View Redoxidase 846

Entry information : SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])

Entry ID	846
Creation	2005-12-30 (Christophe Dunand)
Last sequence changes	2005-12-30 (Christophe Dunand)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])

Name (synonym)

SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])

Class

Class III peroxidase [Orthogroup: Prx028]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue types

Leaves
Roots
Seedlings

Inducers

Acid treatment
Alkaline treatment
Nitrogen starvation
Oxidative stress
Pathogen interaction

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrx102 start..stop	S start..stop
ZmPrx15	565	0	24..319	27..322
SiPrx65	491	4.73e-177	9..319	6..319
TaPrx108-1D	474	3.88e-170	5..318	1..318
TaPrx108-1B	474	4.38e-170	5..318	1..318

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '846' 'join(1265922..1266881)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1265922..1266881	958
join(1265922..1266881)

Literature and cross-references SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])

Literature	Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref.	Phytozome 12: chromosome_7 (1265922..1266881)

Protein sequence: SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	319 (292)
PWM (Da):	34180.96 (31489.4)	Transmb domain:	i12-34o
PI (pH):	5.15 (4.76)	Peptide Signal:	cut: 28 range:28-319

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MMAKMIAAKN LVKLLVLLQV AAGGGVAALS MDYYSMSCPF AEMMVRSVVY DALAKDPTLA GSLLRLHFHD CFVQGCDASV LIDSTDGNTA EKDAQANKSL RGFEVIDRIK EVLESQCPGV VSCADVLALA ARDAVLLARG PYYGVPLGRR DGTRSVDSDT FTALPPPFFN TTSLIKLFGS HGFTVQDLVA LSGGHTLGIA HCGNFKARLA ETDTLDAALG SSLGATCAAN GDDGAAPFDR
TSTRFDTVYY RELQMRRGLL SSDQTLFESP ETKGIVNMFA MNQAYFFYAF QQGMLKMGQL DLKEGDEGEI RHTCGVINS

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 7, no intron) and 5 EST (3'is missing) + TC94126 (4 ESTs) + TC94125 (5 EST, bad sequence for the 5'end).

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGATGGCGA AGATGATTGC GGCCAAGAAC CTTGTGAAGC TCCTCGTCCT CCTGCAGGTG GCCGCCGGCG GCGGCGTGGC GGCGCTCAGC ATGGACTACT ACAGCATGAG CTGCCCGTTC GCGGAGATGA TGGTCCGCAG CGTCGTCTAC GACGCTCTCG CCAAGGACCC CACCCTCGCC GGCAGCCTCC TGAGGCTGCA CTTCCACGAC TGCTTCGTGC AGGGCTGCGA CGCGTCGGTG CTGATCGACT CGACGGACGG CAACACGGCG GAGAAAGACG CGCAGGCGAA CAAGAGCCTG CGCGGCTTCG AGGTGATCGA CCGCATCAAG GAGGTGCTGG AGTCGCAGTG CCCGGGCGTC GTCTCCTGCG CCGACGTCCT GGCTCTGGCG GCGCGCGACG CCGTGCTCCT CGCTCGGGGC CCCTACTACG GCGTGCCGCT GGGCCGCCGC GACGGGACGC GGTCGGTGGA CTCGGACACC TTCACGGCGC TCCCGCCGCC CTTCTTCAAC ACGACGTCGC TCATCAAGCT CTTCGGCTCG CACGGGTTCA CGGTGCAGGA CCTGGTGGCG CTCTCCGGCG GCCACACGCT GGGGATCGCG CACTGCGGCA ACTTCAAGGC CAGGCTCGCC GAGACGGACA CGCTGGACGC CGCGCTGGGG TCGTCGCTCG GCGCCACCTG CGCCGCCAAC GGGGACGACG GCGCCGCGCC GTTCGACCGG ACCAGCACCA GGTTCGACAC CGTCTACTAC CGGGAGCTGC AGATGCGGCG AGGGCTCCTG AGCTCCGACC AGACGCTGTT CGAGTCGCCG GAGACCAAGG GCATCGTCAA CATGTTCGCC ATGAACCAGG CATACTTCTT CTACGCGTTC CAGCAGGGGA TGCTCAAGAT GGGGCAGCTC GACCTCAAGG AAGGCGACGA GGGTGAGATC AGGCACACGT GCGGGGTCAT CAACTCCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA