View Redoxidase 8367

Entry information : CsAPx-R (orange1.1g019824m)

Entry ID	8367
Creation	2011-05-09 (Christophe Dunand)
Last sequence changes	2011-05-10 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: CsAPx-R (orange1.1g019824m)

Name (synonym)

CsAPx-R (orange1.1g019824m)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus sinensis [TaxId: 2711 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CsAPx-R start..stop	S start..stop
CclAPx-R	684	0	1..335	1..335
GhAPx-R	468	5.91e-167	25..334	23..333
PtAPx-R	466	1.48e-166	27..335	27..337
GrAPx-R	464	4.93e-166	25..335	23..334

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8367' 'complement(join(474650..474752,474948..475014,475218..475339,475626..475709,475937..476033,476119..476161,476315..476385,476462..476589,477296..477410,477497..477674))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	477497..477674	176	N° 2	477296..477410	113	N° 3	476462..476589	126	N° 4	476315..476385	69
N° 5	476119..476161	41	N° 6	475937..476033	95	N° 7	475626..475709	82	N° 8	475218..475339	120
N° 9	474948..475014	65	N° 10	474650..474752	101
complement(join(474650..474752,474948..475014,475218..475339,475626..475709,4759 37..476033,476119..476161,476315..476385,476462..476589,477296..477410,477497..4 77674))

Literature and cross-references CsAPx-R (orange1.1g019824m)

DNA ref.	Phytozome 12: scaffold00051 (477674..474650)
EST ref.	GenBank: EY742006.1 [Fragment]

Protein sequence: CsAPx-R (orange1.1g019824m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	335 (307)
PWM (Da):	36331.29 (33611.2)
PI (pH):	8.56 (9.60)	Peptide Signal:	cut: 24 range:24-330

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSSTASSLCGCSTAYYSSPLLAPKFKFKFPAKSQRSSLSTVEFR
ANPLTISSSLVNHRGKDGSCNSNRRRRGLLLTATLPFLLPLHEFVQDLGAKAESGMSDYLLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNGGMNGSIVYELERPENAGLNKPLILEKAKGDVNAIRPVSW
ADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKGFGNPIVFDNSYYKILLEKPWQSAGMSSMIGLPSDRALVEDDECLR
WIKMYADNQNMFFEDFKNAYVKLVNSGARWRSL

Retrieve as FASTA

Remarks

Complete sequence from genomic (9 introns) and 1 EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGTTCATCAACTGCCTCCAGCCTCTGCGGCTGCTCCACCGCTTACTACTCTTCCCCTCTCCTCGCTCCCAAATTTAAATTCAAGTTTCCCGCCAAATCACAACGGTCCTCTCTCTCA
ACGGTCGAATTTCGCGCCAATCCCCTCACAATTTCTTCCTCCTTAGTCAACCACCGAGGTTCCAGTGACTGACCATAAAACTGATTCTTGTGATTAATTCTTAATTTATGTATTTTAACT
CTTTACATATGTTTAAATTTACAGGGGGAAAGATGGATCTTGCAATTCGAATAGGAGGAGGAGAGGACTGTTGCTTACGGCTACACTTCCATTTCTTCTTCCTCTCCACGAATTTGTGCA
AGACCTGGGCGCAAAAGCTGAGTAAGTTGATTTTTTCTTTTTTTCTTTTTTTCCAAAAGCTGTAATTGTCTGATTTTGGATGCAACTTTCATTTTGTTCATTTAAGATTGTAATTAAATC
ATCTAATTGGATATAATTGAATAGCATACGTCTCTCCAATATTGTCATGTTTCATACATGAGCTTTGTTTTCATATACGATATTGCCATGCTTCAAAAGTTGGCGCACAACTTTTTTCTT
TTTCCTCACCTAATGTCGCGTATGACATGACATTGTTAGTTGTTACAATTTGCTTGGTCTTATGTGATCATTTTATCTTACCATCTCACCGATACATGGTGAATTGTTTGATTTTGATGG
CCATATGTATGTGAAATCATTTGAGATACTATATTTGTATGCCAACTTTGTAAGTGTAGCATTACTCACATACAAGCCTTCAATAGTGCCCGTGTCCTAAAGCTTGGATAAAAGGTTTAA
TCCACATATTTTGCTAAACAGAATTACTAGTTAACAAATATAATACAGAGAGTGTGGGTTGCTAAACATTATCTTCCAAGTAAAAGTTTAGTGGCTTTTGGAGGCCAGTAGTTACAAACA
TATCCCCATTTGAGTTCTGAGGTAACTGGCCAAGTGTTAATAGTTTCTCTGTGTTGCTTGACTAGATCCTGCAATTTTTTTTTCCGTTTTTCTGATTATTTTTCAATTTCCTTTACTGAC
ACCACAGGTGTCAGGTATGAGTGACTATCTGCTTATGAAAGAAGAAGTGACTAAGGTAGTTTCAAAAGGCAAGGCTGCTAGTGTACTTCGTCTTGCATTTCATGATGCAGGGACCTTTGA
AATGGATGATAATTCGGGTAAGTTTTAGGATATTATGATTGGTCTTCCTCAGTTTCCCATAAAATTTATCATGTCTTCTTGTCATTAGTGCAGGTGTGGTATGAACGGTTCTATAGTTTA
TGAACTGGAAAGACCTGAAAATGCAGGCCTGAACAAGCCTTTGAAGGCATGCTCTGTTTCCTTTGTTTTGTTATTGTTTTGATATATGTACTTTGTTTTCTAATTATCCATCCCTTAGAT
TCCTTGAACATAAGTCCAAACAAATTAACTCTTATGTCGCTCTACCAGCTAACCCTTTACTGGATCCATTGTTGTTTAGATATTCTAGAGAAAGCAAAGGGTGACGTGAATGCAATACGG
CCAGGTTTGTCCATCTGAAATTCTGCTGTTGAATCTCTGATAGCTACGTATGCTATGGTGCTAAGATGTGTGAATCTTGCATTGTTTAGTGTGTCATGGGCAGATATGATCGCTTTGGGT
GGAGCTGTAGCAGTTTCAGTTTGCGGAGGTCCAAACATCCCAGTTCCTATGGGCAGACTTGATTCAATGTAAGTAGCTAGCTTTCCACTAAGATTATTAACTTTAAATAGAATCAATTAG
GCAAACAAAGATTATTTACCAGAGGGATCCTCAAATGTGCAATTTCATCAATATTAAATCTTATGTGCTTCAGTGCTGATTCATTTGGAAAATTGATCAAATATCATATCATTTCATACG
ATAACTATCCGAGCCTTCACTGTTTTTGCTTTTAATAAGGGATTTTTCTTCATAGGGGGAGCCTGATCCTGAAGGAAAACTTCCGCAAGAAACTTTGGATGCTTCTGGTTTGAAGCAATG
CTTTCAAAGAAAAGGCTTCTCGTGAGTTTATACCAGCAGACATATTTTTTATCCATATTTTCTTCTCTAATTAAGTTCAGTAATCTGTTGAGTGAATTCCTTATAAAACTAAAATCTAGC
TGGCCATTTTTATCATTTTTTTAAATTATGAAAATCAGTAATATGCATGCTTATAAGGCATTTAGCCACAATCTAGTTGGTACTACATTCATGTTGTTGGAAAAGCATTAACATACAGTA
ATTCCAATTCAGGAACATCTGGATTGAGGAAAACCATGGCTTTTATTTATTTTATTTTTATTTTCAGAGAGCACAAGAGCTAGTTGCTTTATCTGGAGCCCATACTCTTGGAACCAAAGG
TTTTGGAAATCCAATAGTTTTCGACAATTCGTACTATAAAATTCTTTTAGAGAAGCCATGGCAGTCTTCAGGTGAATAGCCTCTCACACAGAACTCATTATGTTCTCTCCTGTGCATTTA
ATAAAGAATCTTATGTTTGTTTGAATTTCCGAATTTGGATAGTAACTTTTTGATGCAACCCTTGCAAAAAGAAAGTCTAGATGACCCAGTTATTGTTTCTTGATTAGTTTTTCTTTTCTC
ATCAATTGATTCTTTTCTTTGCTTTTGCTTGTAGCTCTGGTATGTCAAGCATGATTGGACTTCCTTCAGATCGTGCACTTGTTGAGGATGATGAATGTTTGAGGTTTGTCATCTTCGAAG
AGCCTCTTAAAACTTACCTGAATTCTATCAACTTCTTTTAAATGACTCTTAAGTGGTCATTAATTAGGAGATACTTTTAGAAATGAGATGTTGGGAACTGAAAACAATAAAAAATTTGTT
AATAATCAACAATTACATACAAAATTTTCTTATCTTTGATGCTTAAACTAATGCGCAGATATGGATCAAGATGTATGCTGACAATCAGAATATGTTCTTTGAAGACTTCAAGAATGCTTA
CGTTAAACTAGTGAACTCCGGAGCAAGGTGGAGAAGCTTGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA