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Entry information : TvVP01
Entry ID 8528
Creation 2011-09-23 (Christophe Dunand)
Last sequence changes 2011-09-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-05-10 (Catherine )
Peroxidase information: TvVP01
Name TvVP01
Class Versatile peroxidase    [Orthogroup: VP001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Trametes
Organism Trametes versicolor (Coriolus versicolor )    [TaxId: 5325 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TvVP01
start..stop		 S start..stop
TvCIIBA03_Gangwondo 731 0 1..364 1..364
TvCIIBA03_CU1 723 0 1..364 1..362
GapCIIBA01 555 0 1..364 1..364
GauCIIBA01 553 0 1..364 1..364
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8528' 'join(411488..411604,411662..411705,411763..411808,411862..411920,411975..411988,412041..412161,412232..412463,412592..412761,412838..412875,412936..413148,413212..413236,413295..413310)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 411488..411604 115 N° 2 411662..411705 42 N° 3 411763..411808 44 N° 4 411862..411920 57
N° 5 411975..411988 12 N° 6 412041..412161 119 N° 7 412232..412463 230 N° 8 412592..412761 168
N° 9 412838..412875 36 N° 10 412936..413148 211 N° 11 413212..413236 23 N° 12 413295..413310 14
join(411488..411604,411662..411705,411763..411808,411862..411920,411975..411988, 412041..412161,412232..412463,412592..412761,412838..412875,412936..413148,41321 2..413236,413295..413310)


exon

Literature and cross-references TvVP01
DNA ref. JGI genome:   scaffold_2 (411488..413310)
Protein sequence: TvVP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   364 (345)
PWM (Da):   %s   38036.53 (36143.5) Transmb domain:   %s   i257-279o396-418i438-460o470-489i604-621o
PI (pH):   %s   4.08 (4.04) Peptide Signal:   %s   cut: 20 range:20-364
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MFSKALLSIVALAASFTAAVPSANKRATCSGGQTTANDACCVWFDVLDDIQSNLFHGGECGENAHESLLIFHDAIAFSPALTAAGQFGGGGDGSIMAHTDVEIQYAANNGLDEIIEEQRPFALKHNVSFGDFIQFAGAVGVSNCNGGPQIGFFAGRSND
SQPAPDNLVPLPSDSVTDILARVADAGFAPVELVWMLISHTVAAQDKVDSIPGTPFDSTPSDFDAQFFVESMLNGTLTPGSALHDGEVQSPLPGEFRLQSDFLIGRDSRTSCEWQKMADR
ANMLQKFEQTVLKLSLLGFSQSALTDCSDVIPIATGTVADPFLPAGKTMADIEAACAATPFPTLSAAPGPETTIPAVPLDS

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTCTCCAAGGCCCTCCTCTCCATCGTCGCTCTCGCTGCGTCCTTCACCGCTGCTGTCCCGTCCGCCAACAAGCGGGCTACCTGCAGCGGCGGTCAGACCACTGCTAACGATGCGCGG
TGAGTATCACGCTGCTACGTCGATCGTGCTTAGCACCGTGCTGACGATCTTCACAGTGCTGCGTGTGGTTCGACGTCCTCGACGACATTCAGAGCAACCTCTGTAAGTCGCATTCAGTAC
TCTGGACGTTGTGGCCGGTCCCTCATCCGATGTTCGCAGCTTCCACGGCGGCGAGTGTGGCGAGAACGCCCACGAATCTCTCCGGGGGTAACTACCCTTGGAAGCTTAGACATCTTTAGC
CGCTGATCACCACCATCCAGCTCATCTTCCACGACGCCATCGCCTTCTCCCCTGCGTTGACGGCGGCAGGGCAGTTCGGGGGTGCGTTTACTTTCTTCCCTGACGGAAGTAACCCTATAC
TGACGTCTTCTATAGCGGCGGAGGTGCTGTGGTAAGTCCTCGGAAATCATACCGCCGGCGGGCATCATCTAATCACGTTCCAGACGGCTCGATCATGGCCCACACCGACGTCGAGATTCA
GTACGCCGCCAACAACGGCCTTGACGAGATCATCGAGGAGCAGCGCCCCTTCGCGCTCAAGCACAACGTGTCCTTCGGCGACTTTTGTAAGCACCGCTCGCATCTTGCACTCAAATTGGT
GCGTCCGGGAATCAGCTTCTAACTGCGCCCTAACAGCATCCAGTTCGCGGGAGCGGTCGGTGTGTCGAACTGCAACGGTGGCCCGCAAATCGGGTTCTTCGCCGGTCGCTCGAACGACTC
GCAGCCCGCGCCCGACAACCTCGTCCCCCTCCCGAGCGACTCCGTCACCGACATCCTCGCACGTGTCGCCGACGCGGGCTTCGCGCCCGTCGAGCTCGTCTGGATGCTGATCTCGCACAC
GGTCGCCGCGCAGGACAAGGTTGACGACACGTAAGTCCGCTTCTCTCCACCTCGAGGCCCCATCCCGCGTGCTTCGCATCCTGCGAACGTCGGGGTGGGACAGGTGCCAGTGGTATCAAC
GATCTCGTGCCGGCGCTGACGTGTTTGACCGAACGCAGTCCATCCCCGGCACGCCCTTCGACTCCACCCCGAGCGACTTCGACGCCCAGTTCTTCGTCGAGTCGATGCTCAACGGCACCC
TCACCCCCGGCAGCGCCCTCCACGACGGCGAGGTCCAGTCGCCCCTCCCCGGAGAGTTCCGTCTTCAGTCCGACTTCCTCATCGGCCGCGGTGAGTTATTCTTCGTCGTCGCCGTGCCTT
GTCAGGGCACGGAGAAGGGAGTGCGCACGCTAACTTCGCCGTCCAGGGACTCCCGCACCTCGTGCGAGTGGCAGAAGATGATCGCGGTACGTAACCGTCTACGATTCTATCCCTCGATGC
CGCCGGGCTGACCGTCTCCCCCACAGCCGACCGCGCAAACATGCTCCAGAAGTTCGAGCAGACCGTGCTCAAGCTGTCCCTGCTCGGGTTCTCTCAGTCGGCGCTCACTGACTGCTCGGA
CGTCATCCCGATCGCGACCGGCACGGTCGCGGACCCCTTCCTCCCCGCGGGCAAGACGATGGCCGACATTGAGGCTGCGTGCGCTGCCACGCCCTTCCCTACGCTCTCTGCCGCGCCTGT
GGTAAGTTCCCTGCAGCTCACATAACAGAATGCGAGCTGATCGGACGTTCTTGTGTTCTGACAGGTCCTGAGACCACCATCCCTGCCGTGTGTAAGTGATATCTGTCTTCGAGGGCGGTG
CGAGATGCTGACGATGTTCTTCCCCGCAGCCCCCTCGACTCGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTCTCCAAGGCCCTCCTCTCCATCGTCGCTCTCGCTGCGTCCTTCACCGCTGCTGTCCCGTCCGCCAACAAGCGGGCTACCTGCAGCGGCGGTCAGACCACTGCTAACGATGCGTGC
TGCGTGTGGTTCGACGTCCTCGACGACATTCAGAGCAACCTCTTCCACGGCGGCGAGTGTGGCGAGAACGCCCACGAATCTCTCCGGCTCATCTTCCACGACGCCATCGCCTTCTCCCCT
GCGTTGACGGCGGCAGGGCAGTTCGGCGGCGGAGGTGCTGACGGCTCGATCATGGCCCACACCGACGTCGAGATTCAGTACGCCGCCAACAACGGCCTTGACGAGATCATCGAGGAGCAG
CGCCCCTTCGCGCTCAAGCACAACGTGTCCTTCGGCGACTTCATCCAGTTCGCGGGAGCGGTCGGTGTGTCGAACTGCAACGGTGGCCCGCAAATCGGGTTCTTCGCCGGTCGCTCGAAC
GACTCGCAGCCCGCGCCCGACAACCTCGTCCCCCTCCCGAGCGACTCCGTCACCGACATCCTCGCACGTGTCGCCGACGCGGGCTTCGCGCCCGTCGAGCTCGTCTGGATGCTGATCTCG
CACACGGTCGCCGCGCAGGACAAGGTTGACGACTCCATCCCCGGCACGCCCTTCGACTCCACCCCGAGCGACTTCGACGCCCAGTTCTTCGTCGAGTCGATGCTCAACGGCACCCTCACC
CCCGGCAGCGCCCTCCACGACGGCGAGGTCCAGTCGCCCCTCCCCGGAGAGTTCCGTCTTCAGTCCGACTTCCTCATCGGCCGGGACTCCCGCACCTCGTGCGAGTGGCAGAAGATGATC
GCCGACCGCGCAAACATGCTCCAGAAGTTCGAGCAGACCGTGCTCAAGCTGTCCCTGCTCGGGTTCTCTCAGTCGGCGCTCACTGACTGCTCGGACGTCATCCCGATCGCGACCGGCACG
GTCGCGGACCCCTTCCTCCCCGCGGGCAAGACGATGGCCGACATTGAGGCTGCGTGCGCTGCCACGCCCTTCCCTACGCTCTCTGCCGCGCCTGGTCCTGAGACCACCATCCCTGCCGTC
CCCCTCGACTCGTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGGACTTC ACCAACAAAC GACACTCGTC GACGACTCGC AGGACAGCAC TCGGGACCGC TTCAGCACGC TTGCATTCGA CGACCTTCAT CATGTTCTCC AAGGCCCTCC TCTCCATCGT  CGCTCTCGCT GCGTCCTTCA CCGCTGCTGT CCCGTCCGCC AACAAGCGGG CTACCTGCAG CGGCGGTCAG ACCACTGCTA ACGATGCGTG CTGCGTGTGG TTCGACGTCC TCGACGACAT  TCAGAGCAAC CTCTTCCACG GCGGCGAGTG TGGCGAGAAC GCCCACGAAT CTCTCCGGCT CATCTTCCAC GACGCCATCG CCTTCTCCCC TGCGTTGACG GCGGCAGGGC AGTTCGGCGG  CGGAGGTGCT GACGGCTCGA TCATGGCCCA CACCGACGTC GAGATTCAGT ACGCCGCCAA CAACGGCCTT GACGAGATCA TCGAGGAGCA GCGCCCCTTC GCGCTCAAGC ACAACGTGTC  CTTCGGCGAC TTCATCCAGT TCGCGGGAGC GGTCGGTGTG TCGAACTGCA ACGGTGGCCC GCAAATCGGG TTCTTCGCCG GTCGCTCGAA CGACTCGCAG CCCGCGCCCG ACAACCTCGT  CCCCCTCCCG AGCGACTCCG TCACCGACAT CCTCGCACGT GTCGCCGACG CGGGCTTCGC GCCCGTCGAG CTCGTCTGGA TGCTGATCTC GCACACGGTC GCCGCGCAGG ACAAGGTTGA  CGACTCCATC CCCGGCACGC CCTTCGACTC CACCCCGAGC GACTTCGACG CCCAGTTCTT CGTCGAGTCG ATGCTCAACG GCACCCTCAC CCCCGGCAGC GCCCTCCACG ACGGCGAGGT  CCAGTCGCCC CTCCCCGGAG AGTTCCGTCT TCAGTCCGAC TTCCTCATCG GCCGGGACTC CCGCACCTCG TGCGAGTGGC AGAAGATGAT CGCCGACCGC GCAAACATGC TCCAGAAGTT  CGAGCAGACC GTGCTCAAGC TGTCCCTGCT CGGGTTCTCT CAGTCGGCGC TCACTGACTG CTCGGACGTC ATCCCGATCG CGACCGGCAC GGTCGCGGAC CCCTTCCTCC CCGCGGGCAA  GACGATGGCC GACATTGAGG CTGCGTGCGC TGCCACGCCC TTCCCTACGC TCTCTGCCGC GCCTGGTCCT GAGACCACCA TCCCTGCCGT CCCCCTCGAC TCGTAAGATG CGGTAACACT  ATATGGTGGC GGGCAGTAAT GTCTGGCACG ATGAACGAAC TTGATTGGAA GTAGATAACT TTATGATCCT TGGTATTATG GTGGAACTTG AAGGGCTTCG CGTACGAGCT GATTAGGTCT 
ATTTGTTGAA CGTGATGTGA TACGCTATCG TCTTCGAAAT GCATTCCCTG 

Retrieve as FASTA