Entry information : BnAPx-R-2_other
Entry ID 8309
Creation 2011-04-18 (Christophe Dunand)
Last sequence changes 2011-04-18 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-05-02 (Christophe Dunand)
Peroxidase information: BnAPx-R-2_other
Name BnAPx-R-2_other
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue type Ovaries
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnAPx-R-2_other
start..stop
S start..stop
BrAPx-R-1Aa_other 427 1.9e-153 2..208 60..266
BnAPx-R-1_other 415 1.06e-148 1..208 57..264
BoAPx-R-1Ca_other 414 2.11e-148 1..208 57..264
AlyAPx-R 369 1.05e-130 1..208 62..269
Literature and cross-references BnAPx-R-2_other
Literature Malik,M., Whittle,C.A., Zhou,N. and Krochko,J.E. Brassica napus ovules prior to fertilization. Unpublished (2009)
EST ref. GenBank:   GR449594.1 [Fragment]
Protein sequence: BnAPx-R-2_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   208 (175)
PWM (Da):   %s   22513.71 (18859.7)  
PI (pH):   %s   7.57 (5.33) Peptide Signal:   %s   cut: 34 range:34-208
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GSRHVFVSSR RQMAVLLSTV QLLSHWLPPD GKAADMYPLM KDEIRRVVTK GKAAGVLRLV FHDAGTFELD DNTGGINGSI VYELERPENA GLKRSLKVLE KAKIKVDEIQ PVSWADMIAV 
GGSEAVSMCG GPTIPVVLGR LDSMQPDPED KLPPESLNAS GLKECFQRKG FSTQELVALS GAHTIGSKGF GDPFTFDNAY YKILLKKP 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. 5' and 3' ends are missing. No GSS. Cultivar="Topas (embryogenic line DH4079)".
cDNA
Send to BLAST