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Entry information : PtAPx10 (POPTR_0005s17350 / Potri.005G161900)
Entry ID 8470
Creation 2011-08-18 (Christophe Dunand)
Last sequence changes 2011-08-18 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-11-28 (Qiang Li)
Peroxidase information: PtAPx10 (POPTR_0005s17350 / Potri.005G161900)
Name (synonym) PtAPx10 (POPTR_0005s17350 / Potri.005G161900)
Class Ascorbate peroxidase    [Orthogroup: APx2004]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type Leaves
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtAPx10
start..stop		 S start..stop
CclAPx01 577 0 1..347 1..349
MeAPx02 575 0 1..348 1..350
CpapAPx06 560 0 1..348 4..348
VvAPx07 559 0 1..347 1..344
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 14664645..14664740 94 N° 2 14664439..14664537 97 N° 3 14663965..14664049 83 N° 4 14663847..14663881 33
N° 5 14663648..14663713 64 N° 6 14663496..14663536 39 N° 7 14662938..14663068 129 N° 8 14662685..14662791 105
N° 9 14662196..14662333 136 N° 10 14661934..14662068 133 N° 11 14661631..14661741 109  
complement(join(14661631..14661741,14661934..14662068,14662196..14662333,1466268 5..14662791,14662938..14663068,14663496..14663536,14663648..14663713,14663847..1 4663881,14663965..14664049,14664439..14664537,14664645..14664740))


exon

Literature and cross-references PtAPx10 (POPTR_0005s17350 / Potri.005G161900)
DNA ref. Phytozome 12:   scaffold_5 (14664740..14661631)
Omic ref. ePlant:   Potri.005G161900
Protein sequence: PtAPx10 (POPTR_0005s17350 / Potri.005G161900)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   347
PWM (Da):   %s   37849.34 Transmb domain:   %s   i20-42o
PI (pH):   %s   7.91
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGASFLSTLPSLVSVPSLTISTTPTIRCPSHAVAIRCHKMDTDVPGENVLRRREVLKCFGATVGMELLASSGSFVEMASAADLIQRRQRSEFQSSIRQTLFAAIKGKPELVPYILTLALN
DAITYDKATKSGGPNGSIRFSSEISRPENKGLSAALNLIEEAKEEIDSYSKGGPISFADLIPYAGQSAVKATFLASAIRKCGGNEQKGSLLYSAYGSSGQWGLFDRQFGRTDSQEPDPEG
RVPQWEKATVQEMKDKFSSIGFGPRQLAVMSAFLGPDQAATEALLATDPDVTPWVQKYQRSRETVSQTDYEVDLITTLTKLSSMGQQINYEAYTYPVRKIELSKLKL*

Retrieve as FASTA  
Remarks Complete sequecne from genomic and 8 ESTs. Incorrect prediction from Phytozome (first intron is not predicted)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTGCTTCTTTCCTATCAACCCTCCCCTCTTTGGTTAGTGTCCCTTCTTTAACCATCTCTACTACTCCTACCATTAGATGTCCTTCTCATGCTGTAAGTTCTCTTGAAATGTTGCTT
CAGTTTCATCTTGGCTGGGAATGCTACAGAAAATGGAATCATTTATTTTTCTCTCTTTTGCCTTTTGGCTAAATATTGATCAGGTGTCGCAATTCGTTGTCATAAAATGGACACTGATGT
CCCTGGTGAGAATGTTCTACGTCGAAGAGAAGTTTTGAAATGCTTTGGTGCTACTGTTGGCATGGTAAGAGAGAAATAACACTTCCCTTTCATTGCTCAAGGATTTGGCATTCACATTCT
ATGCAAACTTGACCATCCACTTCTTGATTCTATTTCAAAGGAGATACATTAGTGTGTTGTTTTGGTATACATGGTCAGATGACACTAATCCTACATTCGAAACATTGTTGATTTATGAGA
TATACAATTTAATTGCCTTTTTTTTTCCCGCTCAGAAAAAAATATAAATAAAAAGGGGATATCTGAAATATTTCAGTTATAATATTCTCTCATTTTGATTTTGTGGAATGTTGATGTTAA
TGGTTGTATTTTGACGCATCCTTTATATATTGGAAATCCATAATGTAGAATGATGTGATGATGAGTTTCTAACCTGTTTTGCTGTAAACTTAGGAGAATTGCTAGCAAGCTCAGGATCAT
TTGTTGAAATGGCTAGTGCTGCTGATTTGATCCAACGCAGGCAGCGTTCTGAGTTTCAGTGTGAGTTCCCTAATCTCAACATTTCCAAGCATGCTCAATCAGCTACAGTTTGCTCAGTTG
ATGTTGCATCTTCTTTCTCACAGCCCCAGCATAAGGCAGACCCTTTTCGCAGCTATAAAGGTGAACCACACAACCTTGCCTTTATGCTATCTTTTTATCAAGTAGTTGTTCTGCAGTTCT
ATAAAATGGATAGAAATATCTACATCGTGCTTTGATGGTTTTTTGATCACTATTCCGTTGATATTTGTTTCAGGGGGCAAACCTGAACTTGTACCATACATTCTAACTCTGGCTCTGAAT
GATGCCATTACTTATGATAAGGTCAGACAAATTCCTTCACCTGTTGAATTCCTATATGATTGCTATGGAAGTCCTTAACTAAAGGTAAAAGTCGAAAGAAATGCGCTGATTAATTCCTGA
TTAAGTTTGCAGGCGCTACAAAATCTGGGGGCCCAAATGGATCCATACGATTCAGGTATTTCAGTTATGAAGTTATCATCTTTTATGAGTTTGTACACTGATTTATCAATGTGTGAAAGT
TTACACTTTCCTCTTCCTCTAGCATGTAGAGAAACTGGGTCTCATACATTTGCATACGCACTGCAAGCATCAACTCCCAATTGATTATGATTATTCACTGAGGAATGAGCAAATAGAACC
TCCTACAGGTTCTTTGTGAAGCATCCTGTCAGCACGCTTATATCACGATCTGTGATGTTCGCTGTTCCTGGTTTTTGGATGCTTAAGTAAATTAGAACACCTGCTTAGGTTGCAGAATTG
TAAATTATTGTCTGAAGTAATCCCTGCTTCTTGATTGAAGTCCCTTTTGCTTTTTGAAGCAATAACTTACCTCCTTGCCTGAATGTTGTCTTAATTTTCTTCTCCTTTTTTCCCACCTGA
AGTTTTCAGAGATAAGCAGACCTGAAAATAAGGGACTTTCTGCCGCGTTGAATTTAATAGAGGAAGCGAAGGAGGAGATTGATTCATATTCCAAGGGTGGACCCATCTCTTTTGCAGATC
TTATCCCGTATGCAGGTTATACACATTAATAATCCCAAATTTATGCCGTGCTGCATACTCTGGCCTTATTGCATGACCTAGTTTATGTACAGATGAACAGAATTTAATTCATCAACAGAG
AAGACCAATGTCCCTGACTCAATTTTGTTTGTTCTCTGCAGGAGACAAAGTGCTGTTAAGGCTACATTTCTGGCTTCTGCCATCCGCAAGTGTGGCGGTAATGAACAGAAAGGAAGCTTA
TTGTACTCCGCATATGGATCCAGTGGACAGGTTAGTGTTTCTAATTTGGCTGTGTTGTGGACAGTTTTAATTTGCACCAGGATATATAAAATATTGGCAACTCTACCTCTGAACCAGCCT
TATTATTAAAGTCAAGGTCTAAAACAGTGGCTACATAAGAGTTATAGTATGCAGAAAGGTTAGGGAGATCCTTGTGTAAAAAGGAACATTACGATGACTGCAATTATGCTCAAATGAGTT
CTCGTAAATACATACAGATAGAAGTAGATATTTCATCATTTTTCCTATCATCCGACCTACAAAAGGGTGTGTGTCTATTATCAATAAAAGCAAGTTATAGTGATAAGCAATTAATCCCAA
CAATTGTTGTTGTTCTTATAGTGTGGGGATTGTTTGATAGACAATTCGGAAGGACAGATTCCCAAGAGCCAGATCCAGAAGGGAGGGTTCCCCAGTGGGAGAAAGCCACAGTCCAAGAAA
TGAAAGACAAGTTCTCATCTATTGGCTTTGGTCCCCGCCAGGTATGCTTTCAACAAATATATTAAGGATCACGAGCTCACAACCTTCTAAAAAGACAGGAAATTTCACTTTGGAAAGACA
CCTATAGATGGTCGCTGATCCAATTCTGTTCCTTCCCTGGTTGACCAGCTCTAGCTGTTATGTCTGCGTTCTTGGGTCCTGATCAAGCAGCAACAGAGGCCTTACTGGCAACTGATCCAG
ATGTTACACCATGGGTTCAGAAGTACCAACGTAGCCGAGAAACAGTGTCTCAGACAGATTATGAGGTCAGTTGATAATTCTCAACAGGGATCCCAATCAATTGAACCTGCCTAATTTGAA
ATTATGCGATGTAGTTCTTGCTATGGAGGAGCAGAGGGAATTTGATGCTATTATGTACCGTTAAATCCTCGCATTTCCAAATTTATGTTGCCTCTAGATCTGTTCTAATTACGGTCTTGG
AATTGATTTTCTTGCAGGTGTCGATCTGATAACTACTCTCACCAAATTAAGTTCCATGGGCCAACAAATCAATTATGAAGCATATACATATCCTGTCCGAAAGATTGAGTTGAGCAAACT
CAAGTTATAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTGCTTCTTTCCTATCAACCCTCCCCTCTTTGGTTAGTGTCCCTTCTTTAACCATCTCTACTACTCCTACCATTAGATGTCCTTCTCATGCTGTCGCAATTCGTTGTCATAAAATG
GACACTGATGTCCCTGGTGAGAATGTTCTACGTCGAAGAGAAGTTTTGAAATGCTTTGGTGCTACTGTTGGCATGGAATTGCTAGCAAGCTCAGGATCATTTGTTGAAATGGCTAGTGCT
GCTGATTTGATCCAACGCAGGCAGCGTTCTGAGTTTCAGTCCAGCATAAGGCAGACCCTTTTCGCAGCTATAAAGGGCAAACCTGAACTTGTACCATACATTCTAACTCTGGCTCTGAAT
GATGCCATTACTTATGATAAGGCTACAAAATCTGGGGGCCCAAATGGATCCATACGATTCAGTTCAGAGATAAGCAGACCTGAAAATAAGGGACTTTCTGCCGCGTTGAATTTAATAGAG
GAAGCGAAGGAGGAGATTGATTCATATTCCAAGGGTGGACCCATCTCTTTTGCAGATCTTATCCCGTATGCAGGACAAAGTGCTGTTAAGGCTACATTTCTGGCTTCTGCCATCCGCAAG
TGTGGCGGTAATGAACAGAAAGGAAGCTTATTGTACTCCGCATATGGATCCAGTGGACAGTGGGGATTGTTTGATAGACAATTCGGAAGGACAGATTCCCAAGAGCCAGATCCAGAAGGG
AGGGTTCCCCAGTGGGAGAAAGCCACAGTCCAAGAAATGAAAGACAAGTTCTCATCTATTGGCTTTGGTCCCCGCCAGCTAGCTGTTATGTCTGCGTTCTTGGGTCCTGATCAAGCAGCA
ACAGAGGCCTTACTGGCAACTGATCCAGATGTTACACCATGGGTTCAGAAGTACCAACGTAGCCGAGAAACAGTGTCTCAGACAGATTATGAGGTCGATCTGATAACTACTCTCACCAAA
TTAAGTTCCATGGGCCAACAAATCAATTATGAAGCATATACATATCCTGTCCGAAAGATTGAGTTGAGCAAACTCAAGTTATAG

Retrieve as FASTA