View Redoxidase 7999

Entry information : SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])

Entry ID	7999
Creation	2011-02-09 (Toky Ramarohetra)
Last sequence changes	2011-03-03 (Nizar Fawal)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-04-28 (Christophe Dunand)

Peroxidase information: SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])

Name (synonym)

SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])

Class

Ascorbate peroxidase [Orthogroup: APx2004]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue types

Leaves
Seedlings

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbAPx09 start..stop	S start..stop
ZmAPx10	688	0	1..351	1..351
SiAPx04	630	0	1..351	1..353
OsAPx10	570	0	1..351	1..348
TaAPx08-1B	559	0	1..351	29..377

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7999' 'join(56404707..56404802,56404894..56405010,56405308..56405392,56405489..56405523,56405617..56405682,56405763..56405802,56405939..56406064,56406182..56406288,56406427..56406564,56406720..56406854,56406943..56407053)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	56404707..56404802	94	N° 2	56404894..56405010	115	N° 3	56405308..56405392	83	N° 4	56405489..56405523	33
N° 5	56405617..56405682	64	N° 6	56405763..56405802	38	N° 7	56405939..56406064	124	N° 8	56406182..56406288	105
N° 9	56406427..56406564	136	N° 10	56406720..56406854	133	N° 11	56406943..56407053	109
join(56404707..56404802,56404894..56405010,56405308..56405392,56405489..56405523 ,56405617..56405682,56405763..56405802,56405939..56406064,56406182..56406288,564 06427..56406564,56406720..56406854,56406943..56407053)

Literature and cross-references SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])

DNA ref.	Phytozome 12: Chr06 (56404721..56407067)

Protein sequence: SbAPx09 (Sobic.006G204000.1[2.1] / Sb06g027520[1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	351 (314)
PWM (Da):	38137.48 (33359.7)	Transmb domain:	i7-29o
PI (pH):	8.1 (5.34)	Peptide Signal:	cut: 26 range:26-339

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAGASFLSTAPLVARGVAACSSISTPTRRHPHIRVCCRADAEGSEAAAHEERLRFRRRDFIGTCVGSAIGLELIDGSTRFSGVATAADLIERRQRSEFQSKIKDTLYVAIAKPELVPSLLTLALNDAMTYDKATKTGGANGSIRLETSRPEN
SGLSAALDLLTEAKKEIDSFSKGGPISFADLIQFAAQSALKRSFLDAAIAKCGGNEEKGRTLYSAYGSNGWGLFDRTFGRADAQEADPEGRVPEWSKASVQEMKDRFVAVGLGPRQLAVM
SAFLGPDQAATEERLIADPDCRPWVEKYQRSRETVSRTDYEVDLITTLTKLSSFGQNINYEAYTYPKQKIDLGKLKL*

Retrieve as FASTA

Remarks

Complete sequence from genomic. 6 ESTs. cultivar="BTx623"

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGGGAGCGAGCTTCCTCTCGACCGCGCCGCTCGTTGCCCGCGGCGTCGCTGCCTGCTCTTCCATTTCGACTCCGACGCGGAGGCACCCGCACACGTACGTACGCCCCCCGAACTTA
CTGTTTTGCCCGTGCAGATTCCATTTCAGCTCCGACGTAATCGCGTGATCCTTGGTTTTGCCTGCGCAGATTCGAGTTTGCTGCCGGGCTGACGCTGAGGGCTCGGAGGCTGCTGCTCAT
GAAGAGCGTCTGCGATTCCGCCGGAGAGATTTCATTGGCACCTGCGTCGGGAGCGCCATTGGTTTGTGGTAAGTGGTAGTGCTACCATCCTGACAAAAGAACAATGCCCTTGTGCATTGG
TGTTACAGAAGTAAACAAATGTAGCATTATGGGAGAGCTTCAAGTTGTTGCCCCAGCAAACTTTTTATCTCAGCTGCATCTAGTCACGCTCGAACTTATGCTGATGCTGAAAAGTATTAT
TCGCTAATTTGTTCTGAGAGGAAAACAATGTACAAATGTGGTTATACTGTTTTAAGAGGAAAGACACCTTTTGTCTCAGTTCAGAGGTGATAAGCTGAACTTCGTTTATTTATGTCTTGG
GTTAGGAATTGATCGACGGTTCTACAAGATTCTCTGGAGTGGCTACTGCAGCTGATCTCATTGAGCGTAGACAACGGTCGGAGTTCCAGTGTGTAGGTCATCTCATATTGTTAGTTCCAT
TGGCCCACTTGAATGCTAATGTTTCATTCTCACCATCGAAATTGAAGTCTTTTGACTGTTTTTTGCAGCAAAAATCAAAGATACGCTCTACGTAGCCATAAAGAGGTGAGACGCCTTAGT
TTGTTGTACCTGGTGTTTTTCTTTCATCTATCTATCACTTCTGTTGCCTGAAACTGTGAACCTGATAATCTTTTGAAGGCTAAGCCAGAGCTCGTTCCATCATTGTTGACCTTGGCACTG
AATGATGCCATGACATATGACAAGAGGTCTGGTATCTGAATGGCTTTATATCATTAGCATTTGGGTCCCTCTGTTGGTTTAGAGAGTTGGTTTAATTCTTCTGCAGGCCACAAAAACTGG
AGGAGCAAATGGGTCTATCAGGCTAGAGGTAGCAATTTCTTTTTCCTTTTCTCTTCTTCAGTTCTTCAGTTTGTTTTTTGTTTTGAGAGAAGAAAATGTTCAGCTGGAGATAATCCGTTG
CGTTGCTCCACCATTTAATACTTAATTTTTCAAATAAAGCCCAGAAACAAGCAGACCTGAAAACAGTGGGCTCTCTGCTGCATTGGATTTGCTGACTGAAGCCAAAAAGGAGATAGATTC
CTTTTCCAAGGGAGGTCCCATTTCATTTGCAGATCTGATCCAGTTTGCAGAGGTTCGACAATTTCCAGTGCAGTTTTACTACCATTATGAAACTTGTTGATCTTTACTGGCAAGCTCTTC
CGTATATTGGCTTGTTTTAAATTAAGAATTTTGTTTTTTCTTGAAACAGCACAATCAGCACTGAAGAGATCATTTCTTGACGCGGCCATTGCCAAATGTGGTGGAAATGAAGAGAAGGGA
AGAACCCTATACTCTGCATATGGTTCAAATGGGCAGAGGTATGTACTGTGCCACATTGCTCCTTATGTCACATGATGCTTCATATGTTCAGTATACACTCTGTACAAGCTGCTCCTTATT
TAACGTTTAAAATTATATTTTTTCTCTACGTTTGTTTTGACTATTTGCAACCACAGTGGGGTCTGTTCGATAGAACATTCGGGAGAGCAGATGCACAGGAAGCAGATCCAGAGGGAAGAG
TGCCTGAGTGGAGCAAAGCTTCTGTGCAGGAGATGAAGGATAGGTTCGTCGCTGTTGGGCTGGGTCCTCGCCAGAGGTTACTACTACCACATCCTTATTAGATTGCTGAAATAAATTAAC
TGTCTTAACTTATCTCATTATTGTCATGACCATGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAAACCATGAACCAGTCTCACGTTTAATAGAAGATGGCTCTTTTTGCAGCTTGCTGTT
ATGTCAGCATTCCTTGGACCTGACCAGGCTGCTACCGAGGAACGACTGATAGCTGATCCAGATTGCCGTCCATGGGTGGAGAAGTACCAGCGGAGCCGCGAGACTGTCTCCCGGACTGAC
TACGAAAAGTATGATTCATTGATGCGTATGTGCTGGCAATGCTCGGTATATCTTCTAGTGTTTATTCTAACTTGTGCTTATTTGTCTGTATGGCAGGTTGACCTGATTACCACACTCACA
AAGCTGAGCTCCTTCGGCCAGAACATAAACTATGAAGCCTACACATACCCTAAGCAAAAGATTGACCTGGGCAAATTGAAACTGTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGGGAGCGAGCTTCCTCTCGACCGCGCCGCTCGTTGCCCGCGGCGTCGCTGCCTGCTCTTCCATTTCGACTCCGACGCGGAGGCACCCGCACATTCGAGTTTGCTGCCGGGCTGAC
GCTGAGGGCTCGGAGGCTGCTGCTCATGAAGAGCGTCTGCGATTCCGCCGGAGAGATTTCATTGGCACCTGCGTCGGGAGCGCCATTGGTTTGGAATTGATCGACGGTTCTACAAGATTC
TCTGGAGTGGCTACTGCAGCTGATCTCATTGAGCGTAGACAACGGTCGGAGTTCCAGTCAAAAATCAAAGATACGCTCTACGTAGCCATAAAGGCTAAGCCAGAGCTCGTTCCATCATTG
TTGACCTTGGCACTGAATGATGCCATGACATATGACAAGGCCACAAAAACTGGAGGAGCAAATGGGTCTATCAGGCTAGAAACAAGCAGACCTGAAAACAGTGGGCTCTCTGCTGCATTG
GATTTGCTGACTGAAGCCAAAAAGGAGATAGATTCCTTTTCCAAGGGAGGTCCCATTTCATTTGCAGATCTGATCCAGTTTGCAGCACAATCAGCACTGAAGAGATCATTTCTTGACGCG
GCCATTGCCAAATGTGGTGGAAATGAAGAGAAGGGAAGAACCCTATACTCTGCATATGGTTCAAATGGGCAGTGGGGTCTGTTCGATAGAACATTCGGGAGAGCAGATGCACAGGAAGCA
GATCCAGAGGGAAGAGTGCCTGAGTGGAGCAAAGCTTCTGTGCAGGAGATGAAGGATAGGTTCGTCGCTGTTGGGCTGGGTCCTCGCCAGCTTGCTGTTATGTCAGCATTCCTTGGACCT
GACCAGGCTGCTACCGAGGAACGACTGATAGCTGATCCAGATTGCCGTCCATGGGTGGAGAAGTACCAGCGGAGCCGCGAGACTGTCTCCCGGACTGACTACGAAGTTGACCTGATTACC
ACACTCACAAAGCTGAGCTCCTTCGGCCAGAACATAAACTATGAAGCCTACACATACCCTAAGCAAAAGATTGACCTGGGCAAATTGAAACTGTAA

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CTTATCCTCG CGAGCTACTG CCGCACCAGC CTGCGAGCCT CCATTGAGAG CGCTCAACCA GCCATTGAGA GCGTCAGAGG TCAGTAGAGA AATGGCGGGA GCGAGCTTCC TCTCGACCGC GCCGCTCGTT GCCCGCGGCG TCGCTGCCTG CTCTTCCATT TCGACTCCGA CGCGGAGGCA CCCGCACATT CGAGTTTGCT GCCGGGCTGA CGCTGAGGGC TCGGAGGCTG CTGCTCATGA AGAGCGTCTG CGATTCCGCC GGAGAGATTT CATTGGCACC TGCGTCGGGA GCGCCATTGG TTTGGAATTG ATCGACGGTT CTACAAGATT CTCTGGAGTG GCTACTGCAG CTGATCTCAT TGAGCGCAGA CAACGGTCGG AGTTCCAGTC AAAAATCAAA GATACGCTCT ACGTAGCCAT AAAGGCTAAG CCAGAGCTCG TTCCATCATT GTTGACCTTG GCACTGAATG ATGCCATGAC ATATGACAAG GCCACAAAAA CTGGAGGAGC AAATGGGTCT ATCAGGCTAG AAACAAGCAG ACCTGAAAAC AGTGGGCTCT CTGCTGCATT GGATTTGCTG ACTGAAGCCA AAAAGGAGAT AGATTCCTTT TCCAAGGGAG GTCCCATTTC ATTTGCAGAT CTGATCCAGT TTGCAGCACA ATCAGCACTG AAGAGATCAT TTCTTGACGC GGCCATTGCC AAATGTGGTG GAAATGAAGA GAAGGGAAGA ACCCTATACT CTGCATATGG TTCAAATGGG CAGTGGGGTC TGTTCGATAG AACATTCGGG AGAGCAGATG CACAGGAAGC AGATCCAGAG GGAAGAGTGC CTGAGTGGAG CAAAGCTTCT GTGCAGGAGA TGAAGGATAG GTTCGTCGCT GTTGGGCTGG GTCCTCGCCA GCTTGCTGTT ATGTCAGCAT TCCTTGGACC TGACCAGGCT GCTACCGAGG AACGACTGAT AGCTGATCCA GATTGCCGTC CATGGGTGGA GAAGTACCAG CGGAGCCGCG AGACTGTCTC CCGGACTGAC TACGAAGTTG ACCTGATTAC CACACTCACA AAGCTGAGCT CCTTCGGCCA GAACATAAAC TATGAAGCCT ACACATACCC TAAGCAAAAG ATTGACCTGG GCAAATTGAA ACTGTAAAGA TATTTGCCAG GCACCTGCAT CGGCCATACC CAGGATTCAG GAGCTCATAA TATGGTAGGC TCTGGCTGCT AAAGAGTGAT TTGATTCGGC ACTGACGTTC ATGTATTGGC TACTCATCAG CTGTCAGACA TTCTTCCCCG GCAATTAGGA TGGTCCCTGT ACATGGTGAA TTTGGTTCTC CGATTTTGTT TTGTGTGAGC CAAACGCTTG TGAGAAATGT GGTGTTGTGT AAATTCCTTT ACGTACGTGA GACTATTGAA GAATTAATAG AAACAAAGTG CAAGTTATAT
GACTG

Retrieve as FASTA