAATTTGGATTTGTTTGAATTTCGTCCGATATTAATGAAATTTCGTATTTACACTAGTAAAAAAAGCACTACGCTTGCGGTGGAATATAATTTGTACA
GGCGGTTCGAATTAAACAGCATTTGTGGAGAGAAATCTTGCCCGACTAAAAAAACCGCCTGTGAAAATCAATTTTCACCGACGGTTTTCCTAACAAAACCACCAATAGAAATCATCTATT
TCTGCATACGGTTCTCCTAAGAAACCGCCAGTGAAAATCGTATTTCCATTGGCGGTTTCTTAAAAAATGCCTGTAGAAATAATTTGAAATTGAATTTTTTGAGCTTTTCAAATGACCTCT
TTTAGAAAAACCGTCAAAATGAAAGTTGTAGTTCTCGAAAAGTTATGAAACTTTGTAGTTGATAAGTTTTCCATTTGAAATCATCTTGTCGTCGAAAACTACGTTTGAATTTCTCAAATT
TGAAATTCAAATTTTGTAAATGACCTCGTATGGAGAAATTACCAATATAAAAGTTGTAGATCTTGAAAAGTTGTGAAACTTTGTAACTGGCAATTTTTTCACTGGAATCCGTTTAGGGCC
TTAAATAATCAATATATGCTCGGTTTAGGATAATATGTGGGGAACGAAACTGTAATATAGACACAATTAAGTGATAGGTGGAGTGGTAGAGGAGGCTACGCGCGAGGGCGAGATCTCAGG
TTTGAATCCCACCAGCCAGCCGTGTAGCACGTGATTTTACGCGAAACAATGCGCGACTTGCGACTTCCCTATAATTTATTTTTTTCTATTTTTAAAAGCCGATTTTGTATTTTGTATAAA
AAAATTTCTAACGGTTGACATAACTGAACCGTCTGTAGAAATACATTTGCATTAACGGCTCTCAATTACCCGCCTGTGGAAAAAATATTTCTACAGACACCCAGCACAGGCTCTCAGTTA
ACCGCCTATGTAGTGGTTCTGTGTACTAGTGTTATTTGCTAGGTGATAAAACTTCTTTTTTTAGAATTACAATGCAGATCGCTTAATACGCACGCACACTCATTCTTATAGACGTGTAAA
TAAACTCTACTTTATGAACACCTCCTAAATACTATATACACCCTGCCGTCAAGTCCAAACACCTCCTAAATACTATATACACCCTGCCGTCAAGTCCAAAGAGAAGGATATAGCAAGTAG
GTAGGATCTTCCTGGCAATGGTAGTAAGTGTGGGACAAGGTTACAATGAGAGGCAATGGTAGATACAAGGTCACATTCATCCATTACTTGTTCCCTGTGATTGCACATGCATCAACAACA
CCAAACAAGGAAATACTATAGGATCAATTAACTTCCTAGCAACGTTTAATAACATGCAGTTGGGAGGCCCAAGTTGGGGTGTGCTTCTGGGAAGGCTGGACAGCAAGACCTCCGACTACA
ACGGATCCCTGAACCACACAGCGCCCACCGACAACCTCACCATCTTCAGCTATGTTCAGCAACCTCAGCCTCAACGATGTCGACCTTGTCGCCCTTTCAGAGGTACCTACAAATCCATAA
ACTTGATGCCCTCTCAGCTGGTATCGTCTATTCACTTGATTTTTGTTGTGAAAACGACAGGGGGGCACACGTTTGGCCGTGTACAATCACTACGAGATACTGGTACTTTGCTGAGTGTTT
GTAGCACTCGGCAAAGGTCCAAATACATTTAGCCTCGGCAAAAACCACACGGCAAAATTTTAGTCGGCAAAGAGATCTTTTATCGAGTGTTATTTTTCGTGCACTCGATAAAGCCTTTGC
CGAGTGTCCGACACTCGGTAAGGATAGAAACGAAAAAAATTCAAAAAAATCTGAAAAATAGGGAACAAAAAGAATATTTTTTCGCAGGAGGCCTGCGCCCACCTGACTCTATGTGCTGCT
CAAGTTTCAGAATTTTTGTGGCTTTGCGGCCAATGGAATTCAAACTCGTGACCTCTTTTGTCACGTGTCTCCCTCCTTAATCACTACACCACACTATCACTTATACACTATCACTTATGT
CTATATTACATTTCGGTTCCTCATATATTATATCAAATCACATATAAATTGATTATTTTGATATTCTAAACGATTGCAAATTAAAAAGTTGTCAACTATAAAGTTTTATAACTTTTCGGG
ACCTACAATTTTAATTTAGGGAGTTTCTCCATCCGAGGTCGTTTACAAAATTTGAATTTTAAATTTGAGAAATTCAAACGTAGTTTTTGTATCACAAGATGATTCCAAAACAAAAAGTTG
TCAACTATAAAGTTTTATAACTTTTTGAGATCTACAAAGTTTATTTAGGGAGTTTTTCCATCTGAGGTCATTTGAAAAATTCGAATTTTAAAATTTTCAATTAAAGACGTAGTTTTGCAT
GACAAGATGAACTCAAATAAAAAAGTTGGCACATACAAAAATTTCATAACTTATCAAGACCTATAAAGTTTATTTTGGTTGTTTTGTCATTTGCTCATCCGACATAGTGATTCTAATATT
TTTCATAAATCTTATATATATCTCTTATAGTTTCATAAACTATATGAGAGATATGTAAAATTTATGAACAAATTTATTCGACTTTGTCAAATAAAAAAATAACCAAAATAAATATTGTAA
ATCTTGAAAAGTTATAGAACTTTGTAGTTAATTTTTTTATTTGAATTCATTTAGGGCTTCAAAATTCAAATTAAAATTTTCTTTGCTGAGTGTTTTTTTGACACTCGGCAAAGAAGGTCT
TTGCCGAGTGTAAAAAAAGCACTCAACAAAGAAGTTTCTTGTCAAGTGTCAAAAAAACACTCGGTAAAGAAAGTCTATACCGAGTGTTTTTCTACATTCGGCAAAGAAACCTCTTTGCCG
AGTATTTTTTTCCGATTGTTTTTCTTTGGCACTCGACAAAGAGCTTCTTTGCCGAGTGCTTGAAAGAAAACACTCGGCAAAGCGCTTAACACTTGGCAAAGACCTGGATTTCGATAGTGA
ATGCCAATCCGTAGTGAACCGGCTCTACAACTTCAGCAACACAGGCCTGCTGGACCCAACCATGGACTTTGCTAACCTTGAGTTCCTGTCACAGAGGTGTCCAAGGAACGGCAACGGCTC
GGCGCTGAACGATGTCGATCCAACCACTCCAGACACCTTCCACACNAACCACTACTACACCAACATCGAAGTGAACCGGGGTTTCCTCAACTCCGATCAGGAGCTCAAGTCATCGCCCTA
G

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCGCCCAACAACAAATCGGCGCGTGGGTTCCCGGCGGTGGACGCCGCCAAGGCCGCGTTAGAGGACGCCTGCCCTGCGGTTGTCTCCTGCGAGTCNGCCATCGCCGCTGAGATCTCCGTC
GAGCTGTTGGGAGGCCCAAGTTGGGGTGTGCTTCTGGGAAGGCTGGACAGCAAGACCTCCGACTACAACGGATCCCTGAACCACACAGCGCCCACCGACAACCTCACCATCTTCAGCTAT
GTTCAGCAACCTCAGCCTCAACGATGTCGACCTTGTCGCCCTTTCAGTGAATGCCAATCCGTAGTGAACCGGCTCTACAACTTCAGCAACACAGGCCTGCTGGACCCAACCATGGACTTT
GCTAACCTTGAGTTCCTGTCACAGAGGTGTCCAAGGAACGGCAACGGCTCGGCGCTGAACGATGTCGATCCAACCACTCCAGACACCTTCCACACNAACCACTACTACACCAACATCGAA
GTGAACCGGGGTTTCCTCAACTCCGATCAGGAGCTCAAGTCATCGCCCTAG

Retrieve as FASTA