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Entry information : SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Entry ID 7999
Creation 2011-02-09 (Toky Ramarohetra)
Last sequence changes 2011-03-03 (Nizar Fawal)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-04-28 (Christophe Dunand)
Peroxidase information: SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Name (synonym) SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Class Ascorbate peroxidase    [Orthogroup: APx2004]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx09
start..stop		 S start..stop
ZmAPx10 688 0 1..351 1..351
SiAPx04 630 0 1..351 1..353
OsAPx10 570 0 1..351 1..348
TaAPx08-1B 559 0 1..351 29..377
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 56404707..56404802 94 N° 2 56404894..56405010 115 N° 3 56405308..56405392 83 N° 4 56405489..56405523 33
N° 5 56405617..56405682 64 N° 6 56405763..56405802 38 N° 7 56405939..56406064 124 N° 8 56406182..56406288 105
N° 9 56406427..56406564 136 N° 10 56406720..56406854 133 N° 11 56406943..56407053 109  
join(56404707..56404802,56404894..56405010,56405308..56405392,56405489..56405523 ,56405617..56405682,56405763..56405802,56405939..56406064,56406182..56406288,564 06427..56406564,56406720..56406854,56406943..56407053)


exon

Literature and cross-references SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
DNA ref. Phytozome 12:   Chr06 (56404721..56407067)
Protein sequence: SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   351 (314)
PWM (Da):   %s   38137.48 (33359.7) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.1 (5.34) Peptide Signal:   %s   cut: 26 range:26-339
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGASFLSTAPLVARGVAACSSISTPTRRHPHIRVCCRADAEGSEAAAHEERLRFRRRDFIGTCVGSAIGLELIDGSTRFSGVATAADLIERRQRSEFQSKIKDTLYVAIAKPELVPSLLTLALNDAMTYDKATKTGGANGSIRLETSRPEN
SGLSAALDLLTEAKKEIDSFSKGGPISFADLIQFAAQSALKRSFLDAAIAKCGGNEEKGRTLYSAYGSNGWGLFDRTFGRADAQEADPEGRVPEWSKASVQEMKDRFVAVGLGPRQLAVM
SAFLGPDQAATEERLIADPDCRPWVEKYQRSRETVSRTDYEVDLITTLTKLSSFGQNINYEAYTYPKQKIDLGKLKL*

Retrieve as FASTA  
Remarks Complete sequence from genomic. 6 ESTs. cultivar="BTx623"
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGAGCGAGCTTCCTCTCGACCGCGCCGCTCGTTGCCCGCGGCGTCGCTGCCTGCTCTTCCATTTCGACTCCGACGCGGAGGCACCCGCACACGTACGTACGCCCCCCGAACTTA
CTGTTTTGCCCGTGCAGATTCCATTTCAGCTCCGACGTAATCGCGTGATCCTTGGTTTTGCCTGCGCAGATTCGAGTTTGCTGCCGGGCTGACGCTGAGGGCTCGGAGGCTGCTGCTCAT
GAAGAGCGTCTGCGATTCCGCCGGAGAGATTTCATTGGCACCTGCGTCGGGAGCGCCATTGGTTTGTGGTAAGTGGTAGTGCTACCATCCTGACAAAAGAACAATGCCCTTGTGCATTGG
TGTTACAGAAGTAAACAAATGTAGCATTATGGGAGAGCTTCAAGTTGTTGCCCCAGCAAACTTTTTATCTCAGCTGCATCTAGTCACGCTCGAACTTATGCTGATGCTGAAAAGTATTAT
TCGCTAATTTGTTCTGAGAGGAAAACAATGTACAAATGTGGTTATACTGTTTTAAGAGGAAAGACACCTTTTGTCTCAGTTCAGAGGTGATAAGCTGAACTTCGTTTATTTATGTCTTGG
GTTAGGAATTGATCGACGGTTCTACAAGATTCTCTGGAGTGGCTACTGCAGCTGATCTCATTGAGCGTAGACAACGGTCGGAGTTCCAGTGTGTAGGTCATCTCATATTGTTAGTTCCAT
TGGCCCACTTGAATGCTAATGTTTCATTCTCACCATCGAAATTGAAGTCTTTTGACTGTTTTTTGCAGCAAAAATCAAAGATACGCTCTACGTAGCCATAAAGAGGTGAGACGCCTTAGT
TTGTTGTACCTGGTGTTTTTCTTTCATCTATCTATCACTTCTGTTGCCTGAAACTGTGAACCTGATAATCTTTTGAAGGCTAAGCCAGAGCTCGTTCCATCATTGTTGACCTTGGCACTG
AATGATGCCATGACATATGACAAGAGGTCTGGTATCTGAATGGCTTTATATCATTAGCATTTGGGTCCCTCTGTTGGTTTAGAGAGTTGGTTTAATTCTTCTGCAGGCCACAAAAACTGG
AGGAGCAAATGGGTCTATCAGGCTAGAGGTAGCAATTTCTTTTTCCTTTTCTCTTCTTCAGTTCTTCAGTTTGTTTTTTGTTTTGAGAGAAGAAAATGTTCAGCTGGAGATAATCCGTTG
CGTTGCTCCACCATTTAATACTTAATTTTTCAAATAAAGCCCAGAAACAAGCAGACCTGAAAACAGTGGGCTCTCTGCTGCATTGGATTTGCTGACTGAAGCCAAAAAGGAGATAGATTC
CTTTTCCAAGGGAGGTCCCATTTCATTTGCAGATCTGATCCAGTTTGCAGAGGTTCGACAATTTCCAGTGCAGTTTTACTACCATTATGAAACTTGTTGATCTTTACTGGCAAGCTCTTC
CGTATATTGGCTTGTTTTAAATTAAGAATTTTGTTTTTTCTTGAAACAGCACAATCAGCACTGAAGAGATCATTTCTTGACGCGGCCATTGCCAAATGTGGTGGAAATGAAGAGAAGGGA
AGAACCCTATACTCTGCATATGGTTCAAATGGGCAGAGGTATGTACTGTGCCACATTGCTCCTTATGTCACATGATGCTTCATATGTTCAGTATACACTCTGTACAAGCTGCTCCTTATT
TAACGTTTAAAATTATATTTTTTCTCTACGTTTGTTTTGACTATTTGCAACCACAGTGGGGTCTGTTCGATAGAACATTCGGGAGAGCAGATGCACAGGAAGCAGATCCAGAGGGAAGAG
TGCCTGAGTGGAGCAAAGCTTCTGTGCAGGAGATGAAGGATAGGTTCGTCGCTGTTGGGCTGGGTCCTCGCCAGAGGTTACTACTACCACATCCTTATTAGATTGCTGAAATAAATTAAC
TGTCTTAACTTATCTCATTATTGTCATGACCATGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAAACCATGAACCAGTCTCACGTTTAATAGAAGATGGCTCTTTTTGCAGCTTGCTGTT
ATGTCAGCATTCCTTGGACCTGACCAGGCTGCTACCGAGGAACGACTGATAGCTGATCCAGATTGCCGTCCATGGGTGGAGAAGTACCAGCGGAGCCGCGAGACTGTCTCCCGGACTGAC
TACGAAAAGTATGATTCATTGATGCGTATGTGCTGGCAATGCTCGGTATATCTTCTAGTGTTTATTCTAACTTGTGCTTATTTGTCTGTATGGCAGGTTGACCTGATTACCACACTCACA
AAGCTGAGCTCCTTCGGCCAGAACATAAACTATGAAGCCTACACATACCCTAAGCAAAAGATTGACCTGGGCAAATTGAAACTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGAGCGAGCTTCCTCTCGACCGCGCCGCTCGTTGCCCGCGGCGTCGCTGCCTGCTCTTCCATTTCGACTCCGACGCGGAGGCACCCGCACATTCGAGTTTGCTGCCGGGCTGAC
GCTGAGGGCTCGGAGGCTGCTGCTCATGAAGAGCGTCTGCGATTCCGCCGGAGAGATTTCATTGGCACCTGCGTCGGGAGCGCCATTGGTTTGGAATTGATCGACGGTTCTACAAGATTC
TCTGGAGTGGCTACTGCAGCTGATCTCATTGAGCGTAGACAACGGTCGGAGTTCCAGTCAAAAATCAAAGATACGCTCTACGTAGCCATAAAGGCTAAGCCAGAGCTCGTTCCATCATTG
TTGACCTTGGCACTGAATGATGCCATGACATATGACAAGGCCACAAAAACTGGAGGAGCAAATGGGTCTATCAGGCTAGAAACAAGCAGACCTGAAAACAGTGGGCTCTCTGCTGCATTG
GATTTGCTGACTGAAGCCAAAAAGGAGATAGATTCCTTTTCCAAGGGAGGTCCCATTTCATTTGCAGATCTGATCCAGTTTGCAGCACAATCAGCACTGAAGAGATCATTTCTTGACGCG
GCCATTGCCAAATGTGGTGGAAATGAAGAGAAGGGAAGAACCCTATACTCTGCATATGGTTCAAATGGGCAGTGGGGTCTGTTCGATAGAACATTCGGGAGAGCAGATGCACAGGAAGCA
GATCCAGAGGGAAGAGTGCCTGAGTGGAGCAAAGCTTCTGTGCAGGAGATGAAGGATAGGTTCGTCGCTGTTGGGCTGGGTCCTCGCCAGCTTGCTGTTATGTCAGCATTCCTTGGACCT
GACCAGGCTGCTACCGAGGAACGACTGATAGCTGATCCAGATTGCCGTCCATGGGTGGAGAAGTACCAGCGGAGCCGCGAGACTGTCTCCCGGACTGACTACGAAGTTGACCTGATTACC
ACACTCACAAAGCTGAGCTCCTTCGGCCAGAACATAAACTATGAAGCCTACACATACCCTAAGCAAAAGATTGACCTGGGCAAATTGAAACTGTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTTATCCTCG CGAGCTACTG CCGCACCAGC CTGCGAGCCT CCATTGAGAG CGCTCAACCA GCCATTGAGA GCGTCAGAGG TCAGTAGAGA AATGGCGGGA GCGAGCTTCC TCTCGACCGC  GCCGCTCGTT GCCCGCGGCG TCGCTGCCTG CTCTTCCATT TCGACTCCGA CGCGGAGGCA CCCGCACATT CGAGTTTGCT GCCGGGCTGA CGCTGAGGGC TCGGAGGCTG CTGCTCATGA  AGAGCGTCTG CGATTCCGCC GGAGAGATTT CATTGGCACC TGCGTCGGGA GCGCCATTGG TTTGGAATTG ATCGACGGTT CTACAAGATT CTCTGGAGTG GCTACTGCAG CTGATCTCAT  TGAGCGCAGA CAACGGTCGG AGTTCCAGTC AAAAATCAAA GATACGCTCT ACGTAGCCAT AAAGGCTAAG CCAGAGCTCG TTCCATCATT GTTGACCTTG GCACTGAATG ATGCCATGAC  ATATGACAAG GCCACAAAAA CTGGAGGAGC AAATGGGTCT ATCAGGCTAG AAACAAGCAG ACCTGAAAAC AGTGGGCTCT CTGCTGCATT GGATTTGCTG ACTGAAGCCA AAAAGGAGAT  AGATTCCTTT TCCAAGGGAG GTCCCATTTC ATTTGCAGAT CTGATCCAGT TTGCAGCACA ATCAGCACTG AAGAGATCAT TTCTTGACGC GGCCATTGCC AAATGTGGTG GAAATGAAGA  GAAGGGAAGA ACCCTATACT CTGCATATGG TTCAAATGGG CAGTGGGGTC TGTTCGATAG AACATTCGGG AGAGCAGATG CACAGGAAGC AGATCCAGAG GGAAGAGTGC CTGAGTGGAG  CAAAGCTTCT GTGCAGGAGA TGAAGGATAG GTTCGTCGCT GTTGGGCTGG GTCCTCGCCA GCTTGCTGTT ATGTCAGCAT TCCTTGGACC TGACCAGGCT GCTACCGAGG AACGACTGAT  AGCTGATCCA GATTGCCGTC CATGGGTGGA GAAGTACCAG CGGAGCCGCG AGACTGTCTC CCGGACTGAC TACGAAGTTG ACCTGATTAC CACACTCACA AAGCTGAGCT CCTTCGGCCA  GAACATAAAC TATGAAGCCT ACACATACCC TAAGCAAAAG ATTGACCTGG GCAAATTGAA ACTGTAAAGA TATTTGCCAG GCACCTGCAT CGGCCATACC CAGGATTCAG GAGCTCATAA  TATGGTAGGC TCTGGCTGCT AAAGAGTGAT TTGATTCGGC ACTGACGTTC ATGTATTGGC TACTCATCAG CTGTCAGACA TTCTTCCCCG GCAATTAGGA TGGTCCCTGT ACATGGTGAA  TTTGGTTCTC CGATTTTGTT TTGTGTGAGC CAAACGCTTG TGAGAAATGT GGTGTTGTGT AAATTCCTTT ACGTACGTGA GACTATTGAA GAATTAATAG AAACAAAGTG CAAGTTATAT 
GACTG 

Retrieve as FASTA